Wall clock time and date at job start Sat Apr 11 2020 05:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47172 * 2 1 4 4 C 1.37103 * 119.99656 * 97.39309 * 3 2 1 5 5 H 1.07998 * 119.99562 * 160.98025 * 4 3 2 6 6 C 1.38949 * 120.00029 * 340.97065 * 4 3 2 7 7 N 1.31409 * 120.00324 * 352.41090 * 6 4 3 8 8 Si 1.86800 * 119.99556 * 172.40882 * 6 4 3 9 9 H 1.48505 * 109.47036 * 90.00330 * 8 6 4 10 10 H 1.48505 * 109.47111 * 210.00052 * 8 6 4 11 11 H 1.48500 * 109.47472 * 330.00201 * 8 6 4 12 12 C 1.34768 * 120.00113 * 277.39077 * 3 2 1 13 13 O 1.21294 * 120.00230 * 4.57001 * 12 3 2 14 14 C 1.50710 * 120.00130 * 184.56755 * 12 3 2 15 15 H 1.08998 * 109.46809 * 325.89294 * 14 12 3 16 16 C 1.53001 * 109.46817 * 85.88723 * 14 12 3 17 17 C 1.52996 * 109.46789 * 183.85470 * 16 14 12 18 18 S 1.81409 * 109.47094 * 180.02562 * 17 16 14 19 19 C 1.81399 * 101.92227 * 180.02562 * 18 17 16 20 20 O 1.42101 * 108.57549 * 294.48479 * 18 17 16 21 21 O 1.42091 * 108.58027 * 65.51084 * 18 17 16 22 22 C 1.50696 * 109.47230 * 205.88866 * 14 12 3 23 23 C 1.38234 * 119.99855 * 299.73038 * 22 14 12 24 24 C 1.38240 * 119.99863 * 179.81608 * 23 22 14 25 25 C 1.38232 * 120.00047 * 0.38708 * 24 23 22 26 26 C 1.38241 * 119.99771 * 359.85846 * 25 24 23 27 27 C 1.38234 * 120.00158 * 359.96416 * 26 25 24 28 28 H 1.08998 * 109.46835 * 300.00353 * 1 2 3 29 29 H 1.08999 * 109.47015 * 59.99800 * 1 2 3 30 30 H 1.08994 * 109.47372 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47338 * 240.00419 * 2 1 3 32 32 H 1.08999 * 109.46889 * 119.99659 * 2 1 3 33 33 H 0.96996 * 120.00213 * 179.97438 * 7 6 4 34 34 H 1.09004 * 109.46927 * 63.85335 * 16 14 12 35 35 H 1.09002 * 109.47349 * 303.85488 * 16 14 12 36 36 H 1.08996 * 109.47292 * 60.00356 * 17 16 14 37 37 H 1.08998 * 109.47566 * 299.99782 * 17 16 14 38 38 H 1.09008 * 109.47135 * 60.00032 * 19 18 17 39 39 H 1.08994 * 109.47018 * 179.97438 * 19 18 17 40 40 H 1.08995 * 109.46877 * 300.00072 * 19 18 17 41 41 H 1.08007 * 120.00291 * 359.97438 * 23 22 14 42 42 H 1.07998 * 119.99989 * 180.23265 * 24 23 22 43 43 H 1.08000 * 120.00190 * 179.84155 * 25 24 23 44 44 H 1.07995 * 119.99764 * 179.97438 * 26 25 24 45 45 H 1.07994 * 120.00020 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3909 1.9766 1.1775 5 1 3.0242 2.8512 1.1636 6 6 1.9534 1.4547 2.3887 7 7 1.0659 0.4857 2.4045 8 14 2.6271 2.1305 3.9946 9 1 1.7737 3.2553 4.4550 10 1 2.6283 1.0576 5.0214 11 1 4.0146 2.6159 3.7842 12 6 2.1014 2.0666 -1.1574 13 8 1.6948 1.5703 -2.1867 14 6 2.6995 3.4499 -1.1728 15 1 2.4571 3.9609 -0.2411 16 6 4.2192 3.3467 -1.3174 17 6 4.8352 4.7449 -1.2366 18 16 6.6369 4.6228 -1.4087 19 6 7.1438 6.3601 -1.2846 20 8 7.1523 3.9201 -0.2863 21 8 6.9361 4.1557 -2.7169 22 6 2.1361 4.2279 -2.3340 23 6 2.3232 3.7737 -3.6261 24 6 1.8031 4.4854 -4.6910 25 6 1.1028 5.6554 -4.4643 26 6 0.9200 6.1122 -3.1724 27 6 1.4370 5.3986 -2.1073 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.7608 0.1212 3.2500 34 1 4.4629 2.8973 -2.2801 35 1 4.6193 2.7266 -0.5152 36 1 4.5915 5.1942 -0.2740 37 1 4.4352 5.3651 -2.0388 38 1 6.8325 6.7614 -0.3200 39 1 8.2279 6.4295 -1.3738 40 1 6.6756 6.9332 -2.0848 41 1 2.8736 2.8615 -3.8035 42 1 1.9461 4.1286 -5.7003 43 1 0.6986 6.2127 -5.2964 44 1 0.3732 7.0265 -2.9953 45 1 1.2945 5.7557 -1.0981 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279236136.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:12 Heat of formation + Delta-G solvation = -69.813366 kcal Electronic energy + Delta-G solvation = -28533.839726 eV Core-core repulsion = 24644.362726 eV Total energy + Delta-G solvation = -3889.477000 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.71405 -38.09086 -36.94226 -36.00449 -35.25364 -34.60834 -31.52786 -30.79055 -30.48244 -29.89516 -29.70859 -26.99774 -24.79947 -22.95234 -22.31071 -22.06425 -20.36537 -19.09309 -18.84126 -17.27899 -16.85601 -16.30829 -16.06052 -16.02071 -15.79247 -14.94239 -14.71592 -14.27929 -14.15540 -14.10244 -13.82591 -13.42454 -13.35461 -13.12857 -12.89602 -12.78777 -12.35342 -12.30978 -12.04492 -11.95459 -11.94967 -11.78542 -11.58259 -11.27026 -11.18588 -11.08195 -11.00949 -10.76129 -10.72076 -10.49677 -10.37720 -10.24885 -10.14153 -9.77911 -8.91060 -8.65667 -8.41927 -8.17370 -7.72452 -6.33578 -3.99580 -0.04878 1.69634 1.78543 2.72467 3.06369 3.17738 3.20360 3.57457 3.82342 3.96917 4.02907 4.14868 4.59722 4.63628 4.65377 4.83335 4.98516 5.02043 5.19652 5.24379 5.31518 5.40372 5.44370 5.49793 5.72451 5.80628 5.89986 5.92935 6.12308 6.23354 6.29583 6.36525 6.49040 6.62500 6.77811 6.81211 6.87180 6.91631 7.07242 7.11652 7.27125 7.37327 7.47943 7.79244 7.83014 8.41459 9.02556 9.49636 9.89125 10.60187 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008380 B = 0.005360 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3340.538751 B = 5222.862859 C = 7260.842895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.139 3.861 3 N -0.436 5.436 4 C -0.333 4.333 5 H 0.098 0.902 6 C 0.035 3.965 7 N -0.864 5.864 8 Si 0.919 3.081 9 H -0.278 1.278 10 H -0.281 1.281 11 H -0.267 1.267 12 C 0.461 3.539 13 O -0.597 6.597 14 C -0.049 4.049 15 H 0.103 0.897 16 C -0.093 4.093 17 C -0.603 4.603 18 S 2.414 3.586 19 C -0.660 4.660 20 O -0.937 6.937 21 O -0.941 6.941 22 C -0.057 4.057 23 C -0.077 4.077 24 C -0.128 4.128 25 C -0.130 4.130 26 C -0.131 4.131 27 C -0.118 4.118 28 H 0.086 0.914 29 H 0.025 0.975 30 H 0.030 0.970 31 H 0.030 0.970 32 H 0.099 0.901 33 H 0.268 0.732 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.136 0.864 37 H 0.132 0.868 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.116 0.884 43 H 0.113 0.887 44 H 0.115 0.885 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.767 12.588 -5.294 14.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.016 3.984 3 N -0.154 5.154 4 C -0.461 4.461 5 H 0.116 0.884 6 C -0.169 4.169 7 N -0.502 5.502 8 Si 0.745 3.255 9 H -0.204 1.204 10 H -0.207 1.207 11 H -0.191 1.191 12 C 0.248 3.752 13 O -0.484 6.484 14 C -0.072 4.072 15 H 0.121 0.879 16 C -0.132 4.132 17 C -0.733 4.733 18 S 2.597 3.403 19 C -0.808 4.808 20 O -0.934 6.934 21 O -0.938 6.938 22 C -0.057 4.057 23 C -0.095 4.095 24 C -0.147 4.147 25 C -0.148 4.148 26 C -0.149 4.149 27 C -0.136 4.136 28 H 0.105 0.895 29 H 0.044 0.956 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.117 0.883 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.112 0.888 36 H 0.154 0.846 37 H 0.151 0.849 38 H 0.147 0.853 39 H 0.144 0.856 40 H 0.145 0.855 41 H 0.145 0.855 42 H 0.134 0.866 43 H 0.131 0.869 44 H 0.133 0.867 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 6.028 11.443 -5.722 14.143 hybrid contribution -0.396 1.139 1.127 1.650 sum 5.632 12.582 -4.595 14.531 Atomic orbital electron populations 1.22015 0.96932 0.99282 1.01603 1.21203 0.94471 0.82747 0.99963 1.43768 1.54911 1.11291 1.05418 1.19699 1.30011 1.13308 0.83079 0.88428 1.25299 0.95381 0.96672 0.99576 1.70078 1.27856 1.25664 1.26642 0.86046 0.79504 0.78609 0.81328 1.20374 1.20664 1.19117 1.19727 0.84351 0.86694 0.84438 1.90538 1.54184 1.70464 1.33180 1.20072 0.93460 0.95964 0.97675 0.87889 1.21216 0.95271 0.92214 1.04518 1.30327 1.23642 1.07359 1.11934 1.08027 0.78876 0.77946 0.75479 1.30306 1.12566 1.26468 1.11507 1.93616 1.77483 1.69317 1.52963 1.93590 1.83070 1.78165 1.38959 1.19584 0.97592 0.94269 0.94268 1.21129 0.98326 0.98286 0.91772 1.21120 0.99113 0.95546 0.98873 1.21031 1.00082 0.97061 0.96647 1.20981 1.00987 1.00116 0.92845 1.21051 0.98422 0.95227 0.98876 0.89492 0.95569 0.95099 0.95157 0.88256 0.92154 0.90025 0.88790 0.84592 0.84935 0.85350 0.85571 0.85460 0.85484 0.86574 0.86863 0.86712 0.86322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 9.60 37.16 0.36 -2.96 16 2 C 0.14 3.39 5.18 -4.04 -0.02 3.37 16 3 N -0.44 -10.66 2.64 -114.81 -0.30 -10.96 16 4 C -0.33 -7.96 8.98 -14.93 -0.13 -8.10 16 5 H 0.10 2.14 5.84 -52.49 -0.31 1.83 16 6 C 0.03 0.83 5.20 -17.47 -0.09 0.74 16 7 N -0.86 -21.30 7.99 55.50 0.44 -20.85 16 8 Si 0.92 18.66 29.56 -169.99 -5.02 13.64 16 9 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 10 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 11 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 12 C 0.46 10.70 6.65 -10.98 -0.07 10.62 16 13 O -0.60 -15.21 14.04 5.55 0.08 -15.13 16 14 C -0.05 -0.91 1.56 -92.92 -0.15 -1.05 16 15 H 0.10 1.84 6.26 -51.93 -0.33 1.52 16 16 C -0.09 -1.50 4.44 -26.73 -0.12 -1.62 16 17 C -0.60 -6.75 5.61 37.16 0.21 -6.54 16 18 S 2.41 27.18 5.36 -107.50 -0.58 26.60 16 19 C -0.66 -4.39 10.62 101.05 1.07 -3.31 16 20 O -0.94 -14.36 18.10 -57.83 -1.05 -15.40 16 21 O -0.94 -13.91 18.10 -57.83 -1.05 -14.96 16 22 C -0.06 -0.97 3.57 -104.63 -0.37 -1.34 16 23 C -0.08 -1.33 7.86 -39.58 -0.31 -1.64 16 24 C -0.13 -1.90 10.05 -39.58 -0.40 -2.30 16 25 C -0.13 -1.73 10.05 -39.58 -0.40 -2.13 16 26 C -0.13 -1.76 10.05 -39.58 -0.40 -2.15 16 27 C -0.12 -1.77 9.67 -39.58 -0.38 -2.15 16 28 H 0.09 2.19 6.14 -51.93 -0.32 1.87 16 29 H 0.03 0.63 7.86 -51.93 -0.41 0.22 16 30 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.03 0.74 7.72 -51.93 -0.40 0.33 16 32 H 0.10 2.51 5.97 -51.93 -0.31 2.20 16 33 H 0.27 6.31 8.31 -40.82 -0.34 5.97 16 34 H 0.08 1.33 7.25 -51.93 -0.38 0.95 16 35 H 0.09 1.60 7.87 -51.93 -0.41 1.20 16 36 H 0.14 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.13 1.25 7.34 -51.92 -0.38 0.87 16 38 H 0.13 0.63 8.14 -51.92 -0.42 0.20 16 39 H 0.13 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.13 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.13 2.33 6.85 -52.48 -0.36 1.97 16 42 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 43 H 0.11 1.21 8.06 -52.49 -0.42 0.78 16 44 H 0.11 1.24 8.06 -52.49 -0.42 0.81 16 45 H 0.12 1.60 7.95 -52.49 -0.42 1.18 16 LS Contribution 376.41 15.07 5.67 5.67 Total: -1.00 -33.49 376.41 -9.54 -43.03 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -6.53 Total: 8.93 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: -1.20 Total: -20.56 kcal Atomic # 7 Polarization: -31.95 SS G_CDS: 0.14 Total: -31.81 kcal Atomic # 8 Polarization: -43.48 SS G_CDS: -2.02 Total: -45.50 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.02 Total: 13.64 kcal Atomic # 16 Polarization: 27.18 SS G_CDS: -0.58 Total: 26.60 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.49 -9.54 -43.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279236136.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.788 kcal (2) G-P(sol) polarization free energy of solvation -33.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds