Wall clock time and date at job start Sat Apr 11 2020 05:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 S 1.81394 * 109.47460 * 2 1 4 4 O 1.42103 * 108.57671 * 294.49149 * 3 2 1 5 5 O 1.42097 * 108.57877 * 65.51602 * 3 2 1 6 6 C 1.81395 * 101.92325 * 180.02562 * 3 2 1 7 7 C 1.52998 * 109.47395 * 179.97438 * 6 3 2 8 8 H 1.08995 * 109.47490 * 305.00776 * 7 6 3 9 9 C 1.53005 * 109.47405 * 185.00066 * 7 6 3 10 10 N 1.46502 * 109.46914 * 65.00400 * 7 6 3 11 11 C 1.46504 * 120.00072 * 59.99798 * 10 7 6 12 12 C 1.34775 * 120.00017 * 240.00287 * 10 7 6 13 13 O 1.21583 * 120.00139 * 4.65013 * 12 10 7 14 14 C 1.47642 * 120.00152 * 184.65451 * 12 10 7 15 15 C 1.40012 * 119.89417 * 22.28349 * 14 12 10 16 16 C 1.36315 * 120.10758 * 179.72122 * 15 14 12 17 17 C 1.40894 * 119.89030 * 0.57033 * 16 15 14 18 18 C 1.41111 * 120.10490 * 179.67546 * 17 16 15 19 19 H 1.07992 * 120.00197 * 209.03283 * 18 17 16 20 20 C 1.40224 * 119.99757 * 29.03915 * 18 17 16 21 21 N 1.30650 * 120.00377 * 10.23383 * 20 18 17 22 22 Si 1.86803 * 119.99903 * 190.23683 * 20 18 17 23 23 H 1.48494 * 109.46927 * 89.99910 * 22 20 18 24 24 H 1.48505 * 109.46961 * 209.99870 * 22 20 18 25 25 H 1.48497 * 109.46891 * 329.99653 * 22 20 18 26 26 C 1.40885 * 119.79181 * 359.70055 * 17 16 15 27 27 C 1.36317 * 119.89137 * 0.02562 * 26 17 16 28 28 H 1.09006 * 109.46693 * 300.00147 * 1 2 3 29 29 H 1.08998 * 109.47161 * 59.99274 * 1 2 3 30 30 H 1.08997 * 109.47222 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46693 * 239.99853 * 2 1 3 32 32 H 1.08998 * 109.47161 * 120.00726 * 2 1 3 33 33 H 1.09002 * 109.47475 * 300.00318 * 6 3 2 34 34 H 1.09012 * 109.47180 * 60.00121 * 6 3 2 35 35 H 1.08993 * 109.47141 * 180.02562 * 9 7 6 36 36 H 1.09001 * 109.46777 * 300.00506 * 9 7 6 37 37 H 1.08995 * 109.47079 * 60.00155 * 9 7 6 38 38 H 1.08992 * 109.47462 * 84.48828 * 11 10 7 39 39 H 1.09000 * 109.46915 * 204.49051 * 11 10 7 40 40 H 1.09007 * 109.47102 * 324.48373 * 11 10 7 41 41 H 1.08003 * 119.94620 * 359.97438 * 15 14 12 42 42 H 1.08000 * 120.05858 * 180.25112 * 16 15 14 43 43 H 0.96996 * 120.00045 * 180.02562 * 21 20 18 44 44 H 1.07998 * 120.05497 * 179.97438 * 26 17 16 45 45 H 1.08002 * 119.94715 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 8 1.7593 2.3231 -1.2258 5 8 1.7594 2.3231 1.2258 6 6 3.9330 1.4718 -0.0008 7 6 4.6282 2.8347 -0.0015 8 1 4.2678 3.4260 -0.8432 9 6 6.1400 2.6361 -0.1279 10 7 4.3307 3.5352 1.2503 11 6 4.7181 2.9410 2.5322 12 6 3.7007 4.7263 1.2227 13 8 3.3039 5.1799 0.1667 14 6 3.4924 5.4805 2.4747 15 6 4.3127 5.2343 3.5824 16 6 4.1279 5.9321 4.7387 17 6 3.1017 6.8940 4.8220 18 6 2.9020 7.6141 6.0189 19 1 1.9163 7.9732 6.2750 20 6 3.9836 7.8634 6.8759 21 7 5.2026 7.6098 6.4801 22 14 3.6815 8.5583 8.5833 23 1 3.4967 7.4429 9.5460 24 1 4.8470 9.3807 8.9964 25 1 2.4608 9.4036 8.5648 26 6 2.2753 7.1342 3.7065 27 6 2.4714 6.4353 2.5527 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 4.2261 0.9145 0.8890 34 1 4.2253 0.9148 -0.8911 35 1 6.6353 3.6070 -0.1280 36 1 6.5004 2.0448 0.7139 37 1 6.3614 2.1149 -1.0592 38 1 5.7558 3.1926 2.7505 39 1 4.0758 3.3305 3.3220 40 1 4.6105 1.8576 2.4777 41 1 5.0957 4.4931 3.5192 42 1 4.7637 5.7444 5.5913 43 1 5.9507 7.7819 7.0731 44 1 1.4871 7.8702 3.7658 45 1 1.8381 6.6184 1.6972 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270411597.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:46 Heat of formation + Delta-G solvation = -65.070779 kcal Electronic energy + Delta-G solvation = -28190.539879 eV Core-core repulsion = 24301.268533 eV Total energy + Delta-G solvation = -3889.271346 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.73519 -37.29389 -36.86198 -36.04554 -35.84244 -33.89152 -33.36956 -32.54287 -29.76638 -29.42716 -28.07202 -26.72570 -25.86189 -24.28112 -22.52468 -20.94724 -20.59767 -18.94546 -18.76253 -17.42361 -17.09877 -16.69252 -16.27618 -16.00572 -15.71570 -15.32260 -14.94478 -14.48758 -14.20386 -13.82505 -13.62552 -13.45418 -13.04339 -13.00479 -12.88284 -12.73260 -12.68313 -12.43674 -12.15950 -12.13633 -11.90823 -11.86379 -11.80804 -11.78305 -11.35302 -11.33430 -11.16778 -11.15461 -10.79127 -10.71185 -10.47632 -10.33431 -9.91862 -9.39491 -9.31639 -8.88178 -8.37270 -7.56381 -7.39021 -6.88207 -4.52814 -0.08590 2.31176 2.73942 2.97878 3.00497 3.04129 3.10202 3.33959 3.60189 3.81608 3.87178 3.93455 4.34108 4.41862 4.44759 4.63052 4.80877 4.93565 4.98625 5.18982 5.25345 5.35798 5.37121 5.42268 5.57697 5.59933 5.66909 5.68746 5.78082 6.02531 6.05535 6.18828 6.22981 6.40758 6.83291 6.90045 6.93749 7.13246 7.22210 7.54406 7.64845 7.85536 7.95305 8.07487 8.18011 8.50320 8.73708 8.84601 8.99732 10.03523 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018547 B = 0.003038 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.281414 B = 9213.683975 C = 9685.816716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.625 4.625 3 S 2.413 3.587 4 O -0.930 6.930 5 O -0.909 6.909 6 C -0.630 4.630 7 C 0.151 3.849 8 H 0.114 0.886 9 C -0.151 4.151 10 N -0.625 5.625 11 C 0.070 3.930 12 C 0.579 3.421 13 O -0.565 6.565 14 C -0.266 4.266 15 C -0.089 4.089 16 C -0.173 4.173 17 C 0.129 3.871 18 C -0.448 4.448 19 H 0.082 0.918 20 C 0.073 3.927 21 N -0.785 5.785 22 Si 0.915 3.085 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.261 1.261 26 C -0.233 4.233 27 C -0.025 4.025 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.126 0.874 32 H 0.129 0.871 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.109 0.891 40 H 0.050 0.950 41 H 0.115 0.885 42 H 0.123 0.877 43 H 0.283 0.717 44 H 0.098 0.902 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.989 -17.063 -7.205 18.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.752 4.752 3 S 2.592 3.408 4 O -0.927 6.927 5 O -0.906 6.906 6 C -0.760 4.760 7 C 0.045 3.955 8 H 0.132 0.868 9 C -0.210 4.210 10 N -0.360 5.360 11 C -0.073 4.073 12 C 0.376 3.624 13 O -0.446 6.446 14 C -0.271 4.271 15 C -0.107 4.107 16 C -0.192 4.192 17 C 0.126 3.874 18 C -0.477 4.477 19 H 0.100 0.900 20 C -0.146 4.146 21 N -0.410 5.410 22 Si 0.739 3.261 23 H -0.191 1.191 24 H -0.201 1.201 25 H -0.184 1.184 26 C -0.252 4.252 27 C -0.044 4.044 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.145 0.855 32 H 0.147 0.853 33 H 0.153 0.847 34 H 0.156 0.844 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.127 0.873 40 H 0.069 0.931 41 H 0.133 0.867 42 H 0.141 0.859 43 H 0.095 0.905 44 H 0.116 0.884 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.535 -16.024 -7.672 17.774 hybrid contribution 0.656 -0.711 0.805 1.259 sum 1.191 -16.735 -6.867 18.129 Atomic orbital electron populations 1.21495 0.90402 1.04546 1.03986 1.30356 1.07727 1.26224 1.10911 1.08459 0.78282 0.77764 0.76250 1.93594 1.80821 1.72445 1.45839 1.93656 1.80378 1.71709 1.44832 1.30809 1.26190 1.07501 1.11470 1.20507 0.96057 0.88735 0.90167 0.86836 1.22064 0.93941 1.02886 1.02109 1.47833 1.61227 1.21304 1.05642 1.22462 1.00621 0.97316 0.86857 1.18772 0.74663 0.79117 0.89818 1.90670 1.51863 1.69212 1.32868 1.18803 1.06561 1.07689 0.94012 1.21342 0.97849 0.98365 0.93155 1.21069 1.02416 0.97972 0.97755 1.17819 0.89667 0.88498 0.91461 1.19796 0.95793 1.29427 1.02702 0.89979 1.26038 0.94502 0.93960 1.00147 1.69718 0.99537 1.35352 1.36351 0.86187 0.79239 0.79543 0.81088 1.19124 1.20143 1.18438 1.20757 1.05711 1.04979 0.93775 1.20350 0.94688 0.92797 0.96584 0.90595 0.90902 0.90327 0.85525 0.85278 0.84744 0.84446 0.91345 0.91974 0.91546 0.92614 0.87325 0.93114 0.86735 0.85947 0.90539 0.88399 0.88313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.92 37.16 0.37 -0.89 16 2 C -0.62 -4.88 6.52 37.16 0.24 -4.64 16 3 S 2.41 31.27 4.64 -107.50 -0.50 30.77 16 4 O -0.93 -15.66 18.10 -57.83 -1.05 -16.71 16 5 O -0.91 -15.77 16.74 -57.83 -0.97 -16.74 16 6 C -0.63 -6.09 5.21 37.16 0.19 -5.89 16 7 C 0.15 2.08 2.64 -67.93 -0.18 1.90 16 8 H 0.11 1.83 6.91 -51.93 -0.36 1.47 16 9 C -0.15 -1.60 9.19 37.16 0.34 -1.25 16 10 N -0.63 -10.76 1.80 -175.12 -0.32 -11.08 16 11 C 0.07 1.01 7.75 59.85 0.46 1.47 16 12 C 0.58 12.98 6.99 -12.42 -0.09 12.89 16 13 O -0.57 -14.12 15.88 5.29 0.08 -14.04 16 14 C -0.27 -6.38 5.58 -104.73 -0.58 -6.96 16 15 C -0.09 -2.00 7.47 -39.61 -0.30 -2.30 16 16 C -0.17 -4.29 8.60 -39.27 -0.34 -4.63 16 17 C 0.13 3.36 5.55 -106.80 -0.59 2.77 16 18 C -0.45 -11.46 9.05 -37.75 -0.34 -11.80 16 19 H 0.08 2.01 7.87 -52.49 -0.41 1.60 16 20 C 0.07 1.74 5.26 -17.31 -0.09 1.65 16 21 N -0.79 -19.25 10.82 55.56 0.60 -18.65 16 22 Si 0.92 17.81 29.57 -169.99 -5.03 12.78 16 23 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 24 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 25 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 26 C -0.23 -5.87 9.73 -39.27 -0.38 -6.25 16 27 C -0.02 -0.62 9.52 -39.61 -0.38 -1.00 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.13 0.65 8.14 -51.92 -0.42 0.23 16 32 H 0.13 0.71 8.14 -51.92 -0.42 0.28 16 33 H 0.13 0.93 6.49 -51.92 -0.34 0.60 16 34 H 0.14 0.79 8.14 -51.92 -0.42 0.37 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.56 7.67 -51.93 -0.40 0.17 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.72 7.18 -51.93 -0.37 0.35 16 39 H 0.11 1.83 4.95 -51.93 -0.26 1.58 16 40 H 0.05 0.54 6.36 -51.93 -0.33 0.21 16 41 H 0.12 2.18 4.14 -52.48 -0.22 1.96 16 42 H 0.12 3.06 6.20 -52.49 -0.33 2.74 16 43 H 0.28 6.28 8.29 -40.82 -0.34 5.94 16 44 H 0.10 2.31 8.06 -52.49 -0.42 1.88 16 45 H 0.10 2.40 7.80 -52.49 -0.41 1.99 16 LS Contribution 374.92 15.07 5.65 5.65 Total: -1.00 -35.18 374.92 -9.54 -44.72 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -6.36 Total: 8.23 kcal Atomic # 6 Polarization: -23.28 SS G_CDS: -1.66 Total: -24.94 kcal Atomic # 7 Polarization: -30.01 SS G_CDS: 0.29 Total: -29.73 kcal Atomic # 8 Polarization: -45.55 SS G_CDS: -1.93 Total: -47.49 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.03 Total: 12.78 kcal Atomic # 16 Polarization: 31.27 SS G_CDS: -0.50 Total: 30.77 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.18 -9.54 -44.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270411597.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.351 kcal (2) G-P(sol) polarization free energy of solvation -35.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds