Wall clock time and date at job start Sat Apr 11 2020 05:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47112 * 2 1 4 4 C 1.52999 * 109.47185 * 239.99901 * 2 1 3 5 5 H 1.09005 * 109.47424 * 305.00124 * 4 2 1 6 6 C 1.52994 * 109.47092 * 184.99864 * 4 2 1 7 7 S 1.81401 * 109.47227 * 64.99855 * 4 2 1 8 8 C 1.81396 * 101.92059 * 179.97438 * 7 4 2 9 9 O 1.42100 * 108.58048 * 294.49084 * 7 4 2 10 10 O 1.42099 * 108.57443 * 65.51287 * 7 4 2 11 11 N 1.46496 * 109.47028 * 119.99985 * 2 1 3 12 12 C 1.46504 * 120.00137 * 59.99730 * 11 2 1 13 13 C 1.34775 * 119.99999 * 240.00134 * 11 2 1 14 14 O 1.21593 * 119.99929 * 355.49493 * 13 11 2 15 15 C 1.47643 * 120.00173 * 175.49447 * 13 11 2 16 16 C 1.40017 * 119.89352 * 221.64978 * 15 13 11 17 17 C 1.36314 * 120.10388 * 179.75797 * 16 15 13 18 18 C 1.40892 * 119.89084 * 0.52067 * 17 16 15 19 19 C 1.41116 * 120.10212 * 179.71718 * 18 17 16 20 20 H 1.08003 * 119.99423 * 209.07455 * 19 18 17 21 21 C 1.40225 * 120.00239 * 29.07246 * 19 18 17 22 22 N 1.30655 * 119.99749 * 10.59723 * 21 19 18 23 23 Si 1.86794 * 120.00061 * 190.59669 * 21 19 18 24 24 H 1.48495 * 109.47176 * 90.00047 * 23 21 19 25 25 H 1.48500 * 109.47085 * 210.00064 * 23 21 19 26 26 H 1.48496 * 109.47124 * 330.00023 * 23 21 19 27 27 C 1.40881 * 119.79393 * 359.73365 * 18 17 16 28 28 C 1.36323 * 119.89390 * 0.02562 * 27 18 17 29 29 H 1.08996 * 109.47437 * 300.00528 * 1 2 3 30 30 H 1.09005 * 109.46794 * 60.00275 * 1 2 3 31 31 H 1.08996 * 109.47112 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47199 * 60.00150 * 6 4 2 33 33 H 1.09004 * 109.47489 * 179.97438 * 6 4 2 34 34 H 1.08996 * 109.47411 * 300.00338 * 6 4 2 35 35 H 1.09001 * 109.47570 * 60.00445 * 8 7 4 36 36 H 1.09007 * 109.47081 * 180.02562 * 8 7 4 37 37 H 1.08998 * 109.47539 * 299.99878 * 8 7 4 38 38 H 1.08999 * 109.46386 * 95.24949 * 12 11 2 39 39 H 1.08997 * 109.47174 * 215.24407 * 12 11 2 40 40 H 1.08996 * 109.47216 * 335.25161 * 12 11 2 41 41 H 1.07993 * 119.94766 * 0.02562 * 16 15 13 42 42 H 1.08003 * 120.05699 * 180.23522 * 17 16 15 43 43 H 0.96998 * 119.99561 * 180.02562 * 22 21 19 44 44 H 1.08005 * 120.05795 * 179.97438 * 27 18 17 45 45 H 1.07992 * 119.94667 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 1.6054 -1.7199 -1.2952 6 6 3.5648 -0.8310 -1.1879 7 16 1.5601 0.2155 -2.7266 8 6 2.2552 -0.8021 -4.0577 9 8 0.1433 0.1967 -2.8343 10 8 2.2382 1.4642 -2.7109 11 7 2.0183 -0.6906 1.1961 12 6 1.6643 -2.0932 1.4280 13 6 2.7931 -0.0356 2.0833 14 8 3.1546 1.1020 1.8514 15 6 3.2030 -0.6993 3.3368 16 6 3.1935 0.0159 4.5405 17 6 3.5664 -0.5941 5.7012 18 6 3.9724 -1.9432 5.6864 19 6 4.3650 -2.5773 6.8844 20 1 5.0852 -3.3817 6.8585 21 6 3.8202 -2.1629 8.1082 22 7 2.8050 -1.3406 8.1264 23 14 4.5458 -2.7865 9.7125 24 1 5.6194 -1.8643 10.1618 25 1 3.4815 -2.8482 10.7463 26 1 5.1133 -4.1430 9.5049 27 6 3.9854 -2.6570 4.4719 28 6 3.6060 -2.0400 3.3170 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 3.8532 -1.3940 -0.3002 33 1 3.9282 -1.3453 -2.0777 34 1 3.9994 0.1675 -1.1420 35 1 1.8146 -1.7984 -4.0213 36 1 2.0338 -0.3415 -5.0206 37 1 3.3352 -0.8775 -3.9313 38 1 2.4615 -2.7356 1.0539 39 1 1.5325 -2.2627 2.4966 40 1 0.7359 -2.3247 0.9061 41 1 2.8861 1.0511 4.5502 42 1 3.5551 -0.0428 6.6298 43 1 2.4284 -1.0537 8.9730 44 1 4.2962 -3.6912 4.4556 45 1 3.6161 -2.5863 2.3855 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270430194.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:48 Heat of formation + Delta-G solvation = -100.574374 kcal Electronic energy + Delta-G solvation = -27837.023579 eV Core-core repulsion = 23946.212681 eV Total energy + Delta-G solvation = -3890.810898 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.31078 -39.15972 -38.06677 -37.80297 -37.05076 -35.72635 -34.37487 -32.11663 -31.71090 -31.03297 -29.84465 -27.98500 -27.60368 -25.15969 -24.07179 -22.93338 -22.12876 -20.34333 -19.74798 -19.34760 -18.60811 -17.74509 -17.43681 -17.07723 -16.91207 -16.81017 -16.23477 -15.86493 -15.39577 -15.17752 -14.87970 -14.78833 -14.48074 -14.19826 -13.99775 -13.95632 -13.89938 -13.70389 -13.56330 -13.39366 -13.32334 -13.07973 -12.99060 -12.89517 -12.80949 -12.61033 -12.58655 -12.39287 -12.28716 -12.04388 -11.86204 -11.70550 -11.44311 -11.30050 -11.14891 -10.63290 -9.71942 -9.51730 -9.30992 -8.70130 -6.46995 -0.98663 0.53490 1.14381 1.39029 1.43461 1.52996 1.79848 1.92004 2.10207 2.18101 2.67368 2.76137 3.04153 3.31329 3.58325 3.66302 3.93142 4.04406 4.11403 4.16178 4.21363 4.27858 4.35445 4.37927 4.43294 4.61438 4.69248 4.71978 4.79935 4.89297 4.98238 5.00092 5.01401 5.05014 5.20208 5.21378 5.27068 5.28247 5.59525 5.61723 5.78189 5.98513 6.03057 6.23000 6.45074 6.59298 6.81696 6.91619 7.29354 8.24302 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.032708 B = 0.002421 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.843073 B =11564.564051 C =11706.695520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.148 3.852 3 H 0.075 0.925 4 C -0.578 4.578 5 H 0.183 0.817 6 C -0.145 4.145 7 S 2.411 3.589 8 C -0.629 4.629 9 O -0.966 6.966 10 O -0.987 6.987 11 N -0.595 5.595 12 C 0.067 3.933 13 C 0.573 3.427 14 O -0.600 6.600 15 C -0.274 4.274 16 C -0.061 4.061 17 C -0.192 4.192 18 C 0.099 3.901 19 C -0.480 4.480 20 H 0.089 0.911 21 C 0.031 3.969 22 N -0.817 5.817 23 Si 0.988 3.012 24 H -0.265 1.265 25 H -0.269 1.269 26 H -0.252 1.252 27 C -0.237 4.237 28 C -0.042 4.042 29 H 0.055 0.945 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.114 0.886 34 H 0.049 0.951 35 H 0.165 0.835 36 H 0.144 0.856 37 H 0.153 0.847 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.103 0.897 43 H 0.291 0.709 44 H 0.117 0.883 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.823 -7.736 -19.363 21.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.044 3.956 3 H 0.093 0.907 4 C -0.687 4.687 5 H 0.200 0.800 6 C -0.203 4.203 7 S 2.598 3.402 8 C -0.783 4.783 9 O -0.963 6.963 10 O -0.985 6.985 11 N -0.326 5.326 12 C -0.074 4.074 13 C 0.366 3.634 14 O -0.483 6.483 15 C -0.278 4.278 16 C -0.081 4.081 17 C -0.211 4.211 18 C 0.097 3.903 19 C -0.508 4.508 20 H 0.107 0.893 21 C -0.185 4.185 22 N -0.442 5.442 23 Si 0.809 3.191 24 H -0.189 1.189 25 H -0.193 1.193 26 H -0.175 1.175 27 C -0.257 4.257 28 C -0.061 4.061 29 H 0.074 0.926 30 H 0.108 0.892 31 H 0.115 0.885 32 H 0.088 0.912 33 H 0.132 0.868 34 H 0.068 0.932 35 H 0.183 0.817 36 H 0.162 0.838 37 H 0.171 0.829 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.118 0.882 41 H 0.102 0.898 42 H 0.120 0.880 43 H 0.102 0.898 44 H 0.135 0.865 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.330 -6.235 -19.372 20.622 hybrid contribution 0.503 -0.164 1.389 1.486 sum -2.827 -6.400 -17.983 19.296 Atomic orbital electron populations 1.22637 0.92795 1.05415 1.03982 1.20713 0.95030 0.96495 0.83401 0.90666 1.30552 1.07189 1.16177 1.14770 0.80004 1.21725 0.89432 1.03389 1.05735 1.07925 0.75337 0.77440 0.79531 1.30062 1.15279 1.16750 1.16200 1.93533 1.29235 1.87572 1.85992 1.93555 1.76702 1.41509 1.86687 1.47644 1.50115 1.13609 1.21247 1.22274 1.02425 0.79613 1.03122 1.18678 0.76712 0.84619 0.83371 1.90656 1.58166 1.21131 1.78369 1.19082 1.20039 0.96699 0.92017 1.20470 0.97631 0.97222 0.92736 1.20945 1.08033 0.95722 0.96435 1.18130 0.87409 0.91097 0.93713 1.20067 1.22406 1.16841 0.91476 0.89330 1.26940 0.93374 0.93433 1.04796 1.69786 1.17941 1.25994 1.30499 0.85094 0.78687 0.79909 0.75444 1.18944 1.19342 1.17499 1.20994 1.12005 0.99646 0.93023 1.20876 0.95172 0.91911 0.98109 0.92579 0.89151 0.88526 0.91161 0.86799 0.93210 0.81673 0.83801 0.82894 0.90119 0.91547 0.88223 0.89780 0.87950 0.89801 0.86505 0.84187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.46 8.82 71.98 0.63 -3.82 16 2 C 0.15 3.96 2.21 44.99 0.10 4.06 16 3 H 0.08 2.59 6.91 -2.39 -0.02 2.57 16 4 C -0.58 -9.45 2.12 30.59 0.06 -9.38 16 5 H 0.18 1.28 7.84 -2.39 -0.02 1.26 16 6 C -0.14 -2.47 8.73 71.98 0.63 -1.84 16 7 S 2.41 40.58 4.68 -56.49 -0.26 40.32 16 8 C -0.63 -2.90 10.17 113.37 1.15 -1.75 16 9 O -0.97 -21.07 15.46 -127.37 -1.97 -23.04 16 10 O -0.99 -27.23 17.91 -127.37 -2.28 -29.51 16 11 N -0.59 -17.91 1.79 -826.23 -1.48 -19.39 16 12 C 0.07 1.49 7.99 127.77 1.02 2.51 16 13 C 0.57 23.74 7.31 86.73 0.63 24.37 16 14 O -0.60 -29.46 16.28 -4.01 -0.07 -29.52 16 15 C -0.27 -12.17 5.16 -19.93 -0.10 -12.28 16 16 C -0.06 -3.08 9.58 22.25 0.21 -2.86 16 17 C -0.19 -10.17 8.60 22.47 0.19 -9.98 16 18 C 0.10 5.08 5.55 -21.28 -0.12 4.97 16 19 C -0.48 -24.07 9.05 23.46 0.21 -23.86 16 20 H 0.09 4.17 7.87 -2.91 -0.02 4.15 16 21 C 0.03 1.48 5.25 85.35 0.45 1.93 16 22 N -0.82 -41.25 10.84 21.87 0.24 -41.01 16 23 Si 0.99 35.94 29.57 68.60 2.03 37.97 16 24 H -0.26 -9.49 7.11 99.48 0.71 -8.79 16 25 H -0.27 -9.38 7.11 99.48 0.71 -8.67 16 26 H -0.25 -8.71 7.11 99.48 0.71 -8.00 16 27 C -0.24 -10.42 9.73 22.47 0.22 -10.20 16 28 C -0.04 -1.66 7.55 22.25 0.17 -1.49 16 29 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.09 2.12 5.40 -2.38 -0.01 2.11 16 31 H 0.10 1.67 6.67 -2.39 -0.02 1.65 16 32 H 0.07 1.40 7.26 -2.38 -0.02 1.38 16 33 H 0.11 0.76 6.56 -2.38 -0.02 0.75 16 34 H 0.05 1.16 8.06 -2.39 -0.02 1.14 16 35 H 0.17 -0.27 8.14 -2.39 -0.02 -0.29 16 36 H 0.14 0.46 8.14 -2.39 -0.02 0.45 16 37 H 0.15 0.18 6.87 -2.39 -0.02 0.17 16 38 H 0.08 1.38 6.69 -2.39 -0.02 1.37 16 39 H 0.07 1.84 6.02 -2.39 -0.01 1.82 16 40 H 0.10 1.51 6.44 -2.39 -0.02 1.49 16 41 H 0.08 4.25 8.06 -2.91 -0.02 4.23 16 42 H 0.10 5.72 6.22 -2.91 -0.02 5.70 16 43 H 0.29 13.30 8.29 -92.71 -0.77 12.53 16 44 H 0.12 4.58 8.06 -2.91 -0.02 4.56 16 45 H 0.14 4.20 5.54 -2.91 -0.02 4.18 16 Total: -1.00 -79.29 368.82 2.69 -76.61 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: 1.01 Total: 27.21 kcal Atomic # 6 Polarization: -45.09 SS G_CDS: 5.47 Total: -39.62 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: -1.24 Total: -60.40 kcal Atomic # 8 Polarization: -77.76 SS G_CDS: -4.32 Total: -82.08 kcal Atomic # 14 Polarization: 35.94 SS G_CDS: 2.03 Total: 37.97 kcal Atomic # 16 Polarization: 40.58 SS G_CDS: -0.26 Total: 40.32 kcal Total: -79.29 2.69 -76.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270430194.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.967 kcal (2) G-P(sol) polarization free energy of solvation -79.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds