Wall clock time and date at job start Sat Apr 11 2020 05:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46506 * 2 1 4 4 C 1.52997 * 109.47010 * 240.00591 * 2 1 3 5 5 H 1.09005 * 109.46813 * 299.99842 * 4 2 1 6 6 C 1.52992 * 109.47099 * 179.97438 * 4 2 1 7 7 N 1.46499 * 109.47208 * 59.99469 * 4 2 1 8 8 C 1.46500 * 120.00076 * 60.00154 * 7 4 2 9 9 C 1.34784 * 119.99902 * 240.00106 * 7 4 2 10 10 O 1.21585 * 119.99898 * 354.07206 * 9 7 4 11 11 C 1.47639 * 119.99791 * 174.07837 * 9 7 4 12 12 C 1.40011 * 119.89906 * 325.02806 * 11 9 7 13 13 C 1.36314 * 120.11233 * 180.23288 * 12 11 9 14 14 C 1.40891 * 119.88596 * 359.52455 * 13 12 11 15 15 C 1.41107 * 120.10247 * 180.20845 * 14 13 12 16 16 H 1.08002 * 120.00569 * 215.02813 * 15 14 13 17 17 C 1.40224 * 119.99988 * 35.01901 * 15 14 13 18 18 N 1.30645 * 120.00227 * 5.17466 * 17 15 14 19 19 Si 1.86803 * 120.00210 * 185.17190 * 17 15 14 20 20 H 1.48498 * 109.46989 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47081 * 120.00159 * 19 17 15 22 22 H 1.48501 * 109.47110 * 240.00447 * 19 17 15 23 23 C 1.40885 * 119.79512 * 0.47593 * 14 13 12 24 24 C 1.36314 * 119.89444 * 359.75568 * 23 14 13 25 25 S 1.81392 * 109.47428 * 120.00039 * 2 1 3 26 26 C 1.81399 * 101.92162 * 305.00122 * 25 2 1 27 27 O 1.42100 * 108.57623 * 59.48701 * 25 2 1 28 28 O 1.42091 * 108.58024 * 190.51332 * 25 2 1 29 29 H 1.09003 * 109.46951 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46814 * 299.99166 * 1 2 3 31 31 H 1.08998 * 109.47267 * 59.99725 * 1 2 3 32 32 H 1.09002 * 109.47622 * 180.02562 * 6 4 2 33 33 H 1.09003 * 109.46997 * 299.99208 * 6 4 2 34 34 H 1.08992 * 109.47773 * 59.99469 * 6 4 2 35 35 H 1.08999 * 109.47096 * 274.77775 * 8 7 4 36 36 H 1.08997 * 109.47028 * 34.78495 * 8 7 4 37 37 H 1.09001 * 109.46987 * 154.77644 * 8 7 4 38 38 H 1.08002 * 119.94412 * 359.96471 * 12 11 9 39 39 H 1.07996 * 120.05670 * 179.75030 * 13 12 11 40 40 H 0.97000 * 120.00301 * 179.97438 * 18 17 15 41 41 H 1.08005 * 120.05438 * 179.72739 * 23 14 13 42 42 H 1.07992 * 119.94901 * 180.02562 * 24 23 14 43 43 H 1.08997 * 109.47208 * 60.00345 * 26 25 2 44 44 H 1.09005 * 109.47091 * 179.97438 * 26 25 2 45 45 H 1.08995 * 109.47669 * 300.00011 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 1 1.6767 -1.7488 -1.2493 6 6 3.5699 -0.7206 -1.2496 7 7 1.5516 -0.0305 -2.4454 8 6 1.9054 1.3721 -2.6772 9 6 0.7767 -0.6855 -3.3326 10 8 0.5715 -1.8763 -3.1977 11 6 0.1771 0.0430 -4.4682 12 6 -0.2404 1.3693 -4.3043 13 6 -0.7989 2.0445 -5.3485 14 6 -0.9465 1.4087 -6.5971 15 6 -1.5200 2.1047 -7.6823 16 1 -2.1384 1.5791 -8.3949 17 6 -1.2871 3.4790 -7.8356 18 7 -0.4593 4.0947 -7.0340 19 14 -2.1604 4.4295 -9.1859 20 1 -3.0386 3.5083 -9.9510 21 1 -2.9826 5.5075 -8.5801 22 1 -1.1545 5.0282 -10.0997 23 6 -0.5249 0.0739 -6.7572 24 6 0.0281 -0.5946 -5.7058 25 16 2.1348 -0.8551 1.4810 26 6 1.2999 0.0576 2.8078 27 8 1.6409 -2.1874 1.4679 28 8 3.5342 -0.6349 1.5912 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 3.9333 -1.2339 -2.1399 33 1 3.9329 0.3073 -1.2499 34 1 3.9337 -1.2341 -0.3598 35 1 1.2019 2.0163 -2.1497 36 1 2.9145 1.5579 -2.3093 37 1 1.8632 1.5858 -3.7452 38 1 -0.1238 1.8569 -3.3477 39 1 -1.1243 3.0662 -5.2199 40 1 -0.2980 5.0452 -7.1402 41 1 -0.6401 -0.4190 -7.7113 42 1 0.3519 -1.6176 -5.8277 43 1 0.2204 -0.0211 2.6795 44 1 1.5824 -0.3641 3.7725 45 1 1.5949 1.1062 2.7690 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270430196.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:52 Heat of formation + Delta-G solvation = -78.860828 kcal Electronic energy + Delta-G solvation = -27939.126295 eV Core-core repulsion = 24049.256967 eV Total energy + Delta-G solvation = -3889.869328 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.86866 -37.53460 -37.22638 -36.46016 -36.15922 -33.95926 -33.24583 -31.16218 -29.89067 -29.58513 -29.14026 -26.69756 -25.95008 -24.26670 -22.66823 -21.06022 -20.81045 -18.98161 -18.95716 -17.51939 -17.44191 -16.68284 -16.22506 -16.04828 -15.84108 -15.37497 -14.94724 -14.39541 -14.19106 -13.96872 -13.71303 -13.55071 -13.43022 -13.31442 -12.91167 -12.82682 -12.62604 -12.56176 -12.22842 -12.19094 -12.08501 -11.93291 -11.85480 -11.71939 -11.47938 -11.43715 -11.28664 -11.21492 -11.00390 -10.94409 -10.66516 -10.52610 -10.01267 -9.55552 -9.45378 -9.04020 -8.39303 -7.74434 -7.47461 -6.94292 -4.63852 -0.28355 2.20367 2.46121 2.90494 2.93601 2.96509 3.01371 3.26272 3.43666 3.67875 3.73584 3.78821 4.17254 4.34698 4.45658 4.51881 4.68247 4.87944 5.11943 5.17558 5.23357 5.34064 5.41535 5.44037 5.54432 5.57947 5.64933 5.73886 5.98168 6.00859 6.07570 6.09810 6.20807 6.21432 6.72448 6.78616 6.86368 6.98060 7.07538 7.42057 7.51730 7.71618 7.83926 7.93923 8.05671 8.39317 8.63798 8.71183 8.84544 9.99332 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.024516 B = 0.002606 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.827155 B =10741.405352 C =11144.342543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.584 4.584 3 H 0.139 0.861 4 C 0.159 3.841 5 H 0.115 0.885 6 C -0.191 4.191 7 N -0.608 5.608 8 C 0.075 3.925 9 C 0.575 3.425 10 O -0.561 6.561 11 C -0.268 4.268 12 C -0.073 4.073 13 C -0.164 4.164 14 C 0.130 3.870 15 C -0.454 4.454 16 H 0.082 0.918 17 C 0.073 3.927 18 N -0.792 5.792 19 Si 0.916 3.084 20 H -0.259 1.259 21 H -0.271 1.271 22 H -0.272 1.272 23 C -0.227 4.227 24 C -0.033 4.033 25 S 2.420 3.580 26 C -0.657 4.657 27 O -0.933 6.933 28 O -0.938 6.938 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.052 0.948 36 H 0.060 0.940 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.120 0.880 40 H 0.283 0.717 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.132 0.868 44 H 0.129 0.871 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.776 0.776 14.821 15.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.694 4.694 3 H 0.157 0.843 4 C 0.053 3.947 5 H 0.133 0.867 6 C -0.249 4.249 7 N -0.342 5.342 8 C -0.067 4.067 9 C 0.370 3.630 10 O -0.441 6.441 11 C -0.273 4.273 12 C -0.092 4.092 13 C -0.183 4.183 14 C 0.127 3.873 15 C -0.483 4.483 16 H 0.100 0.900 17 C -0.146 4.146 18 N -0.417 5.417 19 Si 0.740 3.260 20 H -0.183 1.183 21 H -0.196 1.196 22 H -0.198 1.198 23 C -0.246 4.246 24 C -0.052 4.052 25 S 2.601 3.399 26 C -0.807 4.807 27 O -0.930 6.930 28 O -0.935 6.935 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.112 0.888 38 H 0.117 0.883 39 H 0.137 0.863 40 H 0.094 0.906 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.150 0.850 44 H 0.147 0.853 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.355 -0.320 14.992 15.615 hybrid contribution -0.764 1.566 -0.601 1.843 sum 3.591 1.245 14.391 14.884 Atomic orbital electron populations 1.21690 0.89533 1.04518 1.04294 1.30596 1.07701 1.14090 1.17024 0.84282 1.20595 0.94006 0.97752 0.82307 0.86704 1.22588 0.94180 1.03888 1.04222 1.47675 1.52004 1.12668 1.21846 1.22061 0.99402 0.81228 1.04057 1.18828 0.76390 0.86217 0.81525 1.90664 1.62260 1.15738 1.75457 1.18880 1.17874 0.96122 0.94399 1.20759 0.97911 0.92517 0.98010 1.21007 1.04801 1.00492 0.91985 1.17808 0.86575 0.90697 0.92176 1.19777 1.26651 0.92958 1.08919 0.89955 1.25991 0.93639 0.97891 0.97044 1.69682 1.26623 1.11478 1.33947 0.86130 0.79857 0.79549 0.80490 1.18304 1.19650 1.19766 1.20834 1.08662 0.97361 0.97783 1.20315 0.95876 0.97140 0.91858 1.08018 0.76295 0.77089 0.78459 1.30292 1.15361 1.15690 1.19342 1.93610 1.81836 1.31807 1.85718 1.93590 1.27763 1.86582 1.85524 0.90360 0.91462 0.89653 0.90676 0.91109 0.90258 0.92997 0.92167 0.88779 0.88320 0.86261 0.90620 0.88267 0.88477 0.84989 0.85271 0.85233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 8.74 37.16 0.32 -1.10 16 2 C -0.58 -5.81 2.25 -26.73 -0.06 -5.87 16 3 H 0.14 1.00 7.67 -51.92 -0.40 0.60 16 4 C 0.16 2.19 2.21 -67.94 -0.15 2.04 16 5 H 0.12 1.84 6.91 -51.93 -0.36 1.48 16 6 C -0.19 -2.37 8.63 37.15 0.32 -2.05 16 7 N -0.61 -9.59 1.99 -175.13 -0.35 -9.94 16 8 C 0.08 1.02 7.91 59.85 0.47 1.49 16 9 C 0.58 11.58 7.35 -12.42 -0.09 11.49 16 10 O -0.56 -12.85 16.15 5.29 0.09 -12.76 16 11 C -0.27 -5.78 5.18 -104.73 -0.54 -6.33 16 12 C -0.07 -1.52 7.52 -39.61 -0.30 -1.82 16 13 C -0.16 -3.82 8.56 -39.27 -0.34 -4.16 16 14 C 0.13 3.22 5.50 -106.80 -0.59 2.63 16 15 C -0.45 -11.13 9.03 -37.75 -0.34 -11.47 16 16 H 0.08 1.95 7.86 -52.49 -0.41 1.54 16 17 C 0.07 1.68 5.31 -17.31 -0.09 1.59 16 18 N -0.79 -18.66 10.98 55.56 0.61 -18.05 16 19 Si 0.92 17.34 29.56 -169.99 -5.03 12.31 16 20 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 21 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 22 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 23 C -0.23 -5.31 9.73 -39.27 -0.38 -5.70 16 24 C -0.03 -0.74 9.54 -39.61 -0.38 -1.12 16 25 S 2.42 23.17 4.41 -107.50 -0.47 22.70 16 26 C -0.66 -3.51 10.01 101.05 1.01 -2.50 16 27 O -0.93 -12.56 18.06 -57.83 -1.04 -13.61 16 28 O -0.94 -11.21 15.71 -57.83 -0.91 -12.12 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.41 6.39 -51.93 -0.33 0.08 16 31 H 0.08 1.02 7.60 -51.93 -0.39 0.62 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.07 0.76 6.69 -51.93 -0.35 0.41 16 34 H 0.08 0.96 5.52 -51.93 -0.29 0.68 16 35 H 0.05 0.62 7.02 -51.93 -0.36 0.25 16 36 H 0.06 0.66 6.44 -51.93 -0.33 0.33 16 37 H 0.09 1.50 5.76 -51.93 -0.30 1.20 16 38 H 0.10 1.76 5.48 -52.49 -0.29 1.47 16 39 H 0.12 2.86 6.50 -52.49 -0.34 2.52 16 40 H 0.28 6.03 8.29 -40.82 -0.34 5.69 16 41 H 0.10 2.18 8.06 -52.48 -0.42 1.76 16 42 H 0.10 2.11 7.99 -52.49 -0.42 1.69 16 43 H 0.13 0.53 6.77 -51.93 -0.35 0.18 16 44 H 0.13 0.57 8.14 -51.92 -0.42 0.15 16 45 H 0.13 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 369.19 15.07 5.56 5.56 Total: -1.00 -32.10 369.19 -8.85 -40.95 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -6.18 Total: 7.80 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: -1.13 Total: -22.85 kcal Atomic # 7 Polarization: -28.25 SS G_CDS: 0.26 Total: -27.99 kcal Atomic # 8 Polarization: -36.62 SS G_CDS: -1.87 Total: -38.48 kcal Atomic # 14 Polarization: 17.34 SS G_CDS: -5.03 Total: 12.31 kcal Atomic # 16 Polarization: 23.17 SS G_CDS: -0.47 Total: 22.70 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.10 -8.85 -40.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270430196.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.915 kcal (2) G-P(sol) polarization free energy of solvation -32.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds