Wall clock time and date at job start Sat Apr 11 2020 05:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46404 * 2 1 4 4 C 1.52994 * 109.47460 * 239.99771 * 2 1 3 5 5 H 1.08998 * 109.47032 * 300.32341 * 4 2 1 6 6 C 1.53001 * 109.46993 * 60.32455 * 4 2 1 7 7 S 1.81405 * 109.47159 * 180.32187 * 4 2 1 8 8 C 1.81400 * 101.92190 * 185.26780 * 7 4 2 9 9 O 1.42096 * 108.57724 * 299.76185 * 7 4 2 10 10 O 1.42104 * 108.57763 * 70.78262 * 7 4 2 11 11 N 1.46496 * 109.46973 * 119.99114 * 2 1 3 12 12 C 1.46504 * 119.99671 * 55.16528 * 11 2 1 13 13 C 1.34770 * 120.00487 * 235.43474 * 11 2 1 14 14 O 1.21592 * 119.99913 * 5.41593 * 13 11 2 15 15 C 1.47644 * 120.00434 * 185.41933 * 13 11 2 16 16 C 1.40013 * 119.89754 * 214.76963 * 15 13 11 17 17 C 1.36318 * 120.10751 * 179.75503 * 16 15 13 18 18 C 1.40886 * 119.88947 * 0.51547 * 17 16 15 19 19 C 1.41106 * 120.10145 * 179.71601 * 18 17 16 20 20 H 1.07999 * 120.00251 * 214.30696 * 19 18 17 21 21 C 1.40230 * 120.00077 * 34.30948 * 19 18 17 22 22 N 1.30644 * 119.99945 * 5.53254 * 21 19 18 23 23 Si 1.86795 * 120.00131 * 185.53701 * 21 19 18 24 24 H 1.48501 * 109.47142 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47447 * 119.99829 * 23 21 19 26 26 H 1.48498 * 109.47064 * 239.99846 * 23 21 19 27 27 C 1.40886 * 119.79737 * 359.73750 * 18 17 16 28 28 C 1.36317 * 119.88764 * 359.97438 * 27 18 17 29 29 H 1.09004 * 109.47168 * 60.01033 * 1 2 3 30 30 H 1.09010 * 109.46521 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47820 * 300.00186 * 1 2 3 32 32 H 1.08998 * 109.47325 * 60.00065 * 6 4 2 33 33 H 1.09010 * 109.46997 * 179.97438 * 6 4 2 34 34 H 1.08999 * 109.47531 * 299.99802 * 6 4 2 35 35 H 1.09001 * 109.46518 * 60.00617 * 8 7 4 36 36 H 1.08997 * 109.46867 * 179.97438 * 8 7 4 37 37 H 1.08996 * 109.47416 * 300.00569 * 8 7 4 38 38 H 1.08999 * 109.47349 * 94.25630 * 12 11 2 39 39 H 1.08996 * 109.47276 * 214.25623 * 12 11 2 40 40 H 1.08997 * 109.47298 * 334.25511 * 12 11 2 41 41 H 1.07997 * 119.94569 * 0.02562 * 16 15 13 42 42 H 1.08001 * 120.05464 * 180.22799 * 17 16 15 43 43 H 0.97006 * 120.00130 * 180.02562 * 22 21 19 44 44 H 1.07993 * 120.05728 * 179.97438 * 27 18 17 45 45 H 1.08009 * 119.94448 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 1 1.6721 -1.7472 -1.2520 6 6 1.5368 0.0047 -2.4984 7 16 3.8541 -0.7295 -1.2443 8 6 4.2298 -1.4709 -2.8567 9 8 4.3130 0.6153 -1.2462 10 8 4.3001 -1.6133 -0.2247 11 7 2.0183 -0.6904 1.1963 12 6 1.5791 -2.0583 1.4830 13 6 2.8672 -0.0653 2.0358 14 8 3.1508 1.1031 1.8550 15 6 3.4529 -0.7993 3.1752 16 6 3.6930 -0.1350 4.3841 17 6 4.2290 -0.8097 5.4404 18 6 4.5516 -2.1750 5.3106 19 6 5.1122 -2.8762 6.3993 20 1 5.8367 -3.6575 6.2229 21 6 4.7286 -2.5588 7.7102 22 7 3.7749 -1.6908 7.9196 23 14 5.5812 -3.3768 9.1569 24 1 6.6180 -4.3140 8.6551 25 1 6.2203 -2.3395 10.0060 26 1 4.5829 -4.1276 9.9599 27 6 4.3132 -2.8379 4.0906 28 6 3.7713 -2.1562 3.0417 29 1 -0.3634 0.5137 -0.8901 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.9048 1.0306 -2.4955 33 1 1.9006 -0.5090 -3.3884 34 1 0.4468 0.0097 -2.5014 35 1 3.8071 -0.8521 -3.6483 36 1 5.3104 -1.5350 -2.9841 37 1 3.7976 -2.4702 -2.9067 38 1 2.3058 -2.7649 1.0820 39 1 1.4964 -2.1949 2.5612 40 1 0.6084 -2.2331 1.0192 41 1 3.4491 0.9126 4.4813 42 1 4.4104 -0.2973 6.3736 43 1 3.5097 -1.4709 8.8265 44 1 4.5592 -3.8842 3.9864 45 1 3.5885 -2.6634 2.1058 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270430200.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:59 Heat of formation + Delta-G solvation = -74.306508 kcal Electronic energy + Delta-G solvation = -28583.910964 eV Core-core repulsion = 24694.239127 eV Total energy + Delta-G solvation = -3889.671838 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.76716 -37.41416 -36.89706 -36.35993 -35.84749 -33.97803 -33.37853 -30.57471 -29.81370 -29.38698 -28.79352 -26.75609 -25.99241 -24.84971 -22.14517 -20.97248 -20.48295 -18.93938 -18.68559 -17.42521 -17.12643 -16.53389 -16.36312 -16.05418 -15.54346 -15.23330 -14.88873 -14.41922 -13.89583 -13.75244 -13.64520 -13.44270 -13.36952 -13.16493 -12.90637 -12.59169 -12.44028 -12.35651 -12.20017 -12.07633 -11.89654 -11.88801 -11.82120 -11.72910 -11.55703 -11.35729 -11.14597 -11.04615 -10.91142 -10.81881 -10.44408 -10.25238 -9.82985 -9.38456 -9.30105 -8.94758 -8.36421 -7.54658 -7.28570 -6.78576 -4.48191 -0.05643 2.37190 2.71334 3.00622 3.05227 3.10356 3.14839 3.31049 3.62128 3.79899 3.90028 3.93511 4.28071 4.40815 4.59403 4.66212 4.82536 4.85752 5.01143 5.10094 5.23566 5.27613 5.40820 5.43035 5.56746 5.64030 5.65396 5.71445 5.82338 6.00542 6.07531 6.17721 6.38254 6.44014 6.83885 6.96134 7.01248 7.17094 7.25502 7.61809 7.69100 7.82270 8.01246 8.09405 8.23849 8.57956 8.79989 8.88758 8.94863 10.14877 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022416 B = 0.003101 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.811037 B = 9028.613745 C = 9456.314944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.154 3.846 3 H 0.116 0.884 4 C -0.589 4.589 5 H 0.137 0.863 6 C -0.144 4.144 7 S 2.413 3.587 8 C -0.667 4.667 9 O -0.925 6.925 10 O -0.914 6.914 11 N -0.629 5.629 12 C 0.075 3.925 13 C 0.576 3.424 14 O -0.556 6.556 15 C -0.264 4.264 16 C -0.048 4.048 17 C -0.167 4.167 18 C 0.130 3.870 19 C -0.456 4.456 20 H 0.081 0.919 21 C 0.072 3.928 22 N -0.793 5.793 23 Si 0.915 3.085 24 H -0.260 1.260 25 H -0.272 1.272 26 H -0.274 1.274 27 C -0.230 4.230 28 C -0.051 4.051 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.064 0.936 39 H 0.085 0.915 40 H 0.060 0.940 41 H 0.095 0.905 42 H 0.120 0.880 43 H 0.282 0.718 44 H 0.097 0.903 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.237 -2.120 -18.566 20.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.049 3.951 3 H 0.133 0.867 4 C -0.699 4.699 5 H 0.155 0.845 6 C -0.202 4.202 7 S 2.593 3.407 8 C -0.815 4.815 9 O -0.922 6.922 10 O -0.910 6.910 11 N -0.364 5.364 12 C -0.067 4.067 13 C 0.372 3.628 14 O -0.435 6.435 15 C -0.268 4.268 16 C -0.067 4.067 17 C -0.186 4.186 18 C 0.128 3.872 19 C -0.486 4.486 20 H 0.099 0.901 21 C -0.146 4.146 22 N -0.418 5.418 23 Si 0.739 3.261 24 H -0.184 1.184 25 H -0.197 1.197 26 H -0.199 1.199 27 C -0.250 4.250 28 C -0.069 4.069 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.083 0.917 39 H 0.104 0.896 40 H 0.079 0.921 41 H 0.113 0.887 42 H 0.138 0.862 43 H 0.093 0.907 44 H 0.115 0.885 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.615 -1.113 -17.808 19.030 hybrid contribution -0.327 -0.899 0.010 0.957 sum -6.942 -2.012 -17.798 19.210 Atomic orbital electron populations 1.22108 0.93614 1.02620 1.02794 1.20594 0.95776 0.97629 0.81119 0.86665 1.30627 1.26138 1.09213 1.03878 0.84486 1.21758 1.04249 1.01044 0.93166 1.08387 0.78351 0.76529 0.77439 1.30444 1.12225 1.13917 1.24924 1.93613 1.78183 1.34236 1.86152 1.93644 1.78334 1.66820 1.52248 1.47979 1.48200 1.16102 1.24162 1.22088 0.98755 0.82451 1.03448 1.18917 0.76411 0.85795 0.81709 1.90697 1.61929 1.17002 1.73899 1.18848 1.18149 0.95170 0.94633 1.20463 0.96552 0.97590 0.92120 1.20999 1.05255 0.94455 0.97928 1.17810 0.86723 0.91236 0.91473 1.19746 1.21690 1.16926 0.90227 0.90064 1.25994 0.93817 0.94118 1.00662 1.69714 1.22188 1.26382 1.23528 0.86153 0.79975 0.79761 0.80200 1.18368 1.19709 1.19894 1.20829 1.10056 0.98548 0.95541 1.20848 0.96092 0.92559 0.97417 0.91223 0.91889 0.91425 0.90333 0.91269 0.89799 0.85579 0.85435 0.85557 0.91737 0.89633 0.92127 0.88689 0.86227 0.90726 0.88485 0.86986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.74 37.16 0.32 -1.19 16 2 C 0.15 2.05 2.21 -67.93 -0.15 1.90 16 3 H 0.12 1.81 6.91 -51.93 -0.36 1.45 16 4 C -0.59 -5.68 2.32 -26.73 -0.06 -5.74 16 5 H 0.14 0.94 7.80 -51.92 -0.41 0.53 16 6 C -0.14 -0.93 8.55 37.16 0.32 -0.61 16 7 S 2.41 31.21 4.65 -107.50 -0.50 30.71 16 8 C -0.67 -4.89 10.01 101.05 1.01 -3.88 16 9 O -0.92 -15.95 18.06 -57.83 -1.04 -17.00 16 10 O -0.91 -15.44 16.23 -57.83 -0.94 -16.38 16 11 N -0.63 -10.58 1.70 -175.13 -0.30 -10.87 16 12 C 0.08 1.06 8.09 59.85 0.48 1.55 16 13 C 0.58 12.79 6.81 -12.42 -0.08 12.71 16 14 O -0.56 -13.86 16.14 5.28 0.09 -13.77 16 15 C -0.26 -6.34 5.19 -104.73 -0.54 -6.89 16 16 C -0.05 -1.22 9.53 -39.61 -0.38 -1.60 16 17 C -0.17 -4.44 8.56 -39.27 -0.34 -4.77 16 18 C 0.13 3.46 5.51 -106.81 -0.59 2.87 16 19 C -0.46 -11.89 9.03 -37.75 -0.34 -12.23 16 20 H 0.08 2.03 7.86 -52.49 -0.41 1.62 16 21 C 0.07 1.78 5.31 -17.31 -0.09 1.69 16 22 N -0.79 -20.22 10.95 55.56 0.61 -19.61 16 23 Si 0.91 18.39 29.56 -169.99 -5.03 13.37 16 24 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 25 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 26 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 27 C -0.23 -5.60 9.73 -39.27 -0.38 -5.99 16 28 C -0.05 -1.15 7.71 -39.61 -0.31 -1.46 16 29 H 0.07 0.52 6.44 -51.93 -0.33 0.18 16 30 H 0.06 0.53 6.50 -51.92 -0.34 0.19 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.26 6.38 -51.92 -0.33 -0.07 16 34 H 0.08 0.42 6.44 -51.93 -0.33 0.09 16 35 H 0.13 0.62 6.77 -51.92 -0.35 0.27 16 36 H 0.13 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.13 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.88 6.12 -51.93 -0.32 0.56 16 39 H 0.09 1.38 6.43 -51.93 -0.33 1.05 16 40 H 0.06 0.63 6.18 -51.93 -0.32 0.31 16 41 H 0.09 2.34 7.98 -52.49 -0.42 1.92 16 42 H 0.12 3.26 6.46 -52.49 -0.34 2.92 16 43 H 0.28 6.52 8.29 -40.82 -0.34 6.18 16 44 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 45 H 0.11 2.27 4.93 -52.48 -0.26 2.01 16 LS Contribution 368.04 15.07 5.55 5.55 Total: -1.00 -35.48 368.04 -8.79 -44.28 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -6.10 Total: 7.37 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: -1.13 Total: -23.65 kcal Atomic # 7 Polarization: -30.80 SS G_CDS: 0.31 Total: -30.48 kcal Atomic # 8 Polarization: -45.25 SS G_CDS: -1.90 Total: -47.14 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.37 kcal Atomic # 16 Polarization: 31.21 SS G_CDS: -0.50 Total: 30.71 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.48 -8.79 -44.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270430200.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.029 kcal (2) G-P(sol) polarization free energy of solvation -35.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds