Wall clock time and date at job start Sat Apr 11 2020 05:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42899 * 109.47158 * 2 1 4 4 C 1.35898 * 117.00257 * 179.97438 * 3 2 1 5 5 C 1.38759 * 120.05302 * 0.02562 * 4 3 2 6 6 C 1.38115 * 119.94212 * 179.97438 * 5 4 3 7 7 C 1.38297 * 120.05871 * 359.74778 * 6 5 4 8 8 C 1.38245 * 120.10742 * 0.51174 * 7 6 5 9 9 S 1.76201 * 119.97294 * 179.76910 * 8 7 6 10 10 O 1.42094 * 106.40360 * 156.18065 * 9 8 7 11 11 O 1.42101 * 106.40061 * 23.25554 * 9 8 7 12 12 N 1.65602 * 107.21409 * 269.72339 * 9 8 7 13 13 C 1.46496 * 120.00281 * 90.00002 * 12 9 8 14 14 C 1.50706 * 109.47106 * 264.99512 * 13 12 9 15 15 H 1.07999 * 119.99515 * 0.02562 * 14 13 12 16 16 C 1.37870 * 120.00176 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99883 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00043 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47293 * 89.99746 * 18 16 14 20 20 H 1.48504 * 109.47104 * 209.99992 * 18 16 14 21 21 H 1.48495 * 109.47249 * 329.99739 * 18 16 14 22 22 C 1.46507 * 119.99575 * 269.99554 * 12 9 8 23 23 C 1.52998 * 109.46948 * 265.00178 * 22 12 9 24 24 C 1.53003 * 117.49745 * 243.74629 * 23 22 12 25 25 C 1.53005 * 117.49777 * 175.08712 * 23 22 12 26 26 C 1.38166 * 120.05786 * 359.48722 * 8 7 6 27 27 H 1.08998 * 109.47316 * 300.00447 * 1 2 3 28 28 H 1.09005 * 109.46733 * 60.00535 * 1 2 3 29 29 H 1.08995 * 109.46752 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47316 * 239.99552 * 2 1 3 31 31 H 1.09005 * 109.46733 * 119.99465 * 2 1 3 32 32 H 1.07997 * 120.02671 * 359.95696 * 5 4 3 33 33 H 1.07996 * 119.97448 * 180.02562 * 6 5 4 34 34 H 1.07999 * 119.94608 * 180.27621 * 7 6 5 35 35 H 1.09001 * 109.47001 * 144.99803 * 13 12 9 36 36 H 1.09000 * 109.47574 * 25.00019 * 13 12 9 37 37 H 0.97004 * 119.99507 * 180.02562 * 17 16 14 38 38 H 1.08994 * 109.47044 * 25.00454 * 22 12 9 39 39 H 1.09003 * 109.47057 * 145.00379 * 22 12 9 40 40 H 1.08997 * 115.55547 * 29.41875 * 23 22 12 41 41 H 1.08999 * 117.50006 * 0.02562 * 24 23 22 42 42 H 1.09001 * 117.49698 * 145.02265 * 24 23 22 43 43 H 1.08997 * 117.49844 * 214.97724 * 25 23 22 44 44 H 1.08999 * 117.49592 * 0.02562 * 25 23 22 45 45 H 1.07990 * 120.03156 * 180.23876 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.2000 0.4258 0.0005 6 6 5.5688 0.6094 0.0005 7 6 6.0962 1.8879 -0.0047 8 6 5.2551 2.9850 0.0007 9 16 5.9309 4.6123 0.0002 10 8 4.9308 5.4620 -0.5446 11 8 7.2391 4.5033 -0.5441 12 7 6.1189 5.0654 1.5819 13 6 7.3737 4.7793 2.2817 14 6 7.2404 3.4858 3.0435 15 1 6.3137 2.9321 3.0093 16 6 8.3013 3.0094 3.7840 17 7 9.4295 3.6839 3.8259 18 14 8.1362 1.4057 4.7276 19 1 8.5556 0.2756 3.8604 20 1 9.0001 1.4505 5.9347 21 1 6.7217 1.2162 5.1381 22 6 5.0303 5.7526 2.2812 23 6 5.2483 7.2649 2.2029 24 6 5.4857 8.0133 3.5161 25 6 4.1540 8.1671 2.7771 26 6 3.8850 2.8067 0.0007 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3632 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.7886 -0.5728 0.0008 33 1 6.2280 -0.2460 0.0001 34 1 7.1669 2.0294 -0.0092 35 1 7.5948 5.5892 2.9768 36 1 8.1826 4.6921 1.5563 37 1 10.1760 3.3485 4.3466 38 1 4.0796 5.4978 1.8129 39 1 5.0158 5.4412 3.3257 40 1 5.7795 7.6183 1.3192 41 1 5.4870 7.4282 4.4358 42 1 6.1728 8.8593 3.4961 43 1 3.9656 9.1140 2.2713 44 1 3.2790 7.6831 3.2110 45 1 3.2284 3.6640 0.0010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282752544.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:46 Heat of formation + Delta-G solvation = -61.372108 kcal Electronic energy + Delta-G solvation = -28192.197801 eV Core-core repulsion = 24303.086841 eV Total energy + Delta-G solvation = -3889.110960 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.07944 -37.54169 -37.44973 -36.63480 -35.24290 -34.77641 -32.42107 -32.14721 -31.07338 -29.42681 -27.87652 -25.38304 -24.34597 -22.55694 -22.48665 -22.01365 -21.86811 -20.34670 -19.05417 -17.82226 -16.82153 -16.49982 -16.22876 -16.16147 -16.08008 -15.77342 -15.49795 -14.69451 -14.48337 -14.13734 -13.79740 -13.53112 -13.47543 -13.19769 -12.82818 -12.64396 -12.54145 -12.33920 -12.13772 -11.84023 -11.71256 -11.50274 -11.43746 -11.25355 -11.16330 -11.14179 -11.07695 -10.92631 -10.86774 -10.58576 -10.40209 -10.14991 -10.03053 -9.73547 -9.49678 -9.19995 -8.49663 -8.17247 -8.05929 -6.11403 -4.17430 0.87616 1.16929 1.54700 3.09775 3.23097 3.30716 3.32792 3.48740 3.81978 4.16752 4.35075 4.36226 4.68366 4.69001 4.85405 4.88133 4.96239 5.03297 5.09704 5.22481 5.25006 5.27044 5.33341 5.44148 5.49519 5.54123 5.63590 5.69570 5.79020 5.86523 5.91403 5.99074 6.17041 6.21636 6.24537 6.37902 6.42325 6.44852 6.56018 6.66283 6.73324 7.35497 7.39523 7.42598 7.62385 7.85842 8.14804 8.87710 9.48575 10.96561 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008218 B = 0.005150 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3406.349655 B = 5435.338638 C = 7064.857939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 O -0.316 6.316 4 C 0.100 3.900 5 C -0.161 4.161 6 C -0.104 4.104 7 C -0.034 4.034 8 C -0.627 4.627 9 S 2.688 3.312 10 O -0.972 6.972 11 O -0.954 6.954 12 N -0.976 5.976 13 C 0.244 3.756 14 C -0.540 4.540 15 H 0.062 0.938 16 C 0.067 3.933 17 N -0.888 5.888 18 Si 0.889 3.111 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.162 3.838 23 C -0.160 4.160 24 C -0.175 4.175 25 C -0.181 4.181 26 C -0.055 4.055 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.129 0.871 33 H 0.132 0.868 34 H 0.147 0.853 35 H 0.045 0.955 36 H 0.053 0.947 37 H 0.264 0.736 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.548 -3.750 -5.103 14.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.230 6.230 4 C 0.054 3.946 5 C -0.180 4.180 6 C -0.123 4.123 7 C -0.053 4.053 8 C -0.711 4.711 9 S 2.777 3.223 10 O -0.963 6.963 11 O -0.945 6.945 12 N -0.814 5.814 13 C 0.122 3.878 14 C -0.579 4.579 15 H 0.080 0.920 16 C -0.136 4.136 17 N -0.526 5.526 18 Si 0.716 3.284 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.199 1.199 22 C 0.035 3.965 23 C -0.180 4.180 24 C -0.212 4.212 25 C -0.219 4.219 26 C -0.075 4.075 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.147 0.853 33 H 0.150 0.850 34 H 0.164 0.836 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.103 0.897 40 H 0.121 0.879 41 H 0.115 0.885 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.111 0.889 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -13.301 -3.152 -5.741 14.826 hybrid contribution -0.132 -2.001 1.062 2.269 sum -13.433 -5.153 -4.679 15.130 Atomic orbital electron populations 1.21767 0.92745 1.02712 1.03619 1.22772 0.95904 0.82264 1.01299 1.86067 1.18827 1.28982 1.89171 1.18917 0.82250 0.94176 0.99219 1.21436 0.94641 0.97884 1.04046 1.21081 0.94302 0.97667 0.99218 1.20935 1.00495 0.91179 0.92707 1.31198 1.01770 1.24714 1.13435 1.02066 0.73317 0.73503 0.73417 1.93526 1.61243 1.64108 1.77395 1.93558 1.37319 1.86718 1.76891 1.57358 1.24174 1.69411 1.30471 1.19286 0.78644 0.96750 0.93114 1.21558 0.99325 1.07024 1.29993 0.92021 1.24897 0.95114 0.97159 0.96413 1.69934 1.03206 1.38583 1.40906 0.86645 0.78060 0.84009 0.79641 1.20516 1.21111 1.19927 1.20664 0.88382 0.88352 0.99065 1.22795 1.02879 0.94453 0.97849 1.23017 0.98881 1.02968 0.96377 1.22919 0.93005 1.01255 1.04737 1.20060 0.93169 0.95631 0.98666 0.91419 0.91495 0.90491 0.92172 0.92066 0.85325 0.85028 0.83554 0.93675 0.92900 0.92605 0.91090 0.89665 0.87884 0.88498 0.89238 0.89167 0.88936 0.83954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.28 37.16 0.38 -0.76 16 2 C 0.05 0.51 5.46 37.16 0.20 0.72 16 3 O -0.32 -4.36 10.14 -19.42 -0.20 -4.56 16 4 C 0.10 1.54 6.69 -39.21 -0.26 1.28 16 5 C -0.16 -2.27 9.04 -39.43 -0.36 -2.62 16 6 C -0.10 -1.59 10.04 -39.60 -0.40 -1.98 16 7 C -0.03 -0.61 9.52 -39.56 -0.38 -0.99 16 8 C -0.63 -11.64 5.97 -39.61 -0.24 -11.88 16 9 S 2.69 54.14 5.65 -107.50 -0.61 53.53 16 10 O -0.97 -19.68 16.25 -57.17 -0.93 -20.60 16 11 O -0.95 -21.74 15.82 -57.17 -0.90 -22.65 16 12 N -0.98 -19.95 2.77 -115.66 -0.32 -20.27 16 13 C 0.24 5.90 5.43 -5.19 -0.03 5.87 16 14 C -0.54 -13.87 9.38 -34.44 -0.32 -14.19 16 15 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 16 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 17 N -0.89 -24.88 13.29 55.43 0.74 -24.14 16 18 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 20 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 22 C 0.16 2.84 5.63 -4.04 -0.02 2.82 16 23 C -0.16 -2.59 6.01 -90.62 -0.54 -3.13 16 24 C -0.18 -2.53 10.18 -26.69 -0.27 -2.80 16 25 C -0.18 -2.39 10.26 -26.69 -0.27 -2.66 16 26 C -0.06 -0.95 9.46 -39.43 -0.37 -1.32 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.51 7.66 -51.93 -0.40 0.11 16 31 H 0.06 0.55 7.66 -51.93 -0.40 0.16 16 32 H 0.13 1.38 6.30 -52.49 -0.33 1.05 16 33 H 0.13 1.65 8.06 -52.49 -0.42 1.22 16 34 H 0.15 2.72 7.61 -52.49 -0.40 2.32 16 35 H 0.05 1.14 8.11 -51.93 -0.42 0.71 16 36 H 0.05 1.40 6.91 -51.93 -0.36 1.04 16 37 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.07 1.12 7.61 -51.93 -0.40 0.73 16 39 H 0.09 1.49 7.84 -51.93 -0.41 1.09 16 40 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 41 H 0.10 1.41 8.03 -51.93 -0.42 0.99 16 42 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.14 2.26 7.62 -52.49 -0.40 1.86 16 LS Contribution 390.10 15.07 5.88 5.88 Total: -1.00 -31.33 390.10 -11.19 -42.52 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -6.85 Total: 4.73 kcal Atomic # 6 Polarization: -26.98 SS G_CDS: -2.98 Total: -29.96 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: 0.42 Total: -44.42 kcal Atomic # 8 Polarization: -45.78 SS G_CDS: -2.03 Total: -47.81 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 54.14 SS G_CDS: -0.61 Total: 53.53 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.33 -11.19 -42.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282752544.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.851 kcal (2) G-P(sol) polarization free energy of solvation -31.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds