Wall clock time and date at job start Sat Apr 11 2020 05:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.47229 * 2 1 4 4 C 1.46504 * 119.99985 * 270.00404 * 3 2 1 5 5 C 1.50707 * 109.46816 * 269.99787 * 4 3 2 6 6 H 1.08000 * 119.99766 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99769 * 180.02562 * 5 4 3 8 8 N 1.31520 * 120.00230 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99902 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47394 * 60.00175 * 9 7 5 11 11 H 1.48501 * 109.47366 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47115 * 300.00106 * 9 7 5 13 13 C 1.34778 * 119.99892 * 90.00415 * 3 2 1 14 14 O 1.21279 * 120.00071 * 180.02562 * 13 3 2 15 15 C 1.50697 * 120.00010 * 359.97438 * 13 3 2 16 16 S 1.81401 * 109.47152 * 180.02562 * 15 13 3 17 17 O 1.42095 * 110.54027 * 68.37465 * 16 15 13 18 18 O 1.42097 * 110.53912 * 291.62203 * 16 15 13 19 19 C 1.76201 * 104.44771 * 180.02562 * 16 15 13 20 20 C 1.38256 * 120.00171 * 90.00255 * 19 16 15 21 21 C 1.38211 * 120.00062 * 180.27951 * 20 19 16 22 22 C 1.38258 * 119.99784 * 359.47854 * 21 20 19 23 23 C 1.50707 * 119.99997 * 180.23526 * 22 21 20 24 24 C 1.38212 * 120.00085 * 0.52159 * 22 21 20 25 25 C 1.50706 * 120.00275 * 179.72192 * 24 22 21 26 26 C 1.38214 * 119.99668 * 270.01888 * 19 16 15 27 27 H 1.08999 * 109.47697 * 59.99835 * 1 2 3 28 28 H 1.08998 * 109.47424 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46945 * 299.99817 * 1 2 3 30 30 H 1.09003 * 109.46945 * 240.00183 * 2 1 3 31 31 H 1.08997 * 109.47071 * 120.00576 * 2 1 3 32 32 H 1.08996 * 109.47335 * 29.99676 * 4 3 2 33 33 H 1.08996 * 109.46857 * 150.00197 * 4 3 2 34 34 H 0.96998 * 120.00020 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.47135 * 60.00160 * 15 13 3 36 36 H 1.09004 * 109.47054 * 299.99927 * 15 13 3 37 37 H 1.08002 * 119.99676 * 359.97438 * 20 19 16 38 38 H 1.07998 * 120.00348 * 179.72205 * 21 20 19 39 39 H 1.09003 * 109.47135 * 270.28406 * 23 22 21 40 40 H 1.09000 * 109.46785 * 30.28531 * 23 22 21 41 41 H 1.09002 * 109.47199 * 150.28503 * 23 22 21 42 42 H 1.09004 * 109.46442 * 270.02096 * 25 24 22 43 43 H 1.09000 * 109.46849 * 30.01503 * 25 24 22 44 44 H 1.08993 * 109.47102 * 150.01800 * 25 24 22 45 45 H 1.07997 * 120.00449 * 359.97438 * 26 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3426 1.2302 -1.0962 7 6 4.1493 2.3905 -2.8775 8 7 3.3496 3.1274 -3.6171 9 14 5.9133 2.0964 -3.4171 10 1 6.1400 0.6397 -3.5956 11 1 6.1612 2.7975 -4.7025 12 1 6.8412 2.6186 -2.3820 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1601 1.1673 15 6 1.9914 1.3062 2.4723 16 16 2.3838 2.4178 3.8511 17 8 1.4499 3.4870 3.9109 18 8 3.7823 2.6622 3.9119 19 6 2.0469 1.4643 5.2940 20 6 3.0437 0.6915 5.8603 21 6 2.7779 -0.0610 6.9887 22 6 1.5181 -0.0324 7.5576 23 6 1.2296 -0.8487 8.7911 24 6 0.5216 0.7401 6.9915 25 6 -0.8534 0.7664 7.6079 26 6 0.7860 1.4887 5.8596 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.5816 1.6878 -2.0284 33 1 2.0955 3.1410 -1.1383 34 1 3.6758 3.5185 -4.4426 35 1 2.6213 0.4185 2.5302 36 1 0.9433 1.0125 2.5299 37 1 4.0288 0.6719 5.4179 38 1 3.5553 -0.6681 7.4285 39 1 0.8803 -1.8388 8.4982 40 1 2.1392 -0.9449 9.3840 41 1 0.4606 -0.3527 9.3834 42 1 -1.4645 -0.0209 7.1664 43 1 -0.7729 0.6042 8.6828 44 1 -1.3172 1.7347 7.4203 45 1 0.0074 2.0924 5.4174 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276894295.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:38 Heat of formation + Delta-G solvation = -84.361389 kcal Electronic energy + Delta-G solvation = -27412.843316 eV Core-core repulsion = 23522.735466 eV Total energy + Delta-G solvation = -3890.107850 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.91800 -39.30452 -36.93369 -35.78547 -35.54792 -33.89785 -32.90640 -32.56987 -30.52875 -30.12868 -28.14636 -27.01135 -26.79074 -23.15980 -22.88447 -22.63068 -21.73014 -19.09397 -18.46902 -17.76263 -16.63642 -16.52353 -16.38694 -16.32410 -15.57080 -15.51371 -15.07872 -14.71812 -14.54428 -14.44560 -14.13378 -13.58216 -13.52862 -13.32749 -13.22964 -13.08663 -12.83972 -12.47174 -12.40280 -12.18736 -12.09020 -12.03312 -11.85626 -11.80956 -11.73995 -11.39051 -11.31007 -11.01585 -10.92982 -10.81986 -10.66342 -10.49085 -10.19255 -9.73075 -9.46493 -9.31609 -9.07233 -8.45325 -7.86959 -6.07073 -4.12393 0.01467 0.58241 0.99144 2.97172 3.02075 3.15029 3.32112 3.37039 3.40910 3.60773 4.08137 4.13992 4.35742 4.41889 4.43259 4.54771 4.63457 4.68349 4.90771 4.95473 5.06520 5.08509 5.09766 5.24966 5.27640 5.30762 5.33037 5.39201 5.43792 5.50183 5.64000 5.65404 5.75505 5.84350 5.90262 5.92143 6.11851 6.16367 6.37476 6.56408 6.87403 7.33692 7.39007 7.87367 8.14767 8.17556 8.64518 8.92128 9.52708 11.01249 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019053 B = 0.002845 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.217530 B = 9838.544499 C =10192.666241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.102 3.898 3 N -0.580 5.580 4 C 0.243 3.757 5 C -0.532 4.532 6 H 0.059 0.941 7 C 0.063 3.937 8 N -0.893 5.893 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.531 3.469 14 O -0.534 6.534 15 C -0.649 4.649 16 S 2.533 3.467 17 O -0.923 6.923 18 O -0.920 6.920 19 C -0.666 4.666 20 C -0.025 4.025 21 C -0.139 4.139 22 C -0.037 4.037 23 C -0.125 4.125 24 C -0.110 4.110 25 C -0.119 4.119 26 C -0.020 4.020 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.051 0.949 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.038 0.962 33 H 0.048 0.952 34 H 0.265 0.735 35 H 0.157 0.843 36 H 0.155 0.845 37 H 0.144 0.856 38 H 0.132 0.868 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.951 -12.760 22.533 27.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.023 4.023 3 N -0.311 5.311 4 C 0.124 3.876 5 C -0.571 4.571 6 H 0.077 0.923 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.315 3.685 14 O -0.413 6.413 15 C -0.779 4.779 16 S 2.708 3.292 17 O -0.920 6.920 18 O -0.917 6.917 19 C -0.751 4.751 20 C -0.043 4.043 21 C -0.158 4.158 22 C -0.037 4.037 23 C -0.182 4.182 24 C -0.111 4.111 25 C -0.175 4.175 26 C -0.039 4.039 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.175 0.825 36 H 0.173 0.827 37 H 0.161 0.839 38 H 0.150 0.850 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -8.465 -11.233 22.287 26.354 hybrid contribution 0.675 -1.221 -0.271 1.421 sum -7.790 -12.454 22.017 26.467 Atomic orbital electron populations 1.22240 0.96483 1.01698 1.02578 1.21528 0.93774 0.83818 1.03132 1.48169 1.62236 1.13399 1.07256 1.19437 0.96718 0.93920 0.77482 1.21371 0.96729 1.32438 1.06530 0.92298 1.24930 0.97996 0.94755 0.96303 1.69919 1.35815 1.33071 1.14394 0.86534 0.84643 0.78230 0.77906 1.20237 1.21124 1.19962 1.18895 0.79349 0.86347 0.83936 1.90830 1.46563 1.17316 1.86598 1.30841 1.13660 1.18659 1.14729 1.04602 0.75133 0.75019 0.74419 1.93537 1.64640 1.48169 1.85699 1.93553 1.30103 1.82493 1.85578 1.30892 1.01773 1.18939 1.23545 1.20991 0.97995 0.91037 0.94315 1.21163 0.96737 1.00840 0.97016 1.20100 0.93193 0.94766 0.95661 1.20996 1.03010 0.99468 0.94692 1.19887 0.96464 0.98245 0.96531 1.20893 0.92633 1.03138 1.00867 1.20877 0.94684 0.94435 0.93880 0.91685 0.91867 0.93028 0.89369 0.91469 0.94434 0.93360 0.92543 0.82476 0.82730 0.83876 0.85002 0.90377 0.91050 0.90609 0.90794 0.90947 0.91026 0.83972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 10.24 37.16 0.38 -1.75 16 2 C 0.10 1.53 5.93 -4.04 -0.02 1.50 16 3 N -0.58 -12.04 2.46 -175.06 -0.43 -12.47 16 4 C 0.24 6.28 5.16 -5.19 -0.03 6.26 16 5 C -0.53 -15.02 9.39 -34.44 -0.32 -15.34 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 8 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 9 Si 0.90 21.93 29.54 -169.99 -5.02 16.90 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.53 11.08 7.69 -10.99 -0.08 10.99 16 14 O -0.53 -13.77 15.44 5.56 0.09 -13.69 16 15 C -0.65 -9.10 5.02 36.00 0.18 -8.92 16 16 S 2.53 40.32 4.29 -107.50 -0.46 39.86 16 17 O -0.92 -17.22 17.13 -57.55 -0.99 -18.21 16 18 O -0.92 -17.72 17.12 -57.55 -0.99 -18.71 16 19 C -0.67 -8.15 5.66 -39.58 -0.22 -8.37 16 20 C -0.02 -0.27 9.47 -39.58 -0.37 -0.64 16 21 C -0.14 -1.25 9.70 -39.58 -0.38 -1.63 16 22 C -0.04 -0.31 5.88 -104.62 -0.62 -0.93 16 23 C -0.13 -0.65 9.60 36.01 0.35 -0.31 16 24 C -0.11 -1.00 5.88 -104.62 -0.62 -1.62 16 25 C -0.12 -0.74 9.60 36.01 0.35 -0.39 16 26 C -0.02 -0.22 9.13 -39.58 -0.36 -0.58 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.59 7.22 -51.93 -0.37 0.21 16 30 H 0.09 1.37 8.07 -51.93 -0.42 0.95 16 31 H 0.07 0.79 6.44 -51.93 -0.33 0.46 16 32 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 33 H 0.05 1.41 7.42 -51.93 -0.39 1.02 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.16 1.64 7.40 -51.92 -0.38 1.25 16 36 H 0.15 1.55 7.18 -51.92 -0.37 1.18 16 37 H 0.14 1.43 7.57 -52.49 -0.40 1.03 16 38 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 39 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 41 H 0.08 0.33 5.95 -51.93 -0.31 0.02 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.07 0.35 5.95 -51.93 -0.31 0.04 16 44 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 45 H 0.14 1.40 7.57 -52.49 -0.40 1.00 16 LS Contribution 386.17 15.07 5.82 5.82 Total: -1.00 -38.55 386.17 -9.72 -48.28 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -6.60 Total: -2.02 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: -1.88 Total: -20.03 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.31 Total: -38.21 kcal Atomic # 8 Polarization: -48.72 SS G_CDS: -1.89 Total: -50.60 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 40.32 SS G_CDS: -0.46 Total: 39.86 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -38.55 -9.72 -48.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276894295.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.086 kcal (2) G-P(sol) polarization free energy of solvation -38.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds