Wall clock time and date at job start Sat Apr 11 2020 05:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 S 1.81394 * 109.47460 * 2 1 4 4 O 1.42103 * 108.57671 * 294.49149 * 3 2 1 5 5 O 1.42097 * 108.57877 * 65.51602 * 3 2 1 6 6 C 1.81395 * 101.92325 * 180.02562 * 3 2 1 7 7 C 1.52998 * 109.47395 * 179.97438 * 6 3 2 8 8 H 1.08995 * 109.47490 * 305.00776 * 7 6 3 9 9 C 1.53005 * 109.47405 * 185.00066 * 7 6 3 10 10 N 1.46502 * 109.46914 * 65.00400 * 7 6 3 11 11 C 1.46504 * 120.00072 * 59.99798 * 10 7 6 12 12 C 1.34775 * 120.00017 * 240.00287 * 10 7 6 13 13 O 1.21583 * 120.00139 * 4.65013 * 12 10 7 14 14 C 1.47642 * 120.00152 * 184.65451 * 12 10 7 15 15 C 1.40012 * 119.89417 * 22.28349 * 14 12 10 16 16 C 1.36315 * 120.10758 * 179.72122 * 15 14 12 17 17 C 1.40894 * 119.89030 * 0.57033 * 16 15 14 18 18 C 1.41111 * 120.10490 * 179.67546 * 17 16 15 19 19 H 1.07992 * 120.00197 * 209.03283 * 18 17 16 20 20 C 1.40224 * 119.99757 * 29.03915 * 18 17 16 21 21 N 1.30650 * 120.00377 * 10.23383 * 20 18 17 22 22 Si 1.86803 * 119.99903 * 190.23683 * 20 18 17 23 23 H 1.48494 * 109.46927 * 89.99910 * 22 20 18 24 24 H 1.48505 * 109.46961 * 209.99870 * 22 20 18 25 25 H 1.48497 * 109.46891 * 329.99653 * 22 20 18 26 26 C 1.40885 * 119.79181 * 359.70055 * 17 16 15 27 27 C 1.36317 * 119.89137 * 0.02562 * 26 17 16 28 28 H 1.09006 * 109.46693 * 300.00147 * 1 2 3 29 29 H 1.08998 * 109.47161 * 59.99274 * 1 2 3 30 30 H 1.08997 * 109.47222 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46693 * 239.99853 * 2 1 3 32 32 H 1.08998 * 109.47161 * 120.00726 * 2 1 3 33 33 H 1.09002 * 109.47475 * 300.00318 * 6 3 2 34 34 H 1.09012 * 109.47180 * 60.00121 * 6 3 2 35 35 H 1.08993 * 109.47141 * 180.02562 * 9 7 6 36 36 H 1.09001 * 109.46777 * 300.00506 * 9 7 6 37 37 H 1.08995 * 109.47079 * 60.00155 * 9 7 6 38 38 H 1.08992 * 109.47462 * 84.48828 * 11 10 7 39 39 H 1.09000 * 109.46915 * 204.49051 * 11 10 7 40 40 H 1.09007 * 109.47102 * 324.48373 * 11 10 7 41 41 H 1.08003 * 119.94620 * 359.97438 * 15 14 12 42 42 H 1.08000 * 120.05858 * 180.25112 * 16 15 14 43 43 H 0.96996 * 120.00045 * 180.02562 * 21 20 18 44 44 H 1.07998 * 120.05497 * 179.97438 * 26 17 16 45 45 H 1.08002 * 119.94715 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 8 1.7593 2.3231 -1.2258 5 8 1.7594 2.3231 1.2258 6 6 3.9330 1.4718 -0.0008 7 6 4.6282 2.8347 -0.0015 8 1 4.2678 3.4260 -0.8432 9 6 6.1400 2.6361 -0.1279 10 7 4.3307 3.5352 1.2503 11 6 4.7181 2.9410 2.5322 12 6 3.7007 4.7263 1.2227 13 8 3.3039 5.1799 0.1667 14 6 3.4924 5.4805 2.4747 15 6 4.3127 5.2343 3.5824 16 6 4.1279 5.9321 4.7387 17 6 3.1017 6.8940 4.8220 18 6 2.9020 7.6141 6.0189 19 1 1.9163 7.9732 6.2750 20 6 3.9836 7.8634 6.8759 21 7 5.2026 7.6098 6.4801 22 14 3.6815 8.5583 8.5833 23 1 3.4967 7.4429 9.5460 24 1 4.8470 9.3807 8.9964 25 1 2.4608 9.4036 8.5648 26 6 2.2753 7.1342 3.7065 27 6 2.4714 6.4353 2.5527 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 4.2261 0.9145 0.8890 34 1 4.2253 0.9148 -0.8911 35 1 6.6353 3.6070 -0.1280 36 1 6.5004 2.0448 0.7139 37 1 6.3614 2.1149 -1.0592 38 1 5.7558 3.1926 2.7505 39 1 4.0758 3.3305 3.3220 40 1 4.6105 1.8576 2.4777 41 1 5.0957 4.4931 3.5192 42 1 4.7637 5.7444 5.5913 43 1 5.9507 7.7819 7.0731 44 1 1.4871 7.8702 3.7658 45 1 1.8381 6.6184 1.6972 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270411597.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:45 Heat of formation + Delta-G solvation = -89.772646 kcal Electronic energy + Delta-G solvation = -28191.611033 eV Core-core repulsion = 24301.268533 eV Total energy + Delta-G solvation = -3890.342500 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.29813 -39.07324 -37.94215 -37.51886 -36.91706 -35.70943 -34.03063 -33.90360 -31.51323 -31.32501 -28.88734 -28.07347 -27.63644 -25.05508 -24.06618 -22.80785 -22.08221 -20.38086 -19.76390 -19.30443 -18.30648 -17.87317 -17.60575 -17.22167 -17.04653 -16.70111 -16.22603 -15.90268 -15.44533 -15.17099 -15.04302 -14.59040 -14.40104 -14.32073 -14.17233 -13.91346 -13.83309 -13.65409 -13.42640 -13.27436 -13.23515 -13.02842 -12.99350 -12.94412 -12.86412 -12.80600 -12.41451 -12.36630 -12.28083 -12.09614 -11.73233 -11.68093 -11.21114 -11.16716 -11.08974 -10.61832 -9.75843 -9.47438 -9.30642 -8.70016 -6.47453 -0.96986 0.47100 1.14029 1.40619 1.44348 1.54295 1.88938 2.01766 2.13191 2.20086 2.73558 2.80199 3.10280 3.47794 3.67482 3.74268 3.81553 3.91021 4.07860 4.11398 4.21061 4.37651 4.39957 4.41654 4.44441 4.60133 4.69077 4.69548 4.78544 4.79746 4.92665 4.95409 5.05189 5.06596 5.07187 5.17786 5.26344 5.32326 5.59414 5.65569 5.81079 5.96486 6.01705 6.25515 6.43692 6.57606 6.81248 6.91489 7.32364 8.24850 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018547 B = 0.003038 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.281414 B = 9213.683975 C = 9685.816716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.587 4.587 3 S 2.371 3.629 4 O -0.993 6.993 5 O -0.974 6.974 6 C -0.608 4.608 7 C 0.134 3.866 8 H 0.078 0.922 9 C -0.145 4.145 10 N -0.615 5.615 11 C 0.056 3.944 12 C 0.573 3.427 13 O -0.607 6.607 14 C -0.281 4.281 15 C -0.074 4.074 16 C -0.190 4.190 17 C 0.102 3.898 18 C -0.481 4.481 19 H 0.080 0.920 20 C 0.036 3.964 21 N -0.809 5.809 22 Si 0.991 3.009 23 H -0.256 1.256 24 H -0.265 1.265 25 H -0.262 1.262 26 C -0.249 4.249 27 C -0.044 4.044 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.111 0.889 31 H 0.167 0.833 32 H 0.166 0.834 33 H 0.176 0.824 34 H 0.189 0.811 35 H 0.047 0.953 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.100 0.900 41 H 0.155 0.845 42 H 0.121 0.879 43 H 0.295 0.705 44 H 0.101 0.899 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.421 -21.164 -6.370 22.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.720 4.720 3 S 2.560 3.440 4 O -0.990 6.990 5 O -0.971 6.971 6 C -0.739 4.739 7 C 0.030 3.970 8 H 0.096 0.904 9 C -0.203 4.203 10 N -0.348 5.348 11 C -0.085 4.085 12 C 0.368 3.632 13 O -0.491 6.491 14 C -0.285 4.285 15 C -0.092 4.092 16 C -0.209 4.209 17 C 0.099 3.901 18 C -0.509 4.509 19 H 0.099 0.901 20 C -0.181 4.181 21 N -0.434 5.434 22 Si 0.811 3.189 23 H -0.181 1.181 24 H -0.190 1.190 25 H -0.185 1.185 26 C -0.269 4.269 27 C -0.063 4.063 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.129 0.871 31 H 0.185 0.815 32 H 0.184 0.816 33 H 0.194 0.806 34 H 0.206 0.794 35 H 0.066 0.934 36 H 0.107 0.893 37 H 0.117 0.883 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.119 0.881 41 H 0.172 0.828 42 H 0.138 0.862 43 H 0.106 0.894 44 H 0.119 0.881 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.977 -20.120 -6.847 21.461 hybrid contribution -0.076 0.387 0.431 0.584 sum 2.901 -19.733 -6.416 20.952 Atomic orbital electron populations 1.21689 0.91404 1.06185 1.02911 1.30039 1.06718 1.20435 1.14769 1.09053 0.80354 0.80426 0.74179 1.93521 1.82506 1.75777 1.47177 1.93589 1.82147 1.75149 1.46237 1.30616 1.21526 1.05721 1.16064 1.20857 0.98980 0.90030 0.87183 0.90382 1.22067 0.90520 1.02749 1.04996 1.47795 1.59198 1.19608 1.08174 1.22653 1.01051 1.00161 0.84675 1.18601 0.75336 0.80838 0.88440 1.90637 1.53831 1.70802 1.33839 1.19179 1.06192 1.07588 0.95548 1.21695 0.97869 0.97971 0.91640 1.21126 1.02670 0.98549 0.98596 1.18168 0.90511 0.89442 0.92008 1.20039 0.96592 1.30657 1.03602 0.90149 1.26884 0.93732 0.93762 1.03743 1.69742 1.00403 1.35308 1.37942 0.85062 0.79199 0.78964 0.75661 1.18064 1.18970 1.18545 1.20865 1.06337 1.05628 0.94052 1.20479 0.95612 0.93897 0.96351 0.92100 0.92015 0.87050 0.81492 0.81560 0.80628 0.79357 0.93392 0.89297 0.88338 0.90195 0.90144 0.88123 0.82836 0.86165 0.89419 0.88132 0.89171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 9.92 71.98 0.71 -1.79 16 2 C -0.59 -6.71 6.52 71.98 0.47 -6.24 16 3 S 2.37 59.45 4.64 -56.49 -0.26 59.19 16 4 O -0.99 -35.07 18.10 -127.37 -2.30 -37.38 16 5 O -0.97 -35.00 16.74 -127.37 -2.13 -37.14 16 6 C -0.61 -9.04 5.21 71.98 0.37 -8.67 16 7 C 0.13 3.41 2.64 44.99 0.12 3.53 16 8 H 0.08 2.58 6.91 -2.39 -0.02 2.56 16 9 C -0.14 -2.47 9.19 71.98 0.66 -1.80 16 10 N -0.62 -20.61 1.80 -826.22 -1.49 -22.10 16 11 C 0.06 1.44 7.75 127.77 0.99 2.43 16 12 C 0.57 26.72 6.99 86.73 0.61 27.33 16 13 O -0.61 -32.46 15.88 -3.98 -0.06 -32.52 16 14 C -0.28 -14.11 5.58 -19.93 -0.11 -14.22 16 15 C -0.07 -3.39 7.47 22.25 0.17 -3.22 16 16 C -0.19 -9.74 8.60 22.47 0.19 -9.54 16 17 C 0.10 5.58 5.55 -21.28 -0.12 5.46 16 18 C -0.48 -25.47 9.05 23.46 0.21 -25.25 16 19 H 0.08 4.12 7.87 -2.91 -0.02 4.10 16 20 C 0.04 1.73 5.26 85.35 0.45 2.18 16 21 N -0.81 -39.86 10.82 21.87 0.24 -39.62 16 22 Si 0.99 36.21 29.57 68.60 2.03 38.24 16 23 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 24 H -0.27 -9.16 7.11 99.48 0.71 -8.46 16 25 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 26 C -0.25 -13.48 9.73 22.47 0.22 -13.26 16 27 C -0.04 -2.37 9.52 22.25 0.21 -2.16 16 28 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 29 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.17 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.17 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.18 1.19 6.49 -2.39 -0.02 1.17 16 34 H 0.19 0.93 8.14 -2.38 -0.02 0.91 16 35 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.09 1.07 7.67 -2.39 -0.02 1.05 16 37 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.08 1.73 7.18 -2.39 -0.02 1.71 16 39 H 0.08 2.62 4.95 -2.39 -0.01 2.60 16 40 H 0.10 1.62 6.36 -2.38 -0.02 1.60 16 41 H 0.15 5.67 4.14 -2.91 -0.01 5.66 16 42 H 0.12 6.13 6.20 -2.91 -0.02 6.12 16 43 H 0.29 12.89 8.29 -92.71 -0.77 12.12 16 44 H 0.10 5.15 8.06 -2.91 -0.02 5.13 16 45 H 0.09 4.85 7.80 -2.91 -0.02 4.83 16 Total: -1.00 -88.07 374.92 2.18 -85.89 By element: Atomic # 1 Polarization: 29.67 SS G_CDS: 1.00 Total: 30.67 kcal Atomic # 6 Polarization: -50.40 SS G_CDS: 5.16 Total: -45.24 kcal Atomic # 7 Polarization: -60.47 SS G_CDS: -1.25 Total: -61.72 kcal Atomic # 8 Polarization: -102.53 SS G_CDS: -4.50 Total: -107.03 kcal Atomic # 14 Polarization: 36.21 SS G_CDS: 2.03 Total: 38.24 kcal Atomic # 16 Polarization: 59.45 SS G_CDS: -0.26 Total: 59.19 kcal Total: -88.07 2.18 -85.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270411597.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.878 kcal (2) G-P(sol) polarization free energy of solvation -88.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds