Wall clock time and date at job start Sat Apr 11 2020 05:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99922 * 2 1 4 4 C 1.38751 * 120.05336 * 354.85596 * 3 2 1 5 5 C 1.38120 * 119.94263 * 180.02562 * 4 3 2 6 6 C 1.38293 * 120.05648 * 359.97438 * 5 4 3 7 7 C 1.38242 * 120.11070 * 0.02562 * 6 5 4 8 8 C 1.38171 * 120.05789 * 359.97438 * 7 6 5 9 9 C 1.50696 * 120.02987 * 179.97438 * 8 7 6 10 10 C 1.52995 * 115.55068 * 99.37845 * 9 8 7 11 11 N 1.46499 * 109.47093 * 294.33952 * 10 9 8 12 12 S 1.65601 * 119.99796 * 159.46781 * 11 10 9 13 13 O 1.42102 * 104.27732 * 177.88856 * 12 11 10 14 14 O 1.42098 * 104.27749 * 305.74166 * 12 11 10 15 15 C 1.81401 * 104.45127 * 61.81592 * 12 11 10 16 16 C 1.53004 * 109.47104 * 179.97438 * 15 12 11 17 17 C 1.50696 * 109.46905 * 180.02562 * 16 15 12 18 18 H 1.08004 * 120.00394 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99997 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99822 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99946 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46775 * 90.00504 * 21 19 17 23 23 H 1.48502 * 109.46938 * 209.99911 * 21 19 17 24 24 H 1.48493 * 109.47319 * 330.00145 * 21 19 17 25 25 C 1.53001 * 117.49921 * 313.67087 * 9 8 7 26 26 C 1.53000 * 60.00001 * 252.51301 * 25 9 8 27 27 H 1.09001 * 109.46955 * 304.80973 * 1 2 3 28 28 H 1.08997 * 109.47200 * 64.81275 * 1 2 3 29 29 H 1.09005 * 109.46730 * 184.81230 * 1 2 3 30 30 H 1.08001 * 120.02879 * 0.04287 * 4 3 2 31 31 H 1.07998 * 119.97402 * 179.72024 * 5 4 3 32 32 H 1.07999 * 119.94705 * 179.97438 * 6 5 4 33 33 H 1.08002 * 119.97315 * 180.02562 * 7 6 5 34 34 H 1.09007 * 109.47523 * 54.34000 * 10 9 8 35 35 H 1.09004 * 109.47269 * 174.33774 * 10 9 8 36 36 H 0.96990 * 120.00312 * 339.46716 * 11 10 9 37 37 H 1.08994 * 109.46688 * 299.99807 * 15 12 11 38 38 H 1.09003 * 109.46889 * 59.99950 * 15 12 11 39 39 H 1.09000 * 109.46789 * 300.00038 * 16 15 12 40 40 H 1.08992 * 109.47199 * 59.99747 * 16 15 12 41 41 H 0.97004 * 120.00087 * 179.97438 * 20 19 17 42 42 H 1.08996 * 117.49763 * 359.97438 * 25 9 8 43 43 H 1.08996 * 117.50194 * 145.02160 * 25 9 8 44 44 H 1.09005 * 117.49526 * 252.51308 * 26 25 9 45 45 H 1.09000 * 117.50552 * 107.49030 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2957 2.3731 -0.1077 5 6 1.9251 3.6025 -0.1080 6 6 3.3019 3.6758 -0.0005 7 6 4.0517 2.5194 0.1069 8 6 3.4268 1.2870 0.1077 9 6 4.2448 0.0268 0.2242 10 6 4.3072 -0.5926 1.6218 11 7 5.0176 0.3145 2.5266 12 16 4.8118 0.1793 4.1642 13 8 5.6764 1.1669 4.7087 14 8 3.4048 0.2558 4.3480 15 6 5.4162 -1.4844 4.5607 16 6 5.2777 -1.7326 6.0641 17 6 5.7803 -3.1145 6.3935 18 1 6.1602 -3.7523 5.6090 19 6 5.7543 -3.5652 7.6963 20 7 5.2913 -2.7888 8.6515 21 14 6.3768 -5.2785 8.1045 22 1 7.8273 -5.2167 8.4168 23 1 5.6393 -5.8058 9.2806 24 1 6.1586 -6.1747 6.9408 25 6 5.4895 -0.0917 -0.6577 26 6 4.2469 -0.9272 -0.9720 27 1 -0.3633 0.5867 0.8438 28 1 -0.3633 0.4373 -0.9299 29 1 -0.3633 -1.0241 0.0862 30 1 0.2204 2.3164 -0.1909 31 1 1.3420 4.5072 -0.1963 32 1 3.7923 4.6381 -0.0014 33 1 5.1268 2.5792 0.1911 34 1 3.2952 -0.7563 1.9922 35 1 4.8350 -1.5451 1.5739 36 1 5.6085 0.9941 2.1666 37 1 4.8301 -2.2235 4.0146 38 1 6.4645 -1.5680 4.2740 39 1 5.8640 -0.9933 6.6098 40 1 4.2296 -1.6487 6.3511 41 1 5.2727 -3.1060 9.5680 42 1 5.7165 0.7418 -1.3224 43 1 6.3532 -0.6108 -0.2422 44 1 4.2932 -1.9960 -0.7633 45 1 3.6566 -0.6433 -1.8433 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264719228.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:18 Heat of formation + Delta-G solvation = -93.098733 kcal Electronic energy + Delta-G solvation = -27607.210387 eV Core-core repulsion = 23716.723657 eV Total energy + Delta-G solvation = -3890.486730 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.36597 -39.13296 -38.14038 -37.85434 -36.99732 -35.88968 -35.07254 -33.12123 -31.71648 -30.96638 -28.09134 -27.58743 -27.41377 -24.07862 -23.71476 -23.50280 -22.48700 -20.75569 -20.24517 -19.09891 -18.87488 -18.24801 -17.62427 -17.05446 -16.89160 -16.71840 -16.60512 -16.51253 -15.99726 -15.46742 -15.36857 -15.22522 -14.89921 -14.56834 -14.47778 -14.10065 -13.71128 -13.59446 -13.45285 -13.19295 -13.09497 -13.01572 -12.92216 -12.77445 -12.66357 -12.42436 -12.27364 -12.23906 -12.12293 -11.94680 -11.74565 -11.71398 -11.31412 -11.12171 -10.90512 -10.64084 -10.31238 -9.76576 -9.04691 -8.25265 -6.39425 -0.66615 0.38886 0.52545 1.41599 1.43636 1.54760 1.85295 2.38809 2.44857 2.80319 2.81884 2.92169 3.08175 3.29863 3.63220 3.77647 3.92985 3.98206 4.06448 4.09120 4.15389 4.20300 4.30512 4.40326 4.44619 4.49997 4.56097 4.74323 4.75727 4.78406 4.80325 4.87540 4.94854 4.98644 5.11809 5.19028 5.27644 5.28474 5.35948 5.43765 5.52014 5.62806 5.69050 5.89936 6.06468 6.16560 6.51300 6.74357 7.30757 8.87156 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016383 B = 0.002871 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.634041 B = 9749.657880 C = 9934.214794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.323 6.323 3 C 0.117 3.883 4 C -0.221 4.221 5 C -0.091 4.091 6 C -0.167 4.167 7 C -0.085 4.085 8 C -0.094 4.094 9 C -0.100 4.100 10 C 0.152 3.848 11 N -1.102 6.102 12 S 2.617 3.383 13 O -1.000 7.000 14 O -1.001 7.001 15 C -0.585 4.585 16 C 0.019 3.981 17 C -0.538 4.538 18 H 0.078 0.922 19 C -0.005 4.005 20 N -0.935 5.935 21 Si 0.975 3.025 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.256 1.256 25 C -0.153 4.153 26 C -0.142 4.142 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.114 0.886 30 H 0.142 0.858 31 H 0.145 0.855 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.423 0.577 37 H 0.142 0.858 38 H 0.146 0.854 39 H 0.006 0.994 40 H 0.005 0.995 41 H 0.267 0.733 42 H 0.104 0.896 43 H 0.113 0.887 44 H 0.109 0.891 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.909 7.465 -25.779 27.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.236 6.236 3 C 0.072 3.928 4 C -0.240 4.240 5 C -0.109 4.109 6 C -0.185 4.185 7 C -0.103 4.103 8 C -0.094 4.094 9 C -0.102 4.102 10 C 0.026 3.974 11 N -0.863 5.863 12 S 2.714 3.286 13 O -0.990 6.990 14 O -0.991 6.991 15 C -0.718 4.718 16 C -0.019 4.019 17 C -0.577 4.577 18 H 0.096 0.904 19 C -0.203 4.203 20 N -0.575 5.575 21 Si 0.798 3.202 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.180 1.180 25 C -0.189 4.189 26 C -0.179 4.179 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.132 0.868 30 H 0.160 0.840 31 H 0.163 0.837 32 H 0.161 0.839 33 H 0.161 0.839 34 H 0.084 0.916 35 H 0.112 0.888 36 H 0.259 0.741 37 H 0.161 0.839 38 H 0.165 0.835 39 H 0.024 0.976 40 H 0.023 0.977 41 H 0.076 0.924 42 H 0.123 0.877 43 H 0.131 0.869 44 H 0.127 0.873 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.379 7.839 -24.978 26.726 hybrid contribution 0.125 -0.600 0.543 0.819 sum -5.255 7.239 -24.435 26.021 Atomic orbital electron populations 1.23280 0.77317 1.05179 1.01820 1.86085 1.22516 1.26573 1.88456 1.19139 0.92219 0.84986 0.96481 1.21511 1.01011 0.92488 1.08969 1.21276 0.95112 0.97555 0.96985 1.21377 0.94328 0.99163 1.03669 1.21141 1.00977 0.90869 0.97282 1.18563 0.90173 0.94557 1.06142 1.19892 1.02365 0.96305 0.91643 1.20928 0.96611 0.92014 0.87799 1.55165 1.60687 1.47136 1.23351 1.04501 0.73630 0.77373 0.73115 1.93494 1.68829 1.58412 1.78284 1.93496 1.33028 1.87263 1.85302 1.30316 1.13733 1.21233 1.06475 1.18827 0.96565 0.98550 0.87995 1.21526 1.42275 0.99835 0.94081 0.90413 1.26141 0.95286 1.02596 0.96314 1.70111 1.47036 1.38960 1.01368 0.85295 0.78349 0.78345 0.78162 1.19593 1.20926 1.18001 1.23218 0.91645 1.02972 1.01109 1.22988 1.00608 0.97591 0.96759 0.92954 0.91277 0.86766 0.84028 0.83733 0.83919 0.83918 0.91628 0.88792 0.74090 0.83948 0.83546 0.97594 0.97651 0.92416 0.87730 0.86873 0.87268 0.88848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.82 113.37 1.11 1.40 16 2 O -0.32 -7.33 9.68 -92.49 -0.90 -8.23 16 3 C 0.12 2.77 6.62 22.51 0.15 2.92 16 4 C -0.22 -4.54 9.03 22.36 0.20 -4.34 16 5 C -0.09 -1.69 10.04 22.25 0.22 -1.47 16 6 C -0.17 -3.12 10.04 22.28 0.22 -2.90 16 7 C -0.08 -1.71 9.33 22.25 0.21 -1.50 16 8 C -0.09 -2.12 4.94 -19.77 -0.10 -2.22 16 9 C -0.10 -1.98 1.25 -52.93 -0.07 -2.05 16 10 C 0.15 3.55 5.93 86.38 0.51 4.06 16 11 N -1.10 -28.87 5.77 -187.49 -1.08 -29.95 16 12 S 2.62 97.17 5.45 -56.49 -0.31 96.86 16 13 O -1.00 -43.12 18.08 -127.65 -2.31 -45.43 16 14 O -1.00 -44.39 17.56 -127.65 -2.24 -46.63 16 15 C -0.59 -22.28 5.93 71.98 0.43 -21.85 16 16 C 0.02 1.03 4.98 29.85 0.15 1.18 16 17 C -0.54 -29.94 9.11 25.60 0.23 -29.70 16 18 H 0.08 3.96 7.74 -2.91 -0.02 3.93 16 19 C -0.01 -0.29 5.46 84.66 0.46 0.17 16 20 N -0.94 -57.37 13.29 21.45 0.28 -57.08 16 21 Si 0.98 43.33 29.54 68.60 2.03 45.36 16 22 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 23 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 24 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 25 C -0.15 -2.17 9.58 30.59 0.29 -1.88 16 26 C -0.14 -2.25 9.62 30.59 0.29 -1.96 16 27 H 0.05 0.84 7.61 -2.39 -0.02 0.82 16 28 H 0.07 0.80 7.72 -2.39 -0.02 0.78 16 29 H 0.11 1.38 8.14 -2.38 -0.02 1.36 16 30 H 0.14 2.28 6.33 -2.91 -0.02 2.27 16 31 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 32 H 0.14 1.98 8.06 -2.91 -0.02 1.95 16 33 H 0.14 2.28 7.94 -2.91 -0.02 2.25 16 34 H 0.07 1.82 7.70 -2.38 -0.02 1.80 16 35 H 0.09 1.70 8.09 -2.39 -0.02 1.68 16 36 H 0.42 9.32 8.66 -96.76 -0.84 8.48 16 37 H 0.14 4.69 8.14 -2.39 -0.02 4.67 16 38 H 0.15 4.80 8.14 -2.39 -0.02 4.78 16 39 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 40 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 41 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 42 H 0.10 1.32 8.01 -2.39 -0.02 1.30 16 43 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 45 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -80.30 391.72 -0.05 -80.34 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: 0.15 Total: 24.90 kcal Atomic # 6 Polarization: -64.46 SS G_CDS: 4.33 Total: -60.13 kcal Atomic # 7 Polarization: -86.24 SS G_CDS: -0.80 Total: -87.04 kcal Atomic # 8 Polarization: -94.85 SS G_CDS: -5.44 Total: -100.29 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 16 Polarization: 97.17 SS G_CDS: -0.31 Total: 96.86 kcal Total: -80.30 -0.05 -80.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264719228.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.754 kcal (2) G-P(sol) polarization free energy of solvation -80.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds