Wall clock time and date at job start Sat Apr 11 2020 05:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46502 * 119.99808 * 2 1 4 4 C 1.52998 * 109.47571 * 274.66902 * 3 2 1 5 5 H 1.08997 * 109.20582 * 301.51942 * 4 3 2 6 6 O 1.42721 * 109.33741 * 61.11491 * 4 3 2 7 7 C 1.43210 * 113.13826 * 172.06210 * 6 4 3 8 8 C 1.52966 * 108.49270 * 289.37366 * 7 6 4 9 9 C 1.50740 * 109.77114 * 49.23095 * 8 7 6 10 10 C 1.38589 * 118.77887 * 163.05809 * 9 8 7 11 11 C 1.38069 * 120.27683 * 179.54802 * 10 9 8 12 12 C 1.38254 * 119.86475 * 359.97438 * 11 10 9 13 13 C 1.38049 * 119.89631 * 0.09123 * 12 11 10 14 14 C 1.37905 * 121.33791 * 342.77902 * 9 8 7 15 15 S 1.65600 * 120.00344 * 180.02562 * 2 1 3 16 16 O 1.42098 * 104.27771 * 30.77044 * 15 2 1 17 17 O 1.42104 * 104.27667 * 158.62729 * 15 2 1 18 18 C 1.81394 * 104.45030 * 274.69797 * 15 2 1 19 19 C 1.52998 * 109.47278 * 175.41195 * 18 15 2 20 20 C 1.50705 * 109.47296 * 179.97438 * 19 18 15 21 21 H 1.08002 * 119.99849 * 0.02562 * 20 19 18 22 22 C 1.37872 * 119.99924 * 179.97438 * 20 19 18 23 23 N 1.31512 * 120.00243 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99947 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47110 * 59.99856 * 24 22 20 26 26 H 1.48494 * 109.47060 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47135 * 300.00114 * 24 22 20 28 28 H 1.08995 * 109.47083 * 90.00049 * 1 2 3 29 29 H 1.08997 * 109.46513 * 209.99607 * 1 2 3 30 30 H 1.08995 * 109.47378 * 329.99400 * 1 2 3 31 31 H 1.09005 * 109.47250 * 154.66125 * 3 2 1 32 32 H 1.09002 * 109.47074 * 34.67332 * 3 2 1 33 33 H 1.09001 * 109.63737 * 49.07569 * 7 6 4 34 34 H 1.09001 * 109.62861 * 169.47207 * 7 6 4 35 35 H 1.08999 * 109.42393 * 289.13715 * 8 7 6 36 36 H 1.09000 * 109.42109 * 169.32201 * 8 7 6 37 37 H 1.08008 * 119.85856 * 359.53001 * 10 9 8 38 38 H 1.08009 * 120.06575 * 180.02562 * 11 10 9 39 39 H 1.08004 * 120.04932 * 180.11182 * 12 11 10 40 40 H 1.08000 * 119.84984 * 180.02562 * 13 12 11 41 41 H 1.09004 * 109.46911 * 295.41104 * 18 15 2 42 42 H 1.09000 * 109.47169 * 55.40918 * 18 15 2 43 43 H 1.08996 * 109.46830 * 299.99994 * 19 18 15 44 44 H 1.09003 * 109.46789 * 59.99975 * 19 18 15 45 45 H 0.97008 * 120.00236 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3508 1.7692 -1.4376 5 1 2.8779 1.0172 -2.0248 6 8 1.0585 1.9891 -2.0019 7 6 1.1049 2.6291 -3.2822 8 6 1.5432 4.0810 -3.0833 9 6 2.7735 4.1277 -2.2136 10 6 3.5355 5.2852 -2.1972 11 6 4.6633 5.3650 -1.4047 12 6 5.0339 4.2859 -0.6240 13 6 4.2762 3.1320 -0.6408 14 6 3.1451 3.0495 -1.4382 15 16 2.2931 -1.4341 -0.0006 16 8 1.4437 -2.3289 -0.7056 17 8 3.5789 -1.0960 -0.5024 18 6 2.3949 -1.8988 1.7498 19 6 3.0456 -3.2779 1.8744 20 6 3.1307 -3.6637 3.3287 21 1 2.7576 -2.9926 4.0882 22 6 3.6840 -4.8739 3.6896 23 7 4.1379 -5.6914 2.7648 24 14 3.7888 -5.3525 5.4923 25 1 2.4229 -5.3948 6.0734 26 1 4.4205 -6.6909 5.6131 27 1 4.6069 -4.3517 6.2233 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3632 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 3.1836 1.1191 0.4398 32 1 1.6472 2.0060 0.5846 33 1 1.8212 2.1148 -3.9230 34 1 0.1168 2.6013 -3.7415 35 1 0.7393 4.6399 -2.6042 36 1 1.7668 4.5281 -4.0519 37 1 3.2459 6.1283 -2.8070 38 1 5.2544 6.2689 -1.3942 39 1 5.9145 4.3457 -0.0016 40 1 4.5662 2.2896 -0.0303 41 1 2.9951 -1.1640 2.2865 42 1 1.3923 -1.9303 2.1763 43 1 2.4454 -4.0126 1.3377 44 1 4.0483 -3.2463 1.4479 45 1 4.5275 -6.5427 3.0188 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264729206.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:26 Heat of formation + Delta-G solvation = -95.836441 kcal Electronic energy + Delta-G solvation = -27768.684775 eV Core-core repulsion = 23878.079329 eV Total energy + Delta-G solvation = -3890.605446 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.60807 -37.82405 -36.64762 -36.19614 -35.37333 -33.88612 -33.22822 -32.17306 -31.15635 -29.78608 -28.09288 -25.72319 -25.37680 -24.10183 -23.57557 -21.82997 -21.44377 -20.25974 -18.48366 -17.71348 -17.17114 -16.52616 -16.41150 -16.30563 -15.74701 -15.51434 -15.39736 -14.74408 -14.60828 -14.55636 -13.95218 -13.86951 -13.71038 -13.36384 -13.12394 -12.87819 -12.79309 -12.50434 -12.40314 -12.29515 -11.96661 -11.75841 -11.64660 -11.56878 -11.33397 -11.31075 -11.06557 -11.04500 -10.96382 -10.79382 -10.42681 -10.37274 -9.78457 -9.76272 -9.35564 -9.01233 -8.89783 -8.63856 -8.50085 -6.12220 -4.18042 0.75275 1.10496 1.15873 3.02737 3.27267 3.32099 3.33924 3.47451 3.62683 4.28959 4.35681 4.40395 4.41785 4.57123 4.63946 4.69779 4.80657 4.88908 4.93621 5.03823 5.19510 5.20235 5.22747 5.30415 5.34739 5.41159 5.56402 5.58260 5.62369 5.68731 5.72985 5.77488 5.81165 5.85721 6.05336 6.10967 6.22670 6.30927 6.34725 6.49145 6.67939 6.77104 7.00072 7.29732 7.36327 7.80481 8.17592 8.85175 9.46706 10.98750 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018485 B = 0.002819 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.369525 B = 9931.259881 C =10846.292703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -1.004 6.004 3 C 0.139 3.861 4 C 0.110 3.890 5 H 0.082 0.918 6 O -0.361 6.361 7 C 0.056 3.944 8 C -0.114 4.114 9 C -0.074 4.074 10 C -0.121 4.121 11 C -0.119 4.119 12 C -0.120 4.120 13 C -0.108 4.108 14 C -0.109 4.109 15 S 2.587 3.413 16 O -0.960 6.960 17 O -0.966 6.966 18 C -0.590 4.590 19 C 0.028 3.972 20 C -0.521 4.521 21 H 0.061 0.939 22 C 0.058 3.942 23 N -0.891 5.891 24 Si 0.900 3.100 25 H -0.275 1.275 26 H -0.285 1.285 27 H -0.275 1.275 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.055 0.945 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.125 0.875 40 H 0.131 0.869 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.035 0.965 44 H 0.032 0.968 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.637 23.274 -9.632 25.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.840 5.840 3 C 0.013 3.987 4 C 0.051 3.949 5 H 0.099 0.901 6 O -0.279 6.279 7 C -0.021 4.021 8 C -0.151 4.151 9 C -0.074 4.074 10 C -0.139 4.139 11 C -0.137 4.137 12 C -0.138 4.138 13 C -0.126 4.126 14 C -0.110 4.110 15 S 2.685 3.315 16 O -0.950 6.950 17 O -0.957 6.957 18 C -0.724 4.724 19 C -0.011 4.011 20 C -0.561 4.561 21 H 0.079 0.921 22 C -0.145 4.145 23 N -0.529 5.529 24 Si 0.727 3.273 25 H -0.201 1.201 26 H -0.211 1.211 27 H -0.201 1.201 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.117 0.883 32 H 0.105 0.895 33 H 0.073 0.927 34 H 0.117 0.883 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.143 0.857 40 H 0.149 0.851 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.053 0.947 44 H 0.050 0.950 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.450 22.625 -10.372 25.284 hybrid contribution 0.280 0.081 1.442 1.471 sum -4.170 22.706 -8.930 24.753 Atomic orbital electron populations 1.21367 0.78274 1.02093 1.02396 1.57604 1.15404 1.20740 1.90208 1.21334 0.97698 0.85923 0.93792 1.21499 0.83866 0.92905 0.96646 0.90059 1.88104 1.26722 1.79599 1.33519 1.22614 1.02362 0.91191 0.85912 1.21123 0.95696 0.98898 0.99376 1.19485 0.96660 0.93560 0.97662 1.21031 0.95605 0.97258 1.00014 1.21120 0.96976 0.98714 0.96861 1.21138 0.99841 0.93382 0.99467 1.21225 0.94297 0.98540 0.98573 1.20150 0.96985 0.95869 0.97952 1.05884 0.73600 0.72691 0.79348 1.93545 1.67156 1.63473 1.70813 1.93525 1.40800 1.82471 1.78873 1.30497 1.10152 1.10856 1.20846 1.18959 0.95937 0.86175 0.99984 1.20973 1.40964 1.03086 0.91059 0.92078 1.25066 0.95100 0.96309 0.97980 1.69946 1.39820 1.10136 1.32954 0.86528 0.78430 0.77757 0.84551 1.20061 1.21063 1.20072 0.92141 0.91547 0.91459 0.88266 0.89549 0.92697 0.88253 0.89721 0.89909 0.86142 0.86055 0.85711 0.85077 0.86259 0.86226 0.94720 0.95004 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.27 9.51 59.85 0.57 1.84 16 2 N -1.00 -14.24 3.08 -121.76 -0.37 -14.61 16 3 C 0.14 1.73 4.64 -4.04 -0.02 1.71 16 4 C 0.11 1.42 2.98 -27.91 -0.08 1.34 16 5 H 0.08 1.20 8.05 -51.93 -0.42 0.78 16 6 O -0.36 -4.43 9.38 -35.23 -0.33 -4.76 16 7 C 0.06 0.53 6.85 37.14 0.25 0.78 16 8 C -0.11 -0.93 6.00 -27.88 -0.17 -1.10 16 9 C -0.07 -0.76 5.78 -104.60 -0.60 -1.36 16 10 C -0.12 -1.09 9.67 -39.51 -0.38 -1.47 16 11 C -0.12 -1.04 10.05 -39.64 -0.40 -1.44 16 12 C -0.12 -1.15 10.05 -39.64 -0.40 -1.55 16 13 C -0.11 -1.20 9.10 -39.50 -0.36 -1.56 16 14 C -0.11 -1.27 5.47 -104.62 -0.57 -1.84 16 15 S 2.59 47.45 5.32 -107.50 -0.57 46.88 16 16 O -0.96 -20.51 17.27 -57.54 -0.99 -21.50 16 17 O -0.97 -19.49 16.72 -57.54 -0.96 -20.45 16 18 C -0.59 -11.36 6.12 37.16 0.23 -11.13 16 19 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 20 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 16 21 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 22 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 23 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 24 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 H 0.06 0.76 7.90 -51.93 -0.41 0.35 16 29 H 0.07 0.78 7.91 -51.93 -0.41 0.37 16 30 H 0.07 0.66 7.94 -51.93 -0.41 0.25 16 31 H 0.10 1.17 5.80 -51.93 -0.30 0.87 16 32 H 0.09 0.91 7.96 -51.93 -0.41 0.49 16 33 H 0.05 0.52 8.07 -51.93 -0.42 0.11 16 34 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 38 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 39 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 40 H 0.13 1.38 6.49 -52.49 -0.34 1.04 16 41 H 0.12 2.05 8.14 -51.92 -0.42 1.62 16 42 H 0.12 2.07 8.14 -51.92 -0.42 1.64 16 43 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 379.01 15.07 5.71 5.71 Total: -1.00 -35.02 379.01 -11.18 -46.21 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -6.89 Total: 0.56 kcal Atomic # 6 Polarization: -25.91 SS G_CDS: -2.48 Total: -28.40 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: 0.36 Total: -40.40 kcal Atomic # 8 Polarization: -44.43 SS G_CDS: -2.29 Total: -46.72 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 47.45 SS G_CDS: -0.57 Total: 46.88 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.02 -11.18 -46.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264729206.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.630 kcal (2) G-P(sol) polarization free energy of solvation -35.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds