Wall clock time and date at job start Sat Apr 11 2020 05:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47112 * 2 1 4 4 C 1.52999 * 109.47185 * 239.99901 * 2 1 3 5 5 H 1.09005 * 109.47424 * 305.00124 * 4 2 1 6 6 C 1.52994 * 109.47092 * 184.99864 * 4 2 1 7 7 S 1.81401 * 109.47227 * 64.99855 * 4 2 1 8 8 C 1.81396 * 101.92059 * 179.97438 * 7 4 2 9 9 O 1.42100 * 108.58048 * 294.49084 * 7 4 2 10 10 O 1.42099 * 108.57443 * 65.51287 * 7 4 2 11 11 N 1.46496 * 109.47028 * 119.99985 * 2 1 3 12 12 C 1.46504 * 120.00137 * 59.99730 * 11 2 1 13 13 C 1.34775 * 119.99999 * 240.00134 * 11 2 1 14 14 O 1.21593 * 119.99929 * 355.49493 * 13 11 2 15 15 C 1.47643 * 120.00173 * 175.49447 * 13 11 2 16 16 C 1.40017 * 119.89352 * 221.64978 * 15 13 11 17 17 C 1.36314 * 120.10388 * 179.75797 * 16 15 13 18 18 C 1.40892 * 119.89084 * 0.52067 * 17 16 15 19 19 C 1.41116 * 120.10212 * 179.71718 * 18 17 16 20 20 H 1.08003 * 119.99423 * 209.07455 * 19 18 17 21 21 C 1.40225 * 120.00239 * 29.07246 * 19 18 17 22 22 N 1.30655 * 119.99749 * 10.59723 * 21 19 18 23 23 Si 1.86794 * 120.00061 * 190.59669 * 21 19 18 24 24 H 1.48495 * 109.47176 * 90.00047 * 23 21 19 25 25 H 1.48500 * 109.47085 * 210.00064 * 23 21 19 26 26 H 1.48496 * 109.47124 * 330.00023 * 23 21 19 27 27 C 1.40881 * 119.79393 * 359.73365 * 18 17 16 28 28 C 1.36323 * 119.89390 * 0.02562 * 27 18 17 29 29 H 1.08996 * 109.47437 * 300.00528 * 1 2 3 30 30 H 1.09005 * 109.46794 * 60.00275 * 1 2 3 31 31 H 1.08996 * 109.47112 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47199 * 60.00150 * 6 4 2 33 33 H 1.09004 * 109.47489 * 179.97438 * 6 4 2 34 34 H 1.08996 * 109.47411 * 300.00338 * 6 4 2 35 35 H 1.09001 * 109.47570 * 60.00445 * 8 7 4 36 36 H 1.09007 * 109.47081 * 180.02562 * 8 7 4 37 37 H 1.08998 * 109.47539 * 299.99878 * 8 7 4 38 38 H 1.08999 * 109.46386 * 95.24949 * 12 11 2 39 39 H 1.08997 * 109.47174 * 215.24407 * 12 11 2 40 40 H 1.08996 * 109.47216 * 335.25161 * 12 11 2 41 41 H 1.07993 * 119.94766 * 0.02562 * 16 15 13 42 42 H 1.08003 * 120.05699 * 180.23522 * 17 16 15 43 43 H 0.96998 * 119.99561 * 180.02562 * 22 21 19 44 44 H 1.08005 * 120.05795 * 179.97438 * 27 18 17 45 45 H 1.07992 * 119.94667 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 1.6054 -1.7199 -1.2952 6 6 3.5648 -0.8310 -1.1879 7 16 1.5601 0.2155 -2.7266 8 6 2.2552 -0.8021 -4.0577 9 8 0.1433 0.1967 -2.8343 10 8 2.2382 1.4642 -2.7109 11 7 2.0183 -0.6906 1.1961 12 6 1.6643 -2.0932 1.4280 13 6 2.7931 -0.0356 2.0833 14 8 3.1546 1.1020 1.8514 15 6 3.2030 -0.6993 3.3368 16 6 3.1935 0.0159 4.5405 17 6 3.5664 -0.5941 5.7012 18 6 3.9724 -1.9432 5.6864 19 6 4.3650 -2.5773 6.8844 20 1 5.0852 -3.3817 6.8585 21 6 3.8202 -2.1629 8.1082 22 7 2.8050 -1.3406 8.1264 23 14 4.5458 -2.7865 9.7125 24 1 5.6194 -1.8643 10.1618 25 1 3.4815 -2.8482 10.7463 26 1 5.1133 -4.1430 9.5049 27 6 3.9854 -2.6570 4.4719 28 6 3.6060 -2.0400 3.3170 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 3.8532 -1.3940 -0.3002 33 1 3.9282 -1.3453 -2.0777 34 1 3.9994 0.1675 -1.1420 35 1 1.8146 -1.7984 -4.0213 36 1 2.0338 -0.3415 -5.0206 37 1 3.3352 -0.8775 -3.9313 38 1 2.4615 -2.7356 1.0539 39 1 1.5325 -2.2627 2.4966 40 1 0.7359 -2.3247 0.9061 41 1 2.8861 1.0511 4.5502 42 1 3.5551 -0.0428 6.6298 43 1 2.4284 -1.0537 8.9730 44 1 4.2962 -3.6912 4.4556 45 1 3.6161 -2.5863 2.3855 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270430194.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:49 Heat of formation + Delta-G solvation = -78.689201 kcal Electronic energy + Delta-G solvation = -27836.074566 eV Core-core repulsion = 23946.212681 eV Total energy + Delta-G solvation = -3889.861886 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.86157 -37.51902 -37.24325 -36.44151 -36.16082 -34.02066 -33.16424 -31.03939 -30.01339 -29.55273 -29.15419 -26.71818 -25.94794 -24.26769 -22.62946 -21.18066 -20.66833 -18.98867 -18.97872 -17.58284 -17.45131 -16.64783 -16.25779 -16.03820 -15.75606 -15.38696 -15.03091 -14.39460 -14.22671 -13.91061 -13.69725 -13.56603 -13.43274 -13.38188 -12.96263 -12.80996 -12.63152 -12.45986 -12.23163 -12.21071 -12.04857 -12.00461 -11.78644 -11.68998 -11.51069 -11.42738 -11.24933 -11.21420 -11.01864 -10.94005 -10.62233 -10.56237 -10.02368 -9.54640 -9.41042 -9.02806 -8.39858 -7.71971 -7.50494 -6.94741 -4.61197 -0.29826 2.27650 2.45031 2.92086 2.95944 2.98587 2.99955 3.25599 3.41666 3.67351 3.71826 3.77744 4.15601 4.33572 4.43672 4.50158 4.67498 4.86514 5.12609 5.17173 5.21506 5.31633 5.39173 5.49558 5.53434 5.58016 5.64056 5.75214 5.97253 5.99187 6.06302 6.10636 6.21403 6.22154 6.74925 6.83130 6.86171 7.01164 7.09992 7.43128 7.55568 7.71167 7.85431 7.96631 8.08273 8.43095 8.64955 8.74035 8.85216 9.97141 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.032708 B = 0.002421 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.843073 B =11564.564051 C =11706.695520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.158 3.842 3 H 0.113 0.887 4 C -0.583 4.583 5 H 0.138 0.862 6 C -0.140 4.140 7 S 2.418 3.582 8 C -0.657 4.657 9 O -0.937 6.937 10 O -0.931 6.931 11 N -0.608 5.608 12 C 0.078 3.922 13 C 0.577 3.423 14 O -0.558 6.558 15 C -0.271 4.271 16 C -0.045 4.045 17 C -0.170 4.170 18 C 0.127 3.873 19 C -0.449 4.449 20 H 0.082 0.918 21 C 0.072 3.928 22 N -0.783 5.783 23 Si 0.915 3.085 24 H -0.266 1.266 25 H -0.276 1.276 26 H -0.261 1.261 27 C -0.231 4.231 28 C -0.059 4.059 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.052 0.948 39 H 0.088 0.912 40 H 0.062 0.938 41 H 0.094 0.906 42 H 0.123 0.877 43 H 0.285 0.715 44 H 0.097 0.903 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.895 -3.990 -16.745 17.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.053 3.947 3 H 0.131 0.869 4 C -0.693 4.693 5 H 0.156 0.844 6 C -0.198 4.198 7 S 2.600 3.400 8 C -0.806 4.806 9 O -0.934 6.934 10 O -0.928 6.928 11 N -0.342 5.342 12 C -0.065 4.065 13 C 0.371 3.629 14 O -0.437 6.437 15 C -0.275 4.275 16 C -0.065 4.065 17 C -0.190 4.190 18 C 0.124 3.876 19 C -0.478 4.478 20 H 0.100 0.900 21 C -0.148 4.148 22 N -0.407 5.407 23 Si 0.739 3.261 24 H -0.191 1.191 25 H -0.201 1.201 26 H -0.184 1.184 27 C -0.250 4.250 28 C -0.078 4.078 29 H 0.092 0.908 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.149 0.851 38 H 0.070 0.930 39 H 0.106 0.894 40 H 0.081 0.919 41 H 0.112 0.888 42 H 0.141 0.859 43 H 0.096 0.904 44 H 0.115 0.885 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.353 -2.488 -16.754 17.266 hybrid contribution 0.584 -1.330 0.776 1.647 sum -2.769 -3.818 -15.978 16.659 Atomic orbital electron populations 1.22641 0.93957 1.03831 1.04664 1.20602 0.94135 0.97696 0.82312 0.86934 1.30588 1.07143 1.14546 1.17009 0.84437 1.21652 0.89458 1.04703 1.03983 1.08054 0.76032 0.77439 0.78509 1.30283 1.14228 1.16653 1.19444 1.93576 1.27377 1.86974 1.85442 1.93615 1.76086 1.37472 1.85660 1.47732 1.52150 1.12617 1.21695 1.22000 0.99456 0.81340 1.03714 1.18865 0.75971 0.85056 0.83005 1.90675 1.56217 1.19415 1.77431 1.18820 1.20762 0.95904 0.92040 1.20401 0.96967 0.97339 0.91771 1.21055 1.06033 0.95049 0.96841 1.17781 0.86693 0.91059 0.92092 1.19779 1.21429 1.15928 0.90637 0.89976 1.26052 0.93498 0.93601 1.01610 1.69713 1.16774 1.24906 1.29301 0.86183 0.79570 0.80334 0.79969 1.19065 1.20070 1.18448 1.20728 1.12198 0.98742 0.93360 1.20561 0.97549 0.92747 0.96953 0.90838 0.89376 0.91360 0.89804 0.91675 0.90177 0.85275 0.85268 0.85063 0.93005 0.89360 0.91947 0.88761 0.85930 0.90383 0.88528 0.88485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.36 8.82 37.16 0.33 -2.03 16 2 C 0.16 2.16 2.21 -67.93 -0.15 2.01 16 3 H 0.11 1.81 6.91 -51.93 -0.36 1.45 16 4 C -0.58 -5.64 2.12 -26.73 -0.06 -5.69 16 5 H 0.14 0.89 7.84 -51.92 -0.41 0.49 16 6 C -0.14 -1.39 8.73 37.15 0.32 -1.06 16 7 S 2.42 22.85 4.68 -107.50 -0.50 22.34 16 8 C -0.66 -3.33 10.17 101.05 1.03 -2.30 16 9 O -0.94 -11.03 15.46 -57.83 -0.89 -11.93 16 10 O -0.93 -12.63 17.91 -57.83 -1.04 -13.67 16 11 N -0.61 -9.50 1.79 -175.12 -0.31 -9.81 16 12 C 0.08 1.00 7.99 59.85 0.48 1.48 16 13 C 0.58 11.71 7.31 -12.42 -0.09 11.61 16 14 O -0.56 -12.97 16.28 5.28 0.09 -12.89 16 15 C -0.27 -5.91 5.16 -104.73 -0.54 -6.45 16 16 C -0.05 -1.08 9.58 -39.61 -0.38 -1.46 16 17 C -0.17 -4.27 8.60 -39.27 -0.34 -4.61 16 18 C 0.13 3.16 5.55 -106.80 -0.59 2.56 16 19 C -0.45 -11.05 9.05 -37.74 -0.34 -11.39 16 20 H 0.08 1.92 7.87 -52.48 -0.41 1.51 16 21 C 0.07 1.69 5.25 -17.31 -0.09 1.60 16 22 N -0.78 -19.03 10.84 55.56 0.60 -18.43 16 23 Si 0.92 17.47 29.57 -169.99 -5.03 12.44 16 24 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 25 H -0.28 -5.17 7.11 56.52 0.40 -4.76 16 26 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 27 C -0.23 -5.14 9.73 -39.27 -0.38 -5.52 16 28 C -0.06 -1.20 7.55 -39.61 -0.30 -1.50 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.09 1.06 5.40 -51.93 -0.28 0.78 16 31 H 0.07 0.70 6.67 -51.93 -0.35 0.36 16 32 H 0.08 0.96 7.26 -51.93 -0.38 0.59 16 33 H 0.06 0.39 6.56 -51.93 -0.34 0.05 16 34 H 0.08 0.94 8.06 -51.93 -0.42 0.52 16 35 H 0.13 0.38 8.14 -51.92 -0.42 -0.04 16 36 H 0.13 0.55 8.14 -51.92 -0.42 0.12 16 37 H 0.13 0.49 6.87 -51.92 -0.36 0.13 16 38 H 0.05 0.58 6.69 -51.93 -0.35 0.24 16 39 H 0.09 1.33 6.02 -51.93 -0.31 1.02 16 40 H 0.06 0.63 6.44 -51.93 -0.33 0.30 16 41 H 0.09 2.19 8.06 -52.49 -0.42 1.77 16 42 H 0.12 3.17 6.22 -52.48 -0.33 2.85 16 43 H 0.28 6.29 8.29 -40.82 -0.34 5.95 16 44 H 0.10 1.98 8.06 -52.48 -0.42 1.56 16 45 H 0.10 1.63 5.54 -52.49 -0.29 1.34 16 LS Contribution 368.82 15.07 5.56 5.56 Total: -1.00 -32.75 368.82 -8.79 -41.54 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -6.16 Total: 7.60 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: -1.10 Total: -22.75 kcal Atomic # 7 Polarization: -28.53 SS G_CDS: 0.29 Total: -28.24 kcal Atomic # 8 Polarization: -36.64 SS G_CDS: -1.84 Total: -38.48 kcal Atomic # 14 Polarization: 17.47 SS G_CDS: -5.03 Total: 12.44 kcal Atomic # 16 Polarization: 22.85 SS G_CDS: -0.50 Total: 22.34 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.75 -8.79 -41.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270430194.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.154 kcal (2) G-P(sol) polarization free energy of solvation -32.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds