Wall clock time and date at job start Sat Apr 11 2020 05:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46503 * 119.99657 * 2 1 4 4 C 1.50693 * 109.47225 * 270.00094 * 3 2 1 5 5 H 1.08006 * 120.00409 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00246 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00656 * 180.02562 * 6 4 3 8 8 Si 1.86806 * 119.99500 * 359.97438 * 6 4 3 9 9 H 1.48499 * 109.47134 * 90.00022 * 8 6 4 10 10 H 1.48498 * 109.46972 * 210.00099 * 8 6 4 11 11 H 1.48499 * 109.47202 * 329.99789 * 8 6 4 12 12 C 1.34776 * 119.99986 * 180.02562 * 2 1 3 13 13 O 1.21286 * 119.99703 * 185.13061 * 12 2 1 14 14 C 1.50695 * 120.00281 * 5.12080 * 12 2 1 15 15 H 1.09004 * 109.46962 * 329.56386 * 14 12 2 16 16 C 1.52997 * 109.47610 * 209.56216 * 14 12 2 17 17 C 1.52997 * 109.47577 * 174.99891 * 16 14 12 18 18 S 1.81402 * 109.47210 * 180.02562 * 17 16 14 19 19 C 1.81402 * 101.92008 * 180.02562 * 18 17 16 20 20 O 1.42101 * 108.57863 * 294.48804 * 18 17 16 21 21 O 1.42097 * 108.57659 * 65.51684 * 18 17 16 22 22 C 1.50703 * 109.46975 * 89.56308 * 14 12 2 23 23 C 1.38234 * 120.00187 * 66.71233 * 22 14 12 24 24 C 1.38230 * 120.00033 * 179.80643 * 23 22 14 25 25 C 1.38236 * 120.00256 * 0.40760 * 24 23 22 26 26 C 1.38238 * 119.99774 * 359.84682 * 25 24 23 27 27 C 1.38237 * 119.99959 * 359.96158 * 26 25 24 28 28 H 1.09002 * 109.47019 * 272.96128 * 1 2 3 29 29 H 1.09001 * 109.47125 * 32.96462 * 1 2 3 30 30 H 1.09002 * 109.47247 * 152.96438 * 1 2 3 31 31 H 1.09001 * 109.47127 * 30.00484 * 3 2 1 32 32 H 1.09007 * 109.46524 * 150.00310 * 3 2 1 33 33 H 0.97002 * 119.99993 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.46940 * 54.99684 * 16 14 12 35 35 H 1.08998 * 109.46795 * 295.00578 * 16 14 12 36 36 H 1.09007 * 109.46856 * 60.00292 * 17 16 14 37 37 H 1.08999 * 109.47139 * 300.00395 * 17 16 14 38 38 H 1.08999 * 109.47219 * 59.99630 * 19 18 17 39 39 H 1.08999 * 109.46794 * 180.02562 * 19 18 17 40 40 H 1.09006 * 109.46789 * 299.99763 * 19 18 17 41 41 H 1.08000 * 119.99817 * 0.02562 * 23 22 14 42 42 H 1.08000 * 119.99699 * 180.23259 * 24 23 22 43 43 H 1.07992 * 120.00071 * 179.82962 * 25 24 23 44 44 H 1.07997 * 120.00103 * 179.97438 * 26 25 24 45 45 H 1.07999 * 119.99729 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4207 5 1 2.0973 1.0963 -2.2417 6 6 3.1267 2.8776 -1.6727 7 7 3.3455 3.2576 -2.9126 8 14 3.7336 3.9288 -0.2528 9 1 5.1067 3.5070 0.1239 10 1 3.7495 5.3555 -0.6646 11 1 2.8270 3.7597 0.9111 12 6 2.1389 -1.1672 -0.0005 13 8 3.3481 -1.1693 0.0934 14 6 1.3900 -2.4696 -0.1176 15 1 0.4033 -2.3632 0.3334 16 6 2.1659 -3.5711 0.6073 17 6 1.3473 -4.8637 0.5960 18 16 2.2671 -6.1694 1.4561 19 6 1.1320 -7.5781 1.3216 20 8 3.4412 -6.4621 0.7112 21 8 2.3857 -5.8122 2.8263 22 6 1.2408 -2.8343 -1.5722 23 6 2.3563 -3.1587 -2.3214 24 6 2.2190 -3.4970 -3.6546 25 6 0.9672 -3.5029 -4.2409 26 6 -0.1478 -3.1734 -3.4930 27 6 -0.0109 -2.8389 -2.1588 28 1 -0.3633 0.0531 1.0263 29 1 -0.3633 0.8622 -0.5592 30 1 -0.3634 -0.9154 -0.4671 31 1 1.6084 2.0284 0.5139 32 1 3.1499 1.1384 0.5138 33 1 3.8223 4.0836 -3.0898 34 1 2.3510 -3.2673 1.6376 35 1 3.1168 -3.7387 0.1015 36 1 1.1623 -5.1675 -0.4344 37 1 0.3965 -4.6960 1.1017 38 1 0.9539 -7.8021 0.2699 39 1 1.5728 -8.4476 1.8092 40 1 0.1871 -7.3307 1.8055 41 1 3.3347 -3.1511 -1.8642 42 1 3.0902 -3.7541 -4.2389 43 1 0.8603 -3.7646 -5.2831 44 1 -1.1258 -3.1776 -3.9511 45 1 -0.8820 -2.5811 -1.5746 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279306521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:33 Heat of formation + Delta-G solvation = -75.323923 kcal Electronic energy + Delta-G solvation = -28012.171079 eV Core-core repulsion = 24122.455123 eV Total energy + Delta-G solvation = -3889.715956 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 5.87 seconds Orbital eigenvalues (eV) -40.18749 -38.40716 -37.15557 -36.21479 -35.34254 -34.80629 -32.54051 -31.16861 -30.75537 -29.93377 -28.86121 -27.32710 -25.84750 -23.40682 -22.57653 -22.32153 -20.69354 -19.10673 -18.46010 -17.14462 -16.95282 -16.87719 -16.62938 -16.28003 -15.98036 -15.47259 -15.21750 -14.69451 -14.46304 -14.40944 -14.04238 -13.64851 -13.54276 -13.31973 -13.17015 -12.99461 -12.77798 -12.42227 -12.32904 -12.25095 -12.21287 -12.16538 -12.13041 -11.87114 -11.50566 -11.40081 -11.26711 -11.01123 -10.92581 -10.69760 -10.59891 -10.47522 -10.15357 -9.56096 -9.26709 -8.78892 -8.58963 -8.47116 -7.72880 -6.08677 -4.07655 -0.26936 1.40806 1.52777 2.50895 3.22829 3.29332 3.34891 3.36995 3.38260 3.75408 3.75654 3.93491 4.39345 4.40433 4.40853 4.44879 4.66613 4.81276 4.85990 5.00988 5.08066 5.13373 5.23302 5.26306 5.27470 5.30327 5.43017 5.54458 5.57831 5.67493 5.76704 5.80408 6.00365 6.07007 6.13761 6.16477 6.54407 6.64179 6.65665 6.71998 6.93861 7.09990 7.29484 7.60189 8.19175 8.46379 8.87745 8.96311 9.51406 11.04587 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012603 B = 0.003621 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.239534 B = 7730.524159 C = 8907.951594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.593 5.593 3 C 0.214 3.786 4 C -0.529 4.529 5 H 0.074 0.926 6 C 0.073 3.927 7 N -0.897 5.897 8 Si 0.876 3.124 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.517 3.483 13 O -0.535 6.535 14 C -0.062 4.062 15 H 0.099 0.901 16 C -0.091 4.091 17 C -0.608 4.608 18 S 2.419 3.581 19 C -0.659 4.659 20 O -0.935 6.935 21 O -0.939 6.939 22 C -0.072 4.072 23 C -0.099 4.099 24 C -0.115 4.115 25 C -0.121 4.121 26 C -0.122 4.122 27 C -0.114 4.114 28 H 0.047 0.953 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.030 0.970 32 H 0.038 0.962 33 H 0.264 0.736 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.128 0.872 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.129 0.871 42 H 0.122 0.878 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.987 -20.548 4.694 24.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.324 5.324 3 C 0.094 3.906 4 C -0.567 4.567 5 H 0.092 0.908 6 C -0.130 4.130 7 N -0.535 5.535 8 Si 0.703 3.297 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.303 3.697 13 O -0.412 6.412 14 C -0.084 4.084 15 H 0.117 0.883 16 C -0.130 4.130 17 C -0.737 4.737 18 S 2.601 3.399 19 C -0.808 4.808 20 O -0.932 6.932 21 O -0.936 6.936 22 C -0.072 4.072 23 C -0.117 4.117 24 C -0.133 4.133 25 C -0.139 4.139 26 C -0.140 4.140 27 C -0.132 4.132 28 H 0.065 0.935 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.154 0.846 37 H 0.152 0.848 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.140 0.860 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.436 -20.349 5.054 23.420 hybrid contribution -0.686 0.725 -0.012 0.998 sum -11.122 -19.624 5.042 23.113 Atomic orbital electron populations 1.21773 0.81152 1.03051 1.00636 1.47776 1.06210 1.07014 1.71410 1.19692 0.92563 0.79905 0.98442 1.21315 1.37002 1.07211 0.91202 0.90753 1.24853 0.95223 0.97332 0.95559 1.69898 1.41430 1.23532 1.18656 0.86859 0.80192 0.79748 0.82936 1.19854 1.21078 1.19069 1.20016 0.87850 0.84593 0.77255 1.90672 1.13880 1.86937 1.49750 1.20314 1.00797 0.93625 0.93685 0.88277 1.21170 0.98636 0.90396 1.02762 1.30355 1.13684 1.14540 1.15132 1.07891 0.77521 0.78321 0.76117 1.30300 1.17934 1.20884 1.11632 1.93615 1.42623 1.83653 1.73355 1.93604 1.85799 1.82344 1.31886 1.19378 0.93798 1.00084 0.93939 1.21177 0.98842 0.97467 0.94211 1.21159 0.97500 0.99724 0.94922 1.21142 0.92842 1.00264 0.99623 1.21047 0.98631 1.00208 0.94077 1.20978 0.96350 1.00488 0.95359 0.93482 0.90551 0.91906 0.95210 0.94356 0.92573 0.89390 0.88683 0.84647 0.84815 0.85353 0.85417 0.85418 0.85292 0.85956 0.86288 0.86195 0.86133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.17 10.05 59.85 0.60 1.77 16 2 N -0.59 -12.11 2.86 -182.95 -0.52 -12.63 16 3 C 0.21 5.27 4.28 -5.20 -0.02 5.24 16 4 C -0.53 -15.25 9.94 -34.44 -0.34 -15.59 16 5 H 0.07 2.37 8.06 -52.48 -0.42 1.94 16 6 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 7 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 8 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 9 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 12 C 0.52 10.32 6.50 -10.99 -0.07 10.25 16 13 O -0.54 -12.84 15.82 5.55 0.09 -12.76 16 14 C -0.06 -0.87 1.63 -92.93 -0.15 -1.02 16 15 H 0.10 1.08 6.12 -51.93 -0.32 0.76 16 16 C -0.09 -1.15 4.03 -26.73 -0.11 -1.26 16 17 C -0.61 -4.67 5.62 37.16 0.21 -4.46 16 18 S 2.42 20.50 5.36 -107.50 -0.58 19.92 16 19 C -0.66 -2.76 10.62 101.05 1.07 -1.69 16 20 O -0.94 -11.90 18.10 -57.83 -1.05 -12.95 16 21 O -0.94 -11.53 18.10 -57.83 -1.05 -12.58 16 22 C -0.07 -1.01 3.69 -104.62 -0.39 -1.40 16 23 C -0.10 -1.53 8.90 -39.59 -0.35 -1.88 16 24 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 25 C -0.12 -1.47 10.05 -39.58 -0.40 -1.87 16 26 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 27 C -0.11 -1.37 8.95 -39.58 -0.35 -1.72 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 1.21 8.09 -51.93 -0.42 0.79 16 30 H 0.06 0.77 4.37 -51.93 -0.23 0.54 16 31 H 0.03 0.70 7.13 -51.93 -0.37 0.33 16 32 H 0.04 1.01 6.79 -51.93 -0.35 0.65 16 33 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 34 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.09 1.34 6.74 -51.93 -0.35 0.99 16 36 H 0.14 0.86 7.38 -51.92 -0.38 0.48 16 37 H 0.13 0.58 8.14 -51.92 -0.42 0.16 16 38 H 0.13 0.34 8.14 -51.92 -0.42 -0.08 16 39 H 0.13 0.49 8.14 -51.92 -0.42 0.07 16 40 H 0.13 0.28 8.14 -51.92 -0.42 -0.14 16 41 H 0.13 2.13 7.14 -52.49 -0.37 1.75 16 42 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 43 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 44 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 45 H 0.12 1.13 7.09 -52.49 -0.37 0.76 16 LS Contribution 382.46 15.07 5.76 5.76 Total: -1.00 -40.71 382.46 -8.99 -49.71 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -6.56 Total: 0.83 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: -1.19 Total: -15.37 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.25 Total: -39.62 kcal Atomic # 8 Polarization: -36.28 SS G_CDS: -2.01 Total: -38.28 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Atomic # 16 Polarization: 20.50 SS G_CDS: -0.58 Total: 19.92 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -40.71 -8.99 -49.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279306521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.618 kcal (2) G-P(sol) polarization free energy of solvation -40.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.87 seconds