Wall clock time and date at job start Sat Apr 11 2020 05:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46506 * 2 1 4 4 C 1.52997 * 109.47010 * 240.00591 * 2 1 3 5 5 H 1.09005 * 109.46813 * 299.99842 * 4 2 1 6 6 C 1.52992 * 109.47099 * 179.97438 * 4 2 1 7 7 N 1.46499 * 109.47208 * 59.99469 * 4 2 1 8 8 C 1.46500 * 120.00076 * 60.00154 * 7 4 2 9 9 C 1.34784 * 119.99902 * 240.00106 * 7 4 2 10 10 O 1.21585 * 119.99898 * 354.07206 * 9 7 4 11 11 C 1.47639 * 119.99791 * 174.07837 * 9 7 4 12 12 C 1.40011 * 119.89906 * 325.02806 * 11 9 7 13 13 C 1.36314 * 120.11233 * 180.23288 * 12 11 9 14 14 C 1.40891 * 119.88596 * 359.52455 * 13 12 11 15 15 C 1.41107 * 120.10247 * 180.20845 * 14 13 12 16 16 H 1.08002 * 120.00569 * 215.02813 * 15 14 13 17 17 C 1.40224 * 119.99988 * 35.01901 * 15 14 13 18 18 N 1.30645 * 120.00227 * 5.17466 * 17 15 14 19 19 Si 1.86803 * 120.00210 * 185.17190 * 17 15 14 20 20 H 1.48498 * 109.46989 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47081 * 120.00159 * 19 17 15 22 22 H 1.48501 * 109.47110 * 240.00447 * 19 17 15 23 23 C 1.40885 * 119.79512 * 0.47593 * 14 13 12 24 24 C 1.36314 * 119.89444 * 359.75568 * 23 14 13 25 25 S 1.81392 * 109.47428 * 120.00039 * 2 1 3 26 26 C 1.81399 * 101.92162 * 305.00122 * 25 2 1 27 27 O 1.42100 * 108.57623 * 59.48701 * 25 2 1 28 28 O 1.42091 * 108.58024 * 190.51332 * 25 2 1 29 29 H 1.09003 * 109.46951 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46814 * 299.99166 * 1 2 3 31 31 H 1.08998 * 109.47267 * 59.99725 * 1 2 3 32 32 H 1.09002 * 109.47622 * 180.02562 * 6 4 2 33 33 H 1.09003 * 109.46997 * 299.99208 * 6 4 2 34 34 H 1.08992 * 109.47773 * 59.99469 * 6 4 2 35 35 H 1.08999 * 109.47096 * 274.77775 * 8 7 4 36 36 H 1.08997 * 109.47028 * 34.78495 * 8 7 4 37 37 H 1.09001 * 109.46987 * 154.77644 * 8 7 4 38 38 H 1.08002 * 119.94412 * 359.96471 * 12 11 9 39 39 H 1.07996 * 120.05670 * 179.75030 * 13 12 11 40 40 H 0.97000 * 120.00301 * 179.97438 * 18 17 15 41 41 H 1.08005 * 120.05438 * 179.72739 * 23 14 13 42 42 H 1.07992 * 119.94901 * 180.02562 * 24 23 14 43 43 H 1.08997 * 109.47208 * 60.00345 * 26 25 2 44 44 H 1.09005 * 109.47091 * 179.97438 * 26 25 2 45 45 H 1.08995 * 109.47669 * 300.00011 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 1 1.6767 -1.7488 -1.2493 6 6 3.5699 -0.7206 -1.2496 7 7 1.5516 -0.0305 -2.4454 8 6 1.9054 1.3721 -2.6772 9 6 0.7767 -0.6855 -3.3326 10 8 0.5715 -1.8763 -3.1977 11 6 0.1771 0.0430 -4.4682 12 6 -0.2404 1.3693 -4.3043 13 6 -0.7989 2.0445 -5.3485 14 6 -0.9465 1.4087 -6.5971 15 6 -1.5200 2.1047 -7.6823 16 1 -2.1384 1.5791 -8.3949 17 6 -1.2871 3.4790 -7.8356 18 7 -0.4593 4.0947 -7.0340 19 14 -2.1604 4.4295 -9.1859 20 1 -3.0386 3.5083 -9.9510 21 1 -2.9826 5.5075 -8.5801 22 1 -1.1545 5.0282 -10.0997 23 6 -0.5249 0.0739 -6.7572 24 6 0.0281 -0.5946 -5.7058 25 16 2.1348 -0.8551 1.4810 26 6 1.2999 0.0576 2.8078 27 8 1.6409 -2.1874 1.4679 28 8 3.5342 -0.6349 1.5912 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 3.9333 -1.2339 -2.1399 33 1 3.9329 0.3073 -1.2499 34 1 3.9337 -1.2341 -0.3598 35 1 1.2019 2.0163 -2.1497 36 1 2.9145 1.5579 -2.3093 37 1 1.8632 1.5858 -3.7452 38 1 -0.1238 1.8569 -3.3477 39 1 -1.1243 3.0662 -5.2199 40 1 -0.2980 5.0452 -7.1402 41 1 -0.6401 -0.4190 -7.7113 42 1 0.3519 -1.6176 -5.8277 43 1 0.2204 -0.0211 2.6795 44 1 1.5824 -0.3641 3.7725 45 1 1.5949 1.1062 2.7690 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270430196.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:51 Heat of formation + Delta-G solvation = -99.784565 kcal Electronic energy + Delta-G solvation = -27940.033616 eV Core-core repulsion = 24049.256967 eV Total energy + Delta-G solvation = -3890.776649 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.32697 -39.16243 -38.06137 -37.82161 -37.06084 -35.65284 -34.47520 -32.26576 -31.39502 -31.26415 -29.79143 -27.98849 -27.60864 -25.17776 -24.11074 -22.81897 -22.23384 -20.35180 -19.73463 -19.30457 -18.57550 -17.79137 -17.39426 -17.23816 -16.85228 -16.77456 -16.18481 -15.86528 -15.42879 -15.17874 -14.90325 -14.76094 -14.45431 -14.29057 -14.01611 -13.95730 -13.91649 -13.65567 -13.53603 -13.44781 -13.34284 -13.06894 -12.98956 -12.93228 -12.84444 -12.66711 -12.57521 -12.38390 -12.32541 -12.04849 -11.87701 -11.71428 -11.40689 -11.31413 -11.14996 -10.64004 -9.71182 -9.52393 -9.27114 -8.66944 -6.47813 -0.98987 0.48472 1.11965 1.41188 1.41975 1.55056 1.78794 1.96478 2.08076 2.20907 2.67094 2.78467 3.03586 3.31713 3.55717 3.63313 3.92971 4.01173 4.10917 4.16147 4.17160 4.26299 4.33300 4.39872 4.43350 4.58613 4.65343 4.70339 4.73041 4.88353 4.94201 4.98942 4.99972 5.08106 5.14484 5.17491 5.24488 5.30156 5.55992 5.63795 5.77921 5.95022 6.02298 6.26056 6.43347 6.58062 6.83093 6.90108 7.28679 8.29167 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.024516 B = 0.002606 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.827155 B =10741.405352 C =11144.342543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.581 4.581 3 H 0.177 0.823 4 C 0.150 3.850 5 H 0.082 0.918 6 C -0.189 4.189 7 N -0.596 5.596 8 C 0.067 3.933 9 C 0.573 3.427 10 O -0.599 6.599 11 C -0.271 4.271 12 C -0.056 4.056 13 C -0.179 4.179 14 C 0.104 3.896 15 C -0.488 4.488 16 H 0.078 0.922 17 C 0.037 3.963 18 N -0.816 5.816 19 Si 0.986 3.014 20 H -0.262 1.262 21 H -0.261 1.261 22 H -0.267 1.267 23 C -0.241 4.241 24 C -0.045 4.045 25 S 2.417 3.583 26 C -0.632 4.632 27 O -0.984 6.984 28 O -0.966 6.966 29 H 0.055 0.945 30 H 0.114 0.886 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.069 0.931 38 H 0.133 0.867 39 H 0.112 0.888 40 H 0.292 0.708 41 H 0.102 0.898 42 H 0.098 0.902 43 H 0.152 0.848 44 H 0.145 0.855 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.883 3.625 17.252 18.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.690 4.690 3 H 0.195 0.805 4 C 0.045 3.955 5 H 0.100 0.900 6 C -0.247 4.247 7 N -0.327 5.327 8 C -0.074 4.074 9 C 0.367 3.633 10 O -0.482 6.482 11 C -0.275 4.275 12 C -0.075 4.075 13 C -0.198 4.198 14 C 0.101 3.899 15 C -0.517 4.517 16 H 0.096 0.904 17 C -0.179 4.179 18 N -0.441 5.441 19 Si 0.807 3.193 20 H -0.186 1.186 21 H -0.186 1.186 22 H -0.191 1.191 23 C -0.261 4.261 24 C -0.064 4.064 25 S 2.603 3.397 26 C -0.786 4.786 27 O -0.982 6.982 28 O -0.963 6.963 29 H 0.074 0.926 30 H 0.133 0.867 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.113 0.887 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.112 0.888 37 H 0.088 0.912 38 H 0.151 0.849 39 H 0.130 0.870 40 H 0.103 0.897 41 H 0.120 0.880 42 H 0.116 0.884 43 H 0.171 0.829 44 H 0.163 0.837 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 4.514 2.522 17.418 18.169 hybrid contribution -0.727 0.654 -1.194 1.543 sum 3.787 3.176 16.224 16.960 Atomic orbital electron populations 1.21771 0.89445 1.03617 1.05710 1.30579 1.07714 1.15591 1.15118 0.80542 1.20708 0.94865 0.96693 0.83205 0.89973 1.22588 0.93113 1.05256 1.03744 1.47598 1.50160 1.13455 1.21500 1.22259 1.02192 0.79886 1.03084 1.18638 0.77035 0.85720 0.81930 1.90647 1.63884 1.17195 1.76468 1.19147 1.17268 0.96528 0.94544 1.20974 0.95880 0.91896 0.98729 1.21005 1.06075 1.00425 0.92328 1.18129 0.87357 0.91289 0.93102 1.19978 1.27953 0.94312 1.09473 0.90408 1.26747 0.93918 0.98053 0.99169 1.69706 1.27031 1.12246 1.35119 0.85088 0.78678 0.78022 0.77550 1.18553 1.18578 1.19129 1.20945 1.09351 0.97481 0.98307 1.20462 0.96101 0.97364 0.92494 1.07813 0.75948 0.76678 0.79293 1.30093 1.15703 1.16439 1.16383 1.93554 1.82367 1.35592 1.86642 1.93550 1.29878 1.86869 1.86017 0.92584 0.86727 0.91528 0.92017 0.88714 0.90018 0.90327 0.88841 0.91249 0.84925 0.86966 0.89672 0.87993 0.88386 0.82927 0.83679 0.81853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 8.74 71.98 0.63 -1.94 16 2 C -0.58 -9.98 2.25 30.60 0.07 -9.92 16 3 H 0.18 1.64 7.67 -2.39 -0.02 1.62 16 4 C 0.15 4.03 2.21 44.99 0.10 4.13 16 5 H 0.08 2.77 6.91 -2.38 -0.02 2.75 16 6 C -0.19 -4.51 8.63 71.98 0.62 -3.89 16 7 N -0.60 -18.21 1.99 -826.24 -1.65 -19.86 16 8 C 0.07 1.64 7.91 127.77 1.01 2.65 16 9 C 0.57 23.41 7.35 86.72 0.64 24.05 16 10 O -0.60 -28.53 16.15 -3.98 -0.06 -28.60 16 11 C -0.27 -11.84 5.18 -19.93 -0.10 -11.94 16 12 C -0.06 -2.32 7.52 22.25 0.17 -2.15 16 13 C -0.18 -8.47 8.56 22.47 0.19 -8.28 16 14 C 0.10 5.30 5.50 -21.28 -0.12 5.18 16 15 C -0.49 -24.63 9.03 23.46 0.21 -24.42 16 16 H 0.08 3.83 7.86 -2.91 -0.02 3.81 16 17 C 0.04 1.73 5.31 85.35 0.45 2.18 16 18 N -0.82 -38.40 10.98 21.87 0.24 -38.16 16 19 Si 0.99 35.27 29.56 68.60 2.03 37.29 16 20 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 21 H -0.26 -8.87 7.11 99.48 0.71 -8.16 16 22 H -0.27 -9.22 7.11 99.48 0.71 -8.51 16 23 C -0.24 -11.80 9.73 22.47 0.22 -11.58 16 24 C -0.04 -2.11 9.54 22.25 0.21 -1.90 16 25 S 2.42 41.11 4.41 -56.49 -0.25 40.86 16 26 C -0.63 -3.43 10.01 113.37 1.14 -2.29 16 27 O -0.98 -26.57 18.06 -127.37 -2.30 -28.87 16 28 O -0.97 -21.23 15.71 -127.37 -2.00 -23.23 16 29 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.11 0.84 6.39 -2.39 -0.02 0.83 16 31 H 0.07 1.43 7.60 -2.39 -0.02 1.41 16 32 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.09 1.76 6.69 -2.39 -0.02 1.75 16 34 H 0.08 1.95 5.52 -2.39 -0.01 1.93 16 35 H 0.08 1.54 7.02 -2.39 -0.02 1.52 16 36 H 0.09 1.69 6.44 -2.39 -0.02 1.67 16 37 H 0.07 2.10 5.76 -2.39 -0.01 2.09 16 38 H 0.13 4.44 5.48 -2.91 -0.02 4.42 16 39 H 0.11 5.43 6.50 -2.91 -0.02 5.41 16 40 H 0.29 12.28 8.29 -92.71 -0.77 11.51 16 41 H 0.10 4.74 8.06 -2.91 -0.02 4.72 16 42 H 0.10 4.47 7.99 -2.91 -0.02 4.45 16 43 H 0.15 0.33 6.77 -2.39 -0.02 0.32 16 44 H 0.14 0.54 8.14 -2.39 -0.02 0.52 16 45 H 0.16 -0.07 8.14 -2.39 -0.02 -0.09 16 Total: -1.00 -75.01 369.19 2.45 -72.56 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: 1.01 Total: 28.12 kcal Atomic # 6 Polarization: -45.56 SS G_CDS: 5.44 Total: -40.12 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: -1.41 Total: -58.02 kcal Atomic # 8 Polarization: -76.33 SS G_CDS: -4.37 Total: -80.69 kcal Atomic # 14 Polarization: 35.27 SS G_CDS: 2.03 Total: 37.29 kcal Atomic # 16 Polarization: 41.11 SS G_CDS: -0.25 Total: 40.86 kcal Total: -75.01 2.45 -72.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270430196.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.225 kcal (2) G-P(sol) polarization free energy of solvation -75.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds