Wall clock time and date at job start Sat Apr 11 2020 05:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47124 * 2 1 4 4 C 1.50703 * 109.46704 * 119.99914 * 2 1 3 5 5 H 1.07998 * 120.00161 * 120.00088 * 4 2 1 6 6 C 1.37875 * 119.99728 * 299.99767 * 4 2 1 7 7 N 1.31512 * 120.00352 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99645 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47673 * 59.99817 * 8 6 4 10 10 H 1.48507 * 109.46949 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.46885 * 299.99576 * 8 6 4 12 12 N 1.46500 * 109.46742 * 239.99576 * 2 1 3 13 13 C 1.34775 * 119.99649 * 85.00955 * 12 2 1 14 14 O 1.21280 * 120.00274 * 354.98300 * 13 12 2 15 15 C 1.50707 * 119.99837 * 174.99407 * 13 12 2 16 16 H 1.09000 * 109.46873 * 334.85107 * 15 13 12 17 17 C 1.53000 * 109.46956 * 214.85265 * 15 13 12 18 18 C 1.53004 * 109.47028 * 65.69787 * 17 15 13 19 19 S 1.81400 * 109.47036 * 174.97323 * 18 17 15 20 20 C 1.81399 * 101.92061 * 180.02562 * 19 18 17 21 21 O 1.42099 * 108.57916 * 294.49034 * 19 18 17 22 22 O 1.42104 * 108.57527 * 65.51373 * 19 18 17 23 23 C 1.50696 * 109.47269 * 94.85094 * 15 13 12 24 24 C 1.38233 * 119.99825 * 59.72957 * 23 15 13 25 25 C 1.38244 * 119.99782 * 179.78664 * 24 23 15 26 26 C 1.38232 * 119.99723 * 0.44062 * 25 24 23 27 27 C 1.38241 * 120.00505 * 359.81139 * 26 25 24 28 28 C 1.38236 * 119.99897 * 240.00092 * 23 15 13 29 29 H 1.09001 * 109.47340 * 300.00445 * 1 2 3 30 30 H 1.08994 * 109.47124 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47203 * 59.99992 * 1 2 3 32 32 H 0.97004 * 120.00378 * 180.02562 * 7 6 4 33 33 H 0.97001 * 120.00036 * 264.99598 * 12 2 1 34 34 H 1.08994 * 109.47186 * 185.69578 * 17 15 13 35 35 H 1.09002 * 109.47220 * 305.69820 * 17 15 13 36 36 H 1.08994 * 109.47385 * 294.97375 * 18 17 15 37 37 H 1.09005 * 109.47076 * 54.97632 * 18 17 15 38 38 H 1.08995 * 109.46900 * 60.00141 * 20 19 18 39 39 H 1.09000 * 109.46984 * 180.02562 * 20 19 18 40 40 H 1.08998 * 109.47382 * 299.99917 * 20 19 18 41 41 H 1.08001 * 120.00153 * 359.97438 * 24 23 15 42 42 H 1.07997 * 120.00050 * 180.27501 * 25 24 23 43 43 H 1.08001 * 120.00100 * 179.83182 * 26 25 24 44 44 H 1.07996 * 120.00297 * 180.02562 * 27 26 25 45 45 H 1.07999 * 120.00210 * 359.97438 * 28 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6991 -0.2393 2.4827 7 7 0.9427 0.8298 2.6033 8 14 2.3223 -1.1195 4.0080 9 1 3.8073 -1.1191 4.0079 10 1 1.8266 -0.4197 5.2205 11 1 1.8277 -2.5196 4.0082 12 7 2.0183 -0.6907 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.7739 1.1329 -2.4357 15 6 2.7547 -0.6972 -3.5576 16 1 3.4111 -1.5019 -3.2264 17 6 3.5630 0.3209 -4.3644 18 6 4.7599 0.7931 -3.5364 19 16 5.7995 1.8853 -4.5449 20 6 7.1277 2.3135 -3.3859 21 8 6.3555 1.1254 -5.6091 22 8 5.0621 3.0626 -4.8443 23 6 1.6586 -1.2663 -4.4212 24 6 0.6959 -0.4307 -4.9559 25 6 -0.3070 -0.9521 -5.7517 26 6 -0.3524 -2.3103 -6.0052 27 6 0.6074 -3.1466 -5.4662 28 6 1.6127 -2.6245 -4.6740 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 0.7086 1.1615 3.4843 33 1 2.2490 -1.6319 -1.1525 34 1 3.9182 -0.1439 -5.2840 35 1 2.9311 1.1746 -4.6093 36 1 4.4044 1.3364 -2.6610 37 1 5.3434 -0.0701 -3.2162 38 1 7.6414 1.4055 -3.0704 39 1 7.8365 2.9808 -3.8761 40 1 6.7029 2.8120 -2.5146 41 1 0.7291 0.6298 -4.7544 42 1 -1.0566 -0.2988 -6.1731 43 1 -1.1375 -2.7180 -6.6247 44 1 0.5722 -4.2076 -5.6647 45 1 2.3626 -3.2778 -4.2530 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278944272.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:42 Heat of formation + Delta-G solvation = -94.789562 kcal Electronic energy + Delta-G solvation = -27649.643232 eV Core-core repulsion = 23759.083183 eV Total energy + Delta-G solvation = -3890.560050 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.06080 -38.41982 -37.03325 -36.10562 -35.33459 -34.43493 -32.44810 -31.43000 -30.84488 -29.76056 -29.11200 -26.99600 -25.29760 -23.20720 -22.52818 -22.03135 -20.43408 -19.33944 -18.94685 -17.42746 -17.11932 -16.53805 -16.21917 -16.08314 -15.87839 -15.35676 -15.07673 -14.65723 -14.47224 -14.25789 -13.97175 -13.50727 -13.36897 -13.33080 -13.30024 -12.76447 -12.65789 -12.40895 -12.33888 -12.14492 -12.08463 -12.02731 -11.69753 -11.27343 -11.20548 -11.12321 -11.11604 -10.99691 -10.91657 -10.71447 -10.46974 -10.35421 -10.27834 -9.27204 -9.11193 -8.87379 -8.63276 -8.52456 -7.97555 -6.17646 -4.27700 -0.11729 1.33603 1.44819 2.63718 3.20168 3.25191 3.26570 3.28018 3.49807 3.77443 3.91908 4.03322 4.31583 4.42689 4.61865 4.63414 4.82490 4.88338 4.95499 4.98315 5.06642 5.14385 5.18395 5.28888 5.47159 5.49698 5.53867 5.57337 5.61546 5.84169 5.98033 6.01048 6.10257 6.47128 6.55539 6.63948 6.79406 6.95201 7.02391 7.11733 7.39923 7.50349 7.63710 7.85859 8.10227 8.59874 8.71186 9.04398 9.40120 10.87993 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.007657 B = 0.004230 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3656.100119 B = 6618.451035 C = 9294.776973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.266 3.734 3 H 0.047 0.953 4 C -0.536 4.536 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.901 3.099 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.706 5.706 13 C 0.510 3.490 14 O -0.548 6.548 15 C -0.063 4.063 16 H 0.096 0.904 17 C -0.088 4.088 18 C -0.612 4.612 19 S 2.422 3.578 20 C -0.658 4.658 21 O -0.945 6.945 22 O -0.936 6.936 23 C -0.075 4.075 24 C -0.101 4.101 25 C -0.120 4.120 26 C -0.122 4.122 27 C -0.123 4.123 28 C -0.111 4.111 29 H 0.089 0.911 30 H 0.025 0.975 31 H 0.016 0.984 32 H 0.265 0.735 33 H 0.388 0.612 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.141 0.859 37 H 0.133 0.867 38 H 0.128 0.872 39 H 0.127 0.873 40 H 0.131 0.869 41 H 0.131 0.869 42 H 0.122 0.878 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.879 -4.838 -14.235 16.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.164 3.836 3 H 0.065 0.935 4 C -0.574 4.574 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.353 5.353 13 C 0.294 3.706 14 O -0.426 6.426 15 C -0.086 4.086 16 H 0.115 0.885 17 C -0.127 4.127 18 C -0.741 4.741 19 S 2.604 3.396 20 C -0.807 4.807 21 O -0.942 6.942 22 O -0.933 6.933 23 C -0.075 4.075 24 C -0.119 4.119 25 C -0.138 4.138 26 C -0.140 4.140 27 C -0.141 4.141 28 C -0.129 4.129 29 H 0.108 0.892 30 H 0.044 0.956 31 H 0.035 0.965 32 H 0.075 0.925 33 H 0.221 0.779 34 H 0.103 0.897 35 H 0.115 0.885 36 H 0.159 0.841 37 H 0.151 0.849 38 H 0.146 0.854 39 H 0.145 0.855 40 H 0.150 0.850 41 H 0.149 0.851 42 H 0.140 0.860 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.440 -3.578 -14.960 16.676 hybrid contribution 0.524 -1.266 1.976 2.404 sum 6.963 -4.844 -12.985 15.510 Atomic orbital electron populations 1.22060 0.98462 0.99077 1.00915 1.18740 0.91164 0.93727 0.79930 0.93496 1.21167 1.32658 1.13265 0.90333 0.92181 1.24882 0.94774 0.94935 0.99033 1.69891 1.35627 1.22378 1.24043 0.86520 0.79091 0.79652 0.81880 1.20215 1.21099 1.20159 1.46569 1.64811 1.13401 1.10473 1.20130 0.79523 0.86984 0.84013 1.90660 1.50415 1.17744 1.83823 1.20330 0.95543 0.98603 0.94081 0.88539 1.21177 0.94241 1.00246 0.97010 1.30364 1.12127 1.16389 1.15261 1.07764 0.77597 0.76628 0.77579 1.30274 1.19592 1.12374 1.18453 1.93580 1.78352 1.72194 1.50098 1.93613 1.70468 1.46533 1.82703 1.19446 0.96232 0.93652 0.98190 1.21239 0.93830 1.00759 0.96101 1.21157 0.98482 0.95399 0.98721 1.21151 0.98869 0.93809 1.00181 1.21077 0.95171 0.99612 0.98219 1.21049 0.98903 0.94192 0.98731 0.89248 0.95596 0.96520 0.92470 0.77940 0.89679 0.88546 0.84083 0.84858 0.85358 0.85456 0.85033 0.85079 0.86038 0.86296 0.86121 0.85892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.26 37.16 0.34 -3.28 16 2 C 0.27 6.52 2.52 -69.08 -0.17 6.35 16 3 H 0.05 1.32 7.65 -51.93 -0.40 0.92 16 4 C -0.54 -13.67 8.73 -34.44 -0.30 -13.97 16 5 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.29 11.32 55.43 0.63 -23.66 16 8 Si 0.90 20.04 29.54 -169.99 -5.02 15.02 16 9 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 10 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 12 N -0.71 -13.90 5.07 -54.93 -0.28 -14.18 16 13 C 0.51 9.39 5.58 -10.98 -0.06 9.32 16 14 O -0.55 -12.04 15.12 5.56 0.08 -11.95 16 15 C -0.06 -0.86 2.35 -92.92 -0.22 -1.08 16 16 H 0.10 1.06 7.87 -51.93 -0.41 0.65 16 17 C -0.09 -1.12 4.19 -26.73 -0.11 -1.23 16 18 C -0.61 -6.47 5.54 37.16 0.21 -6.26 16 19 S 2.42 24.89 5.36 -107.50 -0.58 24.31 16 20 C -0.66 -4.56 10.62 101.05 1.07 -3.49 16 21 O -0.95 -12.17 18.10 -57.83 -1.05 -13.21 16 22 O -0.94 -13.66 18.10 -57.83 -1.05 -14.70 16 23 C -0.07 -1.01 4.77 -104.63 -0.50 -1.51 16 24 C -0.10 -1.45 8.86 -39.58 -0.35 -1.80 16 25 C -0.12 -1.48 10.05 -39.58 -0.40 -1.88 16 26 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 27 C -0.12 -1.34 10.05 -39.58 -0.40 -1.73 16 28 C -0.11 -1.30 9.67 -39.58 -0.38 -1.68 16 29 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 30 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.02 0.39 8.10 -51.93 -0.42 -0.03 16 32 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 33 H 0.39 6.66 8.54 -40.82 -0.35 6.31 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.10 1.36 7.12 -51.93 -0.37 0.99 16 36 H 0.14 1.67 7.43 -51.93 -0.39 1.29 16 37 H 0.13 0.98 8.14 -51.92 -0.42 0.55 16 38 H 0.13 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.13 0.76 8.14 -51.92 -0.42 0.34 16 40 H 0.13 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.13 2.01 7.16 -52.49 -0.38 1.64 16 42 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 43 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 44 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 45 H 0.12 1.16 7.95 -52.49 -0.42 0.75 16 LS Contribution 388.43 15.07 5.85 5.85 Total: -1.00 -35.68 388.43 -9.95 -45.63 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -6.78 Total: 9.22 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: -1.76 Total: -22.33 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: 0.35 Total: -37.84 kcal Atomic # 8 Polarization: -37.86 SS G_CDS: -2.01 Total: -39.87 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Atomic # 16 Polarization: 24.89 SS G_CDS: -0.58 Total: 24.31 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.68 -9.95 -45.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278944272.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.163 kcal (2) G-P(sol) polarization free energy of solvation -35.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds