Wall clock time and date at job start Sat Apr 11 2020 05:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47172 * 2 1 4 4 C 1.37103 * 119.99656 * 97.39309 * 3 2 1 5 5 H 1.07998 * 119.99562 * 160.98025 * 4 3 2 6 6 C 1.38949 * 120.00029 * 340.97065 * 4 3 2 7 7 N 1.31409 * 120.00324 * 352.41090 * 6 4 3 8 8 Si 1.86800 * 119.99556 * 172.40882 * 6 4 3 9 9 H 1.48505 * 109.47036 * 90.00330 * 8 6 4 10 10 H 1.48505 * 109.47111 * 210.00052 * 8 6 4 11 11 H 1.48500 * 109.47472 * 330.00201 * 8 6 4 12 12 C 1.34768 * 120.00113 * 277.39077 * 3 2 1 13 13 O 1.21294 * 120.00230 * 4.57001 * 12 3 2 14 14 C 1.50710 * 120.00130 * 184.56755 * 12 3 2 15 15 H 1.08998 * 109.46809 * 325.89294 * 14 12 3 16 16 C 1.53001 * 109.46817 * 85.88723 * 14 12 3 17 17 C 1.52996 * 109.46789 * 183.85470 * 16 14 12 18 18 S 1.81409 * 109.47094 * 180.02562 * 17 16 14 19 19 C 1.81399 * 101.92227 * 180.02562 * 18 17 16 20 20 O 1.42101 * 108.57549 * 294.48479 * 18 17 16 21 21 O 1.42091 * 108.58027 * 65.51084 * 18 17 16 22 22 C 1.50696 * 109.47230 * 205.88866 * 14 12 3 23 23 C 1.38234 * 119.99855 * 299.73038 * 22 14 12 24 24 C 1.38240 * 119.99863 * 179.81608 * 23 22 14 25 25 C 1.38232 * 120.00047 * 0.38708 * 24 23 22 26 26 C 1.38241 * 119.99771 * 359.85846 * 25 24 23 27 27 C 1.38234 * 120.00158 * 359.96416 * 26 25 24 28 28 H 1.08998 * 109.46835 * 300.00353 * 1 2 3 29 29 H 1.08999 * 109.47015 * 59.99800 * 1 2 3 30 30 H 1.08994 * 109.47372 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47338 * 240.00419 * 2 1 3 32 32 H 1.08999 * 109.46889 * 119.99659 * 2 1 3 33 33 H 0.96996 * 120.00213 * 179.97438 * 7 6 4 34 34 H 1.09004 * 109.46927 * 63.85335 * 16 14 12 35 35 H 1.09002 * 109.47349 * 303.85488 * 16 14 12 36 36 H 1.08996 * 109.47292 * 60.00356 * 17 16 14 37 37 H 1.08998 * 109.47566 * 299.99782 * 17 16 14 38 38 H 1.09008 * 109.47135 * 60.00032 * 19 18 17 39 39 H 1.08994 * 109.47018 * 179.97438 * 19 18 17 40 40 H 1.08995 * 109.46877 * 300.00072 * 19 18 17 41 41 H 1.08007 * 120.00291 * 359.97438 * 23 22 14 42 42 H 1.07998 * 119.99989 * 180.23265 * 24 23 22 43 43 H 1.08000 * 120.00190 * 179.84155 * 25 24 23 44 44 H 1.07995 * 119.99764 * 179.97438 * 26 25 24 45 45 H 1.07994 * 120.00020 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3909 1.9766 1.1775 5 1 3.0242 2.8512 1.1636 6 6 1.9534 1.4547 2.3887 7 7 1.0659 0.4857 2.4045 8 14 2.6271 2.1305 3.9946 9 1 1.7737 3.2553 4.4550 10 1 2.6283 1.0576 5.0214 11 1 4.0146 2.6159 3.7842 12 6 2.1014 2.0666 -1.1574 13 8 1.6948 1.5703 -2.1867 14 6 2.6995 3.4499 -1.1728 15 1 2.4571 3.9609 -0.2411 16 6 4.2192 3.3467 -1.3174 17 6 4.8352 4.7449 -1.2366 18 16 6.6369 4.6228 -1.4087 19 6 7.1438 6.3601 -1.2846 20 8 7.1523 3.9201 -0.2863 21 8 6.9361 4.1557 -2.7169 22 6 2.1361 4.2279 -2.3340 23 6 2.3232 3.7737 -3.6261 24 6 1.8031 4.4854 -4.6910 25 6 1.1028 5.6554 -4.4643 26 6 0.9200 6.1122 -3.1724 27 6 1.4370 5.3986 -2.1073 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.7608 0.1212 3.2500 34 1 4.4629 2.8973 -2.2801 35 1 4.6193 2.7266 -0.5152 36 1 4.5915 5.1942 -0.2740 37 1 4.4352 5.3651 -2.0388 38 1 6.8325 6.7614 -0.3200 39 1 8.2279 6.4295 -1.3738 40 1 6.6756 6.9332 -2.0848 41 1 2.8736 2.8615 -3.8035 42 1 1.9461 4.1286 -5.7003 43 1 0.6986 6.2127 -5.2964 44 1 0.3732 7.0265 -2.9953 45 1 1.2945 5.7557 -1.0981 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279236136.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:10 Heat of formation + Delta-G solvation = -91.591900 kcal Electronic energy + Delta-G solvation = -28534.784115 eV Core-core repulsion = 24644.362726 eV Total energy + Delta-G solvation = -3890.421389 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 3.86 seconds Orbital eigenvalues (eV) -41.21386 -39.57306 -37.95973 -37.04237 -36.96543 -36.04928 -33.39431 -31.98906 -31.67072 -31.59018 -30.35579 -28.31686 -26.65563 -24.32538 -23.88646 -23.20421 -21.85642 -20.80872 -19.79609 -18.83179 -18.21752 -17.48663 -17.33942 -17.01526 -16.90078 -16.33858 -16.18384 -15.89356 -15.63789 -15.38521 -15.23085 -14.70007 -14.37222 -14.09971 -14.07727 -13.88285 -13.85549 -13.50823 -13.48098 -13.19986 -13.11865 -13.07593 -12.99727 -12.89707 -12.81782 -12.51768 -12.31089 -12.18125 -12.03303 -11.98814 -11.79076 -11.70668 -11.60405 -11.28099 -10.81190 -10.24060 -9.66344 -9.63040 -9.49480 -8.16638 -5.88703 -0.89793 0.53669 0.63516 1.44670 1.52129 1.62168 1.91604 2.02973 2.32590 2.73679 2.88235 3.14195 3.15288 3.21460 3.62586 3.77318 4.01077 4.06571 4.14631 4.20475 4.28389 4.31518 4.38568 4.40608 4.50949 4.64268 4.70126 4.74369 4.82713 4.85126 4.93096 4.96167 4.99941 5.06485 5.10447 5.22506 5.29339 5.43158 5.50061 5.67496 5.72467 5.83599 5.89876 5.92552 6.23861 6.53188 7.16846 7.64426 8.04491 8.78276 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008380 B = 0.005360 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3340.538751 B = 5222.862859 C = 7260.842895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.139 3.861 3 N -0.451 5.451 4 C -0.351 4.351 5 H 0.114 0.886 6 C -0.007 4.007 7 N -0.888 5.888 8 Si 0.985 3.015 9 H -0.270 1.270 10 H -0.286 1.286 11 H -0.260 1.260 12 C 0.447 3.553 13 O -0.629 6.629 14 C -0.039 4.039 15 H 0.109 0.891 16 C -0.096 4.096 17 C -0.597 4.597 18 S 2.410 3.590 19 C -0.627 4.627 20 O -0.988 6.988 21 O -0.989 6.989 22 C -0.076 4.076 23 C -0.103 4.103 24 C -0.137 4.137 25 C -0.124 4.124 26 C -0.124 4.124 27 C -0.123 4.123 28 H 0.073 0.927 29 H 0.009 0.991 30 H 0.049 0.951 31 H 0.019 0.981 32 H 0.090 0.910 33 H 0.268 0.732 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.167 0.833 37 H 0.154 0.846 38 H 0.158 0.842 39 H 0.140 0.860 40 H 0.156 0.844 41 H 0.097 0.903 42 H 0.131 0.869 43 H 0.148 0.852 44 H 0.150 0.850 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.775 16.936 -4.869 18.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.016 3.984 3 N -0.168 5.168 4 C -0.478 4.478 5 H 0.131 0.869 6 C -0.208 4.208 7 N -0.527 5.527 8 Si 0.808 3.192 9 H -0.195 1.195 10 H -0.212 1.212 11 H -0.184 1.184 12 C 0.237 3.763 13 O -0.517 6.517 14 C -0.061 4.061 15 H 0.127 0.873 16 C -0.135 4.135 17 C -0.727 4.727 18 S 2.598 3.402 19 C -0.781 4.781 20 O -0.985 6.985 21 O -0.986 6.986 22 C -0.077 4.077 23 C -0.121 4.121 24 C -0.155 4.155 25 C -0.142 4.142 26 C -0.142 4.142 27 C -0.140 4.140 28 H 0.092 0.908 29 H 0.028 0.972 30 H 0.068 0.932 31 H 0.037 0.963 32 H 0.108 0.892 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.185 0.815 37 H 0.172 0.828 38 H 0.176 0.824 39 H 0.159 0.841 40 H 0.175 0.825 41 H 0.115 0.885 42 H 0.149 0.851 43 H 0.165 0.835 44 H 0.168 0.832 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.025 15.747 -5.307 17.676 hybrid contribution -0.431 -0.176 0.901 1.014 sum 5.594 15.571 -4.406 17.122 Atomic orbital electron populations 1.21831 0.96282 1.00036 0.99925 1.21113 0.94958 0.83534 0.98806 1.44002 1.55293 1.11253 1.06298 1.20123 1.30543 1.14040 0.83067 0.86854 1.26123 0.95436 0.96905 1.02382 1.70178 1.28661 1.26603 1.27306 0.85040 0.79126 0.77866 0.77120 1.19511 1.21166 1.18421 1.20675 0.83661 0.88496 0.83517 1.90499 1.55331 1.71784 1.34119 1.19974 0.94512 0.92788 0.98824 0.87301 1.21113 0.94238 0.95346 1.02841 1.30266 1.23383 1.04416 1.14597 1.07758 0.78444 0.80447 0.73557 1.30019 1.13665 1.19895 1.14486 1.93551 1.78182 1.72744 1.54050 1.93529 1.83558 1.80878 1.40632 1.19539 0.99277 0.95483 0.93389 1.21042 0.99764 0.98189 0.93085 1.21356 0.99063 0.96154 0.98884 1.21437 0.98590 0.96139 0.97986 1.21399 0.99861 1.00765 0.92178 1.21283 0.97809 0.94485 1.00466 0.90789 0.97173 0.93213 0.96256 0.89193 0.92153 0.91704 0.90813 0.81487 0.82778 0.82374 0.84113 0.82530 0.88459 0.85133 0.83465 0.83203 0.84668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.00 9.60 71.98 0.69 -5.31 16 2 C 0.14 7.14 5.18 86.38 0.45 7.58 16 3 N -0.45 -22.95 2.64 -635.53 -1.68 -24.63 16 4 C -0.35 -17.04 8.98 84.04 0.75 -16.29 16 5 H 0.11 4.98 5.84 -2.91 -0.02 4.96 16 6 C -0.01 -0.34 5.20 84.93 0.44 0.10 16 7 N -0.89 -44.58 7.99 21.66 0.17 -44.41 16 8 Si 0.98 37.93 29.56 68.60 2.03 39.96 16 9 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 10 H -0.29 -11.16 7.11 99.48 0.71 -10.46 16 11 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 12 C 0.45 21.79 6.65 87.66 0.58 22.37 16 13 O -0.63 -33.99 14.04 -3.07 -0.04 -34.03 16 14 C -0.04 -1.46 1.56 -12.28 -0.02 -1.48 16 15 H 0.11 3.86 6.26 -2.39 -0.01 3.85 16 16 C -0.10 -3.23 4.44 30.59 0.14 -3.10 16 17 C -0.60 -12.59 5.61 71.98 0.40 -12.19 16 18 S 2.41 52.53 5.36 -56.49 -0.30 52.23 16 19 C -0.63 -5.50 10.62 113.37 1.20 -4.30 16 20 O -0.99 -30.73 18.10 -127.37 -2.30 -33.03 16 21 O -0.99 -30.05 18.10 -127.37 -2.30 -32.35 16 22 C -0.08 -2.60 3.57 -19.87 -0.07 -2.67 16 23 C -0.10 -3.62 7.86 22.27 0.17 -3.45 16 24 C -0.14 -3.90 10.05 22.27 0.22 -3.68 16 25 C -0.12 -2.87 10.05 22.27 0.22 -2.65 16 26 C -0.12 -2.83 10.05 22.27 0.22 -2.61 16 27 C -0.12 -3.37 9.67 22.27 0.22 -3.16 16 28 H 0.07 3.83 6.14 -2.39 -0.01 3.81 16 29 H 0.01 0.48 7.86 -2.39 -0.02 0.46 16 30 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.02 1.00 7.72 -2.39 -0.02 0.98 16 32 H 0.09 4.76 5.97 -2.39 -0.01 4.74 16 33 H 0.27 12.81 8.31 -92.71 -0.77 12.04 16 34 H 0.06 2.32 7.25 -2.38 -0.02 2.31 16 35 H 0.07 2.70 7.87 -2.39 -0.02 2.68 16 36 H 0.17 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.15 2.57 7.34 -2.39 -0.02 2.55 16 38 H 0.16 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.14 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.16 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.10 3.91 6.85 -2.91 -0.02 3.89 16 42 H 0.13 3.20 8.06 -2.91 -0.02 3.18 16 43 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 44 H 0.15 2.39 8.06 -2.91 -0.02 2.36 16 45 H 0.14 3.20 7.95 -2.91 -0.02 3.18 16 Total: -1.00 -77.84 376.41 2.19 -75.66 By element: Atomic # 1 Polarization: 30.43 SS G_CDS: 0.99 Total: 31.42 kcal Atomic # 6 Polarization: -36.46 SS G_CDS: 5.63 Total: -30.82 kcal Atomic # 7 Polarization: -67.53 SS G_CDS: -1.51 Total: -69.04 kcal Atomic # 8 Polarization: -94.76 SS G_CDS: -4.65 Total: -99.42 kcal Atomic # 14 Polarization: 37.93 SS G_CDS: 2.03 Total: 39.96 kcal Atomic # 16 Polarization: 52.53 SS G_CDS: -0.30 Total: 52.23 kcal Total: -77.84 2.19 -75.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279236136.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.933 kcal (2) G-P(sol) polarization free energy of solvation -77.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.86 seconds