Wall clock time and date at job start Sat Apr 11 2020 05:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.47229 * 2 1 4 4 C 1.46504 * 119.99985 * 270.00404 * 3 2 1 5 5 C 1.50707 * 109.46816 * 269.99787 * 4 3 2 6 6 H 1.08000 * 119.99766 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99769 * 180.02562 * 5 4 3 8 8 N 1.31520 * 120.00230 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99902 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47394 * 60.00175 * 9 7 5 11 11 H 1.48501 * 109.47366 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47115 * 300.00106 * 9 7 5 13 13 C 1.34778 * 119.99892 * 90.00415 * 3 2 1 14 14 O 1.21279 * 120.00071 * 180.02562 * 13 3 2 15 15 C 1.50697 * 120.00010 * 359.97438 * 13 3 2 16 16 S 1.81401 * 109.47152 * 180.02562 * 15 13 3 17 17 O 1.42095 * 110.54027 * 68.37465 * 16 15 13 18 18 O 1.42097 * 110.53912 * 291.62203 * 16 15 13 19 19 C 1.76201 * 104.44771 * 180.02562 * 16 15 13 20 20 C 1.38256 * 120.00171 * 90.00255 * 19 16 15 21 21 C 1.38211 * 120.00062 * 180.27951 * 20 19 16 22 22 C 1.38258 * 119.99784 * 359.47854 * 21 20 19 23 23 C 1.50707 * 119.99997 * 180.23526 * 22 21 20 24 24 C 1.38212 * 120.00085 * 0.52159 * 22 21 20 25 25 C 1.50706 * 120.00275 * 179.72192 * 24 22 21 26 26 C 1.38214 * 119.99668 * 270.01888 * 19 16 15 27 27 H 1.08999 * 109.47697 * 59.99835 * 1 2 3 28 28 H 1.08998 * 109.47424 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46945 * 299.99817 * 1 2 3 30 30 H 1.09003 * 109.46945 * 240.00183 * 2 1 3 31 31 H 1.08997 * 109.47071 * 120.00576 * 2 1 3 32 32 H 1.08996 * 109.47335 * 29.99676 * 4 3 2 33 33 H 1.08996 * 109.46857 * 150.00197 * 4 3 2 34 34 H 0.96998 * 120.00020 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.47135 * 60.00160 * 15 13 3 36 36 H 1.09004 * 109.47054 * 299.99927 * 15 13 3 37 37 H 1.08002 * 119.99676 * 359.97438 * 20 19 16 38 38 H 1.07998 * 120.00348 * 179.72205 * 21 20 19 39 39 H 1.09003 * 109.47135 * 270.28406 * 23 22 21 40 40 H 1.09000 * 109.46785 * 30.28531 * 23 22 21 41 41 H 1.09002 * 109.47199 * 150.28503 * 23 22 21 42 42 H 1.09004 * 109.46442 * 270.02096 * 25 24 22 43 43 H 1.09000 * 109.46849 * 30.01503 * 25 24 22 44 44 H 1.08993 * 109.47102 * 150.01800 * 25 24 22 45 45 H 1.07997 * 120.00449 * 359.97438 * 26 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3426 1.2302 -1.0962 7 6 4.1493 2.3905 -2.8775 8 7 3.3496 3.1274 -3.6171 9 14 5.9133 2.0964 -3.4171 10 1 6.1400 0.6397 -3.5956 11 1 6.1612 2.7975 -4.7025 12 1 6.8412 2.6186 -2.3820 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1601 1.1673 15 6 1.9914 1.3062 2.4723 16 16 2.3838 2.4178 3.8511 17 8 1.4499 3.4870 3.9109 18 8 3.7823 2.6622 3.9119 19 6 2.0469 1.4643 5.2940 20 6 3.0437 0.6915 5.8603 21 6 2.7779 -0.0610 6.9887 22 6 1.5181 -0.0324 7.5576 23 6 1.2296 -0.8487 8.7911 24 6 0.5216 0.7401 6.9915 25 6 -0.8534 0.7664 7.6079 26 6 0.7860 1.4887 5.8596 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.5816 1.6878 -2.0284 33 1 2.0955 3.1410 -1.1383 34 1 3.6758 3.5185 -4.4426 35 1 2.6213 0.4185 2.5302 36 1 0.9433 1.0125 2.5299 37 1 4.0288 0.6719 5.4179 38 1 3.5553 -0.6681 7.4285 39 1 0.8803 -1.8388 8.4982 40 1 2.1392 -0.9449 9.3840 41 1 0.4606 -0.3527 9.3834 42 1 -1.4645 -0.0209 7.1664 43 1 -0.7729 0.6042 8.6828 44 1 -1.3172 1.7347 7.4203 45 1 0.0074 2.0924 5.4174 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276894295.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:38 Heat of formation + Delta-G solvation = -111.915977 kcal Electronic energy + Delta-G solvation = -27414.038173 eV Core-core repulsion = 23522.735466 eV Total energy + Delta-G solvation = -3891.302707 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.97649 -40.60744 -38.26604 -37.28799 -37.02641 -34.99178 -34.56556 -33.20812 -32.09974 -31.41807 -28.82772 -28.65454 -27.57065 -25.03488 -24.26531 -23.32911 -22.53062 -20.52231 -19.76649 -18.94211 -18.62068 -17.91297 -17.75717 -17.44624 -16.82810 -16.68558 -16.29018 -16.07354 -15.83495 -15.23966 -15.17870 -14.88262 -14.68295 -14.49028 -14.21550 -13.81438 -13.62456 -13.60108 -13.58930 -13.31787 -13.22834 -13.15386 -13.13293 -13.10116 -13.04488 -12.67953 -12.61690 -12.58589 -12.19452 -12.16089 -12.02582 -11.92010 -11.77870 -11.54319 -11.12062 -10.66189 -10.07820 -9.76919 -9.63324 -8.25680 -6.40363 -1.16277 -0.23090 0.27200 1.34915 1.40692 1.43808 1.49212 1.81601 2.08758 2.36384 2.44245 2.87616 3.03640 3.04827 3.28674 3.66714 3.83274 3.86272 3.91357 4.00729 4.21528 4.23004 4.24524 4.38079 4.48872 4.59775 4.68555 4.74390 4.79147 4.85291 4.92090 4.93796 4.93984 5.01480 5.08462 5.15853 5.16643 5.20459 5.34639 5.37819 5.49697 5.54536 5.73763 5.90067 6.00243 6.46095 6.68157 7.04812 7.30894 8.81973 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019053 B = 0.002845 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.217530 B = 9838.544499 C =10192.666241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.089 3.911 3 N -0.584 5.584 4 C 0.256 3.744 5 C -0.549 4.549 6 H 0.057 0.943 7 C 0.008 3.992 8 N -0.927 5.927 9 Si 0.967 3.033 10 H -0.256 1.256 11 H -0.278 1.278 12 H -0.280 1.280 13 C 0.515 3.485 14 O -0.599 6.599 15 C -0.629 4.629 16 S 2.523 3.477 17 O -0.968 6.968 18 O -0.970 6.970 19 C -0.662 4.662 20 C -0.041 4.041 21 C -0.139 4.139 22 C -0.033 4.033 23 C -0.125 4.125 24 C -0.113 4.113 25 C -0.120 4.120 26 C -0.037 4.037 27 H 0.040 0.960 28 H 0.102 0.898 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.111 0.889 32 H 0.033 0.967 33 H 0.000 1.000 34 H 0.268 0.732 35 H 0.201 0.799 36 H 0.202 0.798 37 H 0.145 0.855 38 H 0.160 0.840 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.069 0.931 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.538 -16.776 25.141 31.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.032 4.032 3 N -0.313 5.313 4 C 0.135 3.865 5 C -0.587 4.587 6 H 0.075 0.925 7 C -0.191 4.191 8 N -0.567 5.567 9 Si 0.791 3.209 10 H -0.180 1.180 11 H -0.203 1.203 12 H -0.205 1.205 13 C 0.302 3.698 14 O -0.482 6.482 15 C -0.759 4.759 16 S 2.707 3.293 17 O -0.965 6.965 18 O -0.967 6.967 19 C -0.752 4.752 20 C -0.060 4.060 21 C -0.157 4.157 22 C -0.033 4.033 23 C -0.181 4.181 24 C -0.114 4.114 25 C -0.176 4.176 26 C -0.056 4.056 27 H 0.059 0.941 28 H 0.120 0.880 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.129 0.871 32 H 0.051 0.949 33 H 0.018 0.982 34 H 0.077 0.923 35 H 0.219 0.781 36 H 0.219 0.781 37 H 0.163 0.837 38 H 0.177 0.823 39 H 0.112 0.888 40 H 0.101 0.899 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.088 0.912 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -9.067 -15.265 24.872 30.559 hybrid contribution 0.769 -0.059 -0.969 1.238 sum -8.298 -15.323 23.903 29.581 Atomic orbital electron populations 1.22219 0.94185 1.04049 1.02069 1.21985 0.95716 0.80569 1.04965 1.48186 1.62085 1.15458 1.05621 1.18888 0.95847 0.91825 0.79959 1.21690 0.97781 1.32494 1.06759 0.92458 1.25866 1.02479 0.94359 0.96406 1.70040 1.37867 1.33893 1.14851 0.85481 0.78864 0.79251 0.77338 1.18020 1.20262 1.20536 1.19883 0.78066 0.85956 0.85941 1.90799 1.49183 1.20381 1.87847 1.30701 1.17547 1.18513 1.09154 1.04206 0.73728 0.75690 0.75718 1.93476 1.65015 1.51311 1.86676 1.93486 1.32521 1.84042 1.86653 1.30074 1.03147 1.20029 1.21980 1.21179 0.97826 0.91553 0.95452 1.21512 0.97880 1.00293 0.96043 1.20566 0.92558 0.93999 0.96209 1.21104 1.04099 0.99654 0.93273 1.20241 0.98115 0.97385 0.95679 1.20992 0.91059 1.03715 1.01877 1.21067 0.94235 0.95258 0.95008 0.94121 0.87968 0.91743 0.90145 0.87069 0.94886 0.98215 0.92297 0.78139 0.78110 0.83702 0.82264 0.88777 0.89912 0.89437 0.89269 0.89161 0.91157 0.83754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.71 10.24 71.98 0.74 -2.97 16 2 C 0.09 2.50 5.93 86.38 0.51 3.01 16 3 N -0.58 -24.59 2.46 -826.16 -2.03 -26.62 16 4 C 0.26 13.93 5.16 85.63 0.44 14.38 16 5 C -0.55 -31.99 9.39 25.60 0.24 -31.75 16 6 H 0.06 3.27 7.81 -2.91 -0.02 3.25 16 7 C 0.01 0.48 5.46 84.65 0.46 0.94 16 8 N -0.93 -56.79 13.29 21.45 0.28 -56.50 16 9 Si 0.97 45.55 29.54 68.60 2.03 47.57 16 10 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 13 C 0.51 21.97 7.69 87.66 0.67 22.64 16 14 O -0.60 -32.96 15.44 -3.03 -0.05 -33.00 16 15 C -0.63 -16.74 5.02 71.23 0.36 -16.39 16 16 S 2.52 82.69 4.29 -56.49 -0.24 82.45 16 17 O -0.97 -38.24 17.13 -127.64 -2.19 -40.43 16 18 O -0.97 -39.46 17.12 -127.64 -2.19 -41.65 16 19 C -0.66 -15.61 5.66 22.27 0.13 -15.49 16 20 C -0.04 -0.83 9.47 22.27 0.21 -0.62 16 21 C -0.14 -2.05 9.70 22.27 0.22 -1.83 16 22 C -0.03 -0.43 5.88 -19.86 -0.12 -0.55 16 23 C -0.13 -0.72 9.60 71.24 0.68 -0.04 16 24 C -0.11 -1.72 5.88 -19.86 -0.12 -1.84 16 25 C -0.12 -1.08 9.60 71.24 0.68 -0.40 16 26 C -0.04 -0.74 9.13 22.27 0.20 -0.54 16 27 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.06 1.26 7.22 -2.39 -0.02 1.25 16 30 H 0.08 2.39 8.07 -2.39 -0.02 2.37 16 31 H 0.11 2.14 6.44 -2.39 -0.02 2.12 16 32 H 0.03 1.79 8.07 -2.39 -0.02 1.77 16 33 H 0.00 -0.02 7.42 -2.39 -0.02 -0.04 16 34 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 35 H 0.20 3.50 7.40 -2.39 -0.02 3.48 16 36 H 0.20 3.37 7.18 -2.39 -0.02 3.35 16 37 H 0.15 2.78 7.57 -2.91 -0.02 2.76 16 38 H 0.16 1.41 8.06 -2.91 -0.02 1.38 16 39 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 40 H 0.08 0.34 8.09 -2.39 -0.02 0.32 16 41 H 0.09 0.33 5.95 -2.39 -0.01 0.32 16 42 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 43 H 0.09 0.49 5.95 -2.39 -0.01 0.48 16 44 H 0.07 0.67 8.08 -2.39 -0.02 0.65 16 45 H 0.14 2.75 7.57 -2.91 -0.02 2.73 16 Total: -1.00 -92.28 386.17 1.93 -90.35 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: 0.99 Total: 9.27 kcal Atomic # 6 Polarization: -36.76 SS G_CDS: 5.32 Total: -31.44 kcal Atomic # 7 Polarization: -81.38 SS G_CDS: -1.74 Total: -83.12 kcal Atomic # 8 Polarization: -110.66 SS G_CDS: -4.42 Total: -115.08 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.57 kcal Atomic # 16 Polarization: 82.69 SS G_CDS: -0.24 Total: 82.45 kcal Total: -92.28 1.93 -90.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276894295.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.569 kcal (2) G-P(sol) polarization free energy of solvation -92.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds