Wall clock time and date at job start Sat Apr 11 2020 05:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47124 * 2 1 4 4 C 1.50703 * 109.46704 * 119.99914 * 2 1 3 5 5 H 1.07998 * 120.00161 * 120.00088 * 4 2 1 6 6 C 1.37875 * 119.99728 * 299.99767 * 4 2 1 7 7 N 1.31512 * 120.00352 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99645 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47673 * 59.99817 * 8 6 4 10 10 H 1.48507 * 109.46949 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.46885 * 299.99576 * 8 6 4 12 12 N 1.46500 * 109.46742 * 239.99576 * 2 1 3 13 13 C 1.34775 * 119.99649 * 85.00955 * 12 2 1 14 14 O 1.21280 * 120.00274 * 354.98300 * 13 12 2 15 15 C 1.50707 * 119.99837 * 174.99407 * 13 12 2 16 16 H 1.09000 * 109.46873 * 334.85107 * 15 13 12 17 17 C 1.53000 * 109.46956 * 214.85265 * 15 13 12 18 18 C 1.53004 * 109.47028 * 65.69787 * 17 15 13 19 19 S 1.81400 * 109.47036 * 174.97323 * 18 17 15 20 20 C 1.81399 * 101.92061 * 180.02562 * 19 18 17 21 21 O 1.42099 * 108.57916 * 294.49034 * 19 18 17 22 22 O 1.42104 * 108.57527 * 65.51373 * 19 18 17 23 23 C 1.50696 * 109.47269 * 94.85094 * 15 13 12 24 24 C 1.38233 * 119.99825 * 59.72957 * 23 15 13 25 25 C 1.38244 * 119.99782 * 179.78664 * 24 23 15 26 26 C 1.38232 * 119.99723 * 0.44062 * 25 24 23 27 27 C 1.38241 * 120.00505 * 359.81139 * 26 25 24 28 28 C 1.38236 * 119.99897 * 240.00092 * 23 15 13 29 29 H 1.09001 * 109.47340 * 300.00445 * 1 2 3 30 30 H 1.08994 * 109.47124 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47203 * 59.99992 * 1 2 3 32 32 H 0.97004 * 120.00378 * 180.02562 * 7 6 4 33 33 H 0.97001 * 120.00036 * 264.99598 * 12 2 1 34 34 H 1.08994 * 109.47186 * 185.69578 * 17 15 13 35 35 H 1.09002 * 109.47220 * 305.69820 * 17 15 13 36 36 H 1.08994 * 109.47385 * 294.97375 * 18 17 15 37 37 H 1.09005 * 109.47076 * 54.97632 * 18 17 15 38 38 H 1.08995 * 109.46900 * 60.00141 * 20 19 18 39 39 H 1.09000 * 109.46984 * 180.02562 * 20 19 18 40 40 H 1.08998 * 109.47382 * 299.99917 * 20 19 18 41 41 H 1.08001 * 120.00153 * 359.97438 * 24 23 15 42 42 H 1.07997 * 120.00050 * 180.27501 * 25 24 23 43 43 H 1.08001 * 120.00100 * 179.83182 * 26 25 24 44 44 H 1.07996 * 120.00297 * 180.02562 * 27 26 25 45 45 H 1.07999 * 120.00210 * 359.97438 * 28 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6991 -0.2393 2.4827 7 7 0.9427 0.8298 2.6033 8 14 2.3223 -1.1195 4.0080 9 1 3.8073 -1.1191 4.0079 10 1 1.8266 -0.4197 5.2205 11 1 1.8277 -2.5196 4.0082 12 7 2.0183 -0.6907 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.7739 1.1329 -2.4357 15 6 2.7547 -0.6972 -3.5576 16 1 3.4111 -1.5019 -3.2264 17 6 3.5630 0.3209 -4.3644 18 6 4.7599 0.7931 -3.5364 19 16 5.7995 1.8853 -4.5449 20 6 7.1277 2.3135 -3.3859 21 8 6.3555 1.1254 -5.6091 22 8 5.0621 3.0626 -4.8443 23 6 1.6586 -1.2663 -4.4212 24 6 0.6959 -0.4307 -4.9559 25 6 -0.3070 -0.9521 -5.7517 26 6 -0.3524 -2.3103 -6.0052 27 6 0.6074 -3.1466 -5.4662 28 6 1.6127 -2.6245 -4.6740 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 0.7086 1.1615 3.4843 33 1 2.2490 -1.6319 -1.1525 34 1 3.9182 -0.1439 -5.2840 35 1 2.9311 1.1746 -4.6093 36 1 4.4044 1.3364 -2.6610 37 1 5.3434 -0.0701 -3.2162 38 1 7.6414 1.4055 -3.0704 39 1 7.8365 2.9808 -3.8761 40 1 6.7029 2.8120 -2.5146 41 1 0.7291 0.6298 -4.7544 42 1 -1.0566 -0.2988 -6.1731 43 1 -1.1375 -2.7180 -6.6247 44 1 0.5722 -4.2076 -5.6647 45 1 2.3626 -3.2778 -4.2530 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278944272.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:41 Heat of formation + Delta-G solvation = -120.423433 kcal Electronic energy + Delta-G solvation = -27650.754800 eV Core-core repulsion = 23759.083183 eV Total energy + Delta-G solvation = -3891.671618 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.31374 -39.63084 -37.98844 -37.08326 -36.89343 -35.79682 -34.29542 -32.39512 -31.75910 -30.91229 -30.38361 -28.08547 -27.32722 -24.39366 -23.60721 -23.10931 -22.01777 -20.84938 -19.81271 -18.92206 -18.08301 -17.74286 -17.41207 -17.10871 -16.97916 -16.91128 -16.21181 -15.98522 -15.66954 -15.53072 -15.24767 -14.64856 -14.43761 -14.24698 -14.07365 -13.96524 -13.91652 -13.75552 -13.56198 -13.31937 -13.12649 -13.06444 -13.02347 -12.90272 -12.81446 -12.69216 -12.27462 -12.22284 -12.15629 -12.13202 -11.95960 -11.81531 -11.34110 -11.11823 -10.73380 -10.56257 -9.80318 -9.74004 -9.59938 -8.16154 -6.33983 -0.92505 0.38749 0.51714 1.46361 1.47940 1.55854 1.81603 1.86817 2.35300 2.59981 2.68155 2.92618 3.12879 3.14441 3.48016 3.75055 3.84436 3.97320 4.02951 4.10335 4.15913 4.21456 4.27928 4.32212 4.41638 4.58519 4.65543 4.69217 4.73410 4.89704 4.92142 4.96897 5.00072 5.08702 5.11334 5.18082 5.43107 5.57461 5.62097 5.63705 5.66468 5.69716 5.91291 6.09928 6.12514 6.73988 6.98591 7.33802 7.57096 8.89754 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.007657 B = 0.004230 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3656.100119 B = 6618.451035 C = 9294.776973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.274 3.726 3 H 0.001 0.999 4 C -0.544 4.544 5 H 0.076 0.924 6 C 0.015 3.985 7 N -0.919 5.919 8 Si 0.971 3.029 9 H -0.267 1.267 10 H -0.290 1.290 11 H -0.266 1.266 12 N -0.702 5.702 13 C 0.509 3.491 14 O -0.591 6.591 15 C -0.050 4.050 16 H 0.134 0.866 17 C -0.096 4.096 18 C -0.614 4.614 19 S 2.431 3.569 20 C -0.639 4.639 21 O -0.972 6.972 22 O -0.991 6.991 23 C -0.093 4.093 24 C -0.130 4.130 25 C -0.133 4.133 26 C -0.122 4.122 27 C -0.122 4.122 28 C -0.111 4.111 29 H 0.065 0.935 30 H 0.035 0.965 31 H 0.007 0.993 32 H 0.264 0.736 33 H 0.404 0.596 34 H 0.105 0.895 35 H 0.067 0.933 36 H 0.124 0.876 37 H 0.173 0.827 38 H 0.159 0.841 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.102 0.898 42 H 0.131 0.869 43 H 0.146 0.854 44 H 0.153 0.847 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.885 -8.391 -14.118 18.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.170 3.830 3 H 0.019 0.981 4 C -0.582 4.582 5 H 0.095 0.905 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.796 3.204 9 H -0.191 1.191 10 H -0.216 1.216 11 H -0.191 1.191 12 N -0.351 5.351 13 C 0.296 3.704 14 O -0.472 6.472 15 C -0.072 4.072 16 H 0.152 0.848 17 C -0.135 4.135 18 C -0.743 4.743 19 S 2.618 3.382 20 C -0.792 4.792 21 O -0.970 6.970 22 O -0.989 6.989 23 C -0.093 4.093 24 C -0.148 4.148 25 C -0.151 4.151 26 C -0.140 4.140 27 C -0.140 4.140 28 C -0.128 4.128 29 H 0.084 0.916 30 H 0.054 0.946 31 H 0.026 0.974 32 H 0.074 0.926 33 H 0.240 0.760 34 H 0.124 0.876 35 H 0.086 0.914 36 H 0.143 0.857 37 H 0.191 0.809 38 H 0.178 0.822 39 H 0.161 0.839 40 H 0.159 0.841 41 H 0.121 0.879 42 H 0.149 0.851 43 H 0.164 0.836 44 H 0.171 0.829 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 8.431 -7.171 -14.900 18.561 hybrid contribution -0.121 -0.134 1.894 1.903 sum 8.310 -7.306 -13.006 17.076 Atomic orbital electron populations 1.21893 0.99029 0.99027 0.99241 1.18303 0.90664 0.91968 0.82047 0.98124 1.21502 1.32565 1.13563 0.90569 0.90548 1.25795 0.94864 0.95531 1.02342 1.70055 1.36994 1.24039 1.24606 0.85411 0.78838 0.78586 0.77576 1.19147 1.21554 1.19079 1.46302 1.65094 1.14067 1.09614 1.20969 0.78335 0.86420 0.84673 1.90644 1.51934 1.20028 1.84568 1.20308 0.96015 0.99241 0.91685 0.84841 1.21229 0.94667 0.99352 0.98207 1.30373 1.11870 1.17901 1.14141 1.07228 0.77816 0.75286 0.77903 1.30098 1.17604 1.14358 1.17093 1.93536 1.78642 1.72514 1.52278 1.93545 1.72540 1.48522 1.84247 1.19519 0.96205 0.94699 0.98899 1.21219 0.95708 0.99812 0.98074 1.21365 0.98324 0.96718 0.98674 1.21522 0.99552 0.93017 0.99874 1.21518 0.94236 1.01193 0.97013 1.21396 0.99703 0.93325 0.98420 0.91630 0.94596 0.97429 0.92642 0.76049 0.87617 0.91434 0.85745 0.80870 0.82248 0.83919 0.84094 0.87946 0.85139 0.83592 0.82934 0.82982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.81 9.26 71.98 0.67 -6.14 16 2 C 0.27 13.75 2.52 44.25 0.11 13.87 16 3 H 0.00 0.05 7.65 -2.39 -0.02 0.03 16 4 C -0.54 -27.52 8.73 25.60 0.22 -27.29 16 5 H 0.08 3.54 7.74 -2.91 -0.02 3.51 16 6 C 0.01 0.77 5.30 84.65 0.45 1.22 16 7 N -0.92 -51.75 11.32 21.45 0.24 -51.51 16 8 Si 0.97 40.43 29.54 68.60 2.03 42.45 16 9 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 10 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 12 N -0.70 -27.60 5.07 -446.09 -2.26 -29.86 16 13 C 0.51 19.16 5.58 87.66 0.49 19.65 16 14 O -0.59 -27.73 15.12 -3.03 -0.05 -27.78 16 15 C -0.05 -1.33 2.35 -12.29 -0.03 -1.36 16 16 H 0.13 2.49 7.87 -2.39 -0.02 2.47 16 17 C -0.10 -2.46 4.19 30.60 0.13 -2.33 16 18 C -0.61 -12.56 5.54 71.98 0.40 -12.16 16 19 S 2.43 49.41 5.36 -56.49 -0.30 49.10 16 20 C -0.64 -7.18 10.62 113.37 1.20 -5.98 16 21 O -0.97 -24.37 18.10 -127.37 -2.30 -26.68 16 22 O -0.99 -30.71 18.10 -127.37 -2.31 -33.01 16 23 C -0.09 -2.45 4.77 -19.87 -0.09 -2.54 16 24 C -0.13 -3.88 8.86 22.27 0.20 -3.68 16 25 C -0.13 -3.29 10.05 22.27 0.22 -3.07 16 26 C -0.12 -2.43 10.05 22.27 0.22 -2.20 16 27 C -0.12 -2.24 10.05 22.27 0.22 -2.01 16 28 C -0.11 -2.26 9.67 22.27 0.22 -2.05 16 29 H 0.06 3.67 6.07 -2.39 -0.01 3.65 16 30 H 0.03 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.01 0.35 8.10 -2.38 -0.02 0.33 16 32 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 33 H 0.40 13.14 8.54 -92.71 -0.79 12.34 16 34 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.07 2.11 7.12 -2.39 -0.02 2.09 16 36 H 0.12 3.03 7.43 -2.39 -0.02 3.02 16 37 H 0.17 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.16 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.14 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.14 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.10 3.54 7.16 -2.91 -0.02 3.52 16 42 H 0.13 2.81 8.06 -2.91 -0.02 2.79 16 43 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 44 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 45 H 0.15 2.16 7.95 -2.91 -0.02 2.13 16 Total: -1.00 -81.87 388.43 -0.12 -81.99 By element: Atomic # 1 Polarization: 31.17 SS G_CDS: 0.20 Total: 31.37 kcal Atomic # 6 Polarization: -40.71 SS G_CDS: 4.63 Total: -36.08 kcal Atomic # 7 Polarization: -79.35 SS G_CDS: -2.02 Total: -81.37 kcal Atomic # 8 Polarization: -82.81 SS G_CDS: -4.66 Total: -87.47 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.45 kcal Atomic # 16 Polarization: 49.41 SS G_CDS: -0.30 Total: 49.10 kcal Total: -81.87 -0.12 -81.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278944272.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.432 kcal (2) G-P(sol) polarization free energy of solvation -81.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds