Wall clock time and date at job start Sat Apr 11 2020 05:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35892 * 117.00529 * 2 1 4 4 C 1.38757 * 120.05486 * 0.02562 * 3 2 1 5 5 C 1.38126 * 119.94242 * 180.02562 * 4 3 2 6 6 C 1.38287 * 120.05667 * 359.97415 * 5 4 3 7 7 C 1.38239 * 120.11119 * 0.04322 * 6 5 4 8 8 C 1.50704 * 119.97146 * 179.97438 * 7 6 5 9 9 C 1.53000 * 115.54435 * 96.33461 * 8 7 6 10 10 N 1.46501 * 109.47317 * 295.41296 * 9 8 7 11 11 S 1.65600 * 119.99982 * 164.48696 * 10 9 8 12 12 O 1.42101 * 104.27919 * 181.07382 * 11 10 9 13 13 O 1.42101 * 104.27854 * 308.93620 * 11 10 9 14 14 C 1.81409 * 104.44699 * 65.00543 * 11 10 9 15 15 C 1.52999 * 109.47045 * 179.97438 * 14 11 10 16 16 C 1.50698 * 109.46908 * 179.97438 * 15 14 11 17 17 H 1.07999 * 120.00462 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99570 * 180.02562 * 16 15 14 19 19 N 1.31523 * 119.99526 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00503 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47297 * 89.99960 * 20 18 16 22 22 H 1.48501 * 109.47080 * 210.00354 * 20 18 16 23 23 H 1.48502 * 109.46814 * 329.99693 * 20 18 16 24 24 C 1.53000 * 117.50028 * 310.63015 * 8 7 6 25 25 C 1.52997 * 117.50254 * 242.00529 * 8 7 6 26 26 C 1.38165 * 120.06058 * 0.23961 * 7 6 5 27 27 H 1.08996 * 109.46500 * 300.00215 * 1 2 3 28 28 H 1.09004 * 109.46821 * 59.99715 * 1 2 3 29 29 H 1.08996 * 109.47268 * 179.97438 * 1 2 3 30 30 H 1.07997 * 120.02809 * 0.03735 * 4 3 2 31 31 H 1.08005 * 119.96962 * 179.97438 * 5 4 3 32 32 H 1.07998 * 119.93831 * 180.02562 * 6 5 4 33 33 H 1.08998 * 109.47744 * 55.41903 * 9 8 7 34 34 H 1.09002 * 109.47008 * 175.41984 * 9 8 7 35 35 H 0.97001 * 119.99987 * 344.49739 * 10 9 8 36 36 H 1.08996 * 109.46879 * 300.00234 * 14 11 10 37 37 H 1.09001 * 109.47118 * 59.99752 * 14 11 10 38 38 H 1.09002 * 109.47457 * 300.00306 * 15 14 11 39 39 H 1.09005 * 109.46603 * 60.00217 * 15 14 11 40 40 H 0.97000 * 119.99731 * 179.97438 * 19 18 16 41 41 H 1.08998 * 117.49617 * 359.97438 * 24 8 7 42 42 H 1.08998 * 117.49965 * 145.01288 * 24 8 7 43 43 H 1.08995 * 117.49896 * 214.97626 * 25 8 7 44 44 H 1.08999 * 117.49826 * 0.02562 * 25 8 7 45 45 H 1.07990 * 120.03304 * 179.74642 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2107 0.0000 4 6 1.2916 2.3753 0.0005 5 6 1.9212 3.6047 0.0000 6 6 3.3022 3.6756 -0.0005 7 6 4.0562 2.5169 -0.0014 8 6 5.5610 2.5978 -0.0026 9 6 6.2291 2.4808 1.3689 10 7 5.8435 3.6246 2.1991 11 16 6.0919 3.5808 3.8358 12 8 5.5834 4.8236 4.3008 13 8 5.5094 2.3513 4.2459 14 6 7.8958 3.5228 4.0185 15 6 8.2568 3.4796 5.5047 16 6 9.7553 3.4307 5.6564 17 1 10.3871 3.4309 4.7805 18 6 10.3197 3.3858 6.9135 19 7 11.6276 3.3437 7.0459 20 14 9.2271 3.3848 8.4286 21 1 8.8956 1.9854 8.7989 22 1 9.9413 4.0389 9.5544 23 1 7.9758 4.1294 8.1369 24 6 6.2182 3.5185 -1.0328 25 6 6.2998 2.0000 -1.2016 26 6 3.4313 1.2846 -0.0068 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 0.2130 2.3204 0.0016 31 1 1.3343 4.5114 0.0000 32 1 3.7925 4.6379 -0.0005 33 1 5.9091 1.5573 1.8514 34 1 7.3121 2.4700 1.2457 35 1 5.4427 4.4075 1.7901 36 1 8.2825 2.6316 3.5242 37 1 8.3358 4.4103 3.5637 38 1 7.8700 4.3710 5.9986 39 1 7.8167 2.5922 5.9597 40 1 12.0248 3.3124 7.9303 41 1 5.5621 4.0653 -1.7100 42 1 7.1267 4.0412 -0.7336 43 1 7.2620 1.5237 -1.0135 44 1 5.6974 1.5485 -1.9899 45 1 4.0207 0.3797 -0.0116 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289776952.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:50 Heat of formation + Delta-G solvation = -65.787152 kcal Electronic energy + Delta-G solvation = -27085.750200 eV Core-core repulsion = 23196.447789 eV Total energy + Delta-G solvation = -3889.302411 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.56197 -39.03530 -36.85113 -36.62547 -35.53172 -34.12366 -33.93915 -31.47294 -31.22014 -30.20255 -27.61893 -26.51724 -25.96014 -23.48172 -22.94458 -22.02552 -21.29046 -19.99632 -18.96554 -18.05764 -17.51251 -16.85467 -16.47946 -16.30390 -16.09955 -15.99743 -15.57972 -15.38970 -14.80826 -14.40700 -14.30634 -14.14852 -13.79936 -13.59288 -13.36748 -12.93510 -12.80023 -12.76954 -12.27465 -11.92377 -11.88276 -11.75436 -11.68930 -11.59574 -11.55478 -11.41594 -11.24523 -11.17035 -11.02389 -10.67015 -10.43779 -10.30495 -10.13929 -9.78477 -9.47830 -9.16394 -9.00281 -8.65577 -8.41346 -6.16101 -4.17224 0.69415 1.07994 1.24833 2.93674 3.02522 3.27489 3.34729 3.39295 3.50290 3.53940 4.16748 4.26402 4.36654 4.37859 4.55229 4.64075 4.68302 4.73407 4.80692 4.82027 4.83912 5.07696 5.14716 5.15857 5.23343 5.28221 5.34870 5.40434 5.50539 5.54160 5.61530 5.64692 5.68117 5.81751 5.87672 5.93960 6.06918 6.21095 6.29322 6.39488 6.52102 6.82765 6.93974 7.08796 7.14948 7.55544 8.37051 8.84941 9.43741 10.96263 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017018 B = 0.002722 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.909930 B =10283.643941 C =10897.988987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.127 3.873 4 C -0.211 4.211 5 C -0.080 4.080 6 C -0.146 4.146 7 C -0.003 4.003 8 C -0.102 4.102 9 C 0.158 3.842 10 N -1.121 6.121 11 S 2.590 3.410 12 O -0.967 6.967 13 O -0.965 6.965 14 C -0.583 4.583 15 C -0.007 4.007 16 C -0.519 4.519 17 H 0.078 0.922 18 C 0.071 3.929 19 N -0.896 5.896 20 Si 0.869 3.131 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.262 1.262 24 C -0.162 4.162 25 C -0.156 4.156 26 C -0.139 4.139 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.099 0.901 30 H 0.126 0.874 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.413 0.587 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.032 0.968 39 H 0.028 0.972 40 H 0.266 0.734 41 H 0.098 0.902 42 H 0.104 0.896 43 H 0.104 0.896 44 H 0.099 0.901 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.281 -2.454 -20.644 28.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.082 3.918 4 C -0.230 4.230 5 C -0.098 4.098 6 C -0.165 4.165 7 C -0.003 4.003 8 C -0.103 4.103 9 C 0.031 3.969 10 N -0.879 5.879 11 S 2.687 3.313 12 O -0.958 6.958 13 O -0.955 6.955 14 C -0.716 4.716 15 C -0.047 4.047 16 C -0.558 4.558 17 H 0.096 0.904 18 C -0.131 4.131 19 N -0.534 5.534 20 Si 0.696 3.304 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.186 1.186 24 C -0.199 4.199 25 C -0.193 4.193 26 C -0.158 4.158 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.118 0.882 30 H 0.144 0.856 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.105 0.895 34 H 0.091 0.909 35 H 0.246 0.754 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.051 0.949 39 H 0.046 0.954 40 H 0.076 0.924 41 H 0.116 0.884 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.118 0.882 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -19.694 -2.829 -19.774 28.051 hybrid contribution -0.284 0.458 0.394 0.668 sum -19.978 -2.371 -19.380 27.935 Atomic orbital electron populations 1.23049 0.78442 1.03926 1.01300 1.86075 1.21331 1.26950 1.88734 1.18971 0.92242 0.84163 0.96444 1.21228 0.99961 0.92485 1.09344 1.20913 0.94522 0.97012 0.97342 1.20920 0.93592 0.98098 1.03841 1.18674 0.92414 0.92234 0.96949 1.20226 0.90484 1.08020 0.91614 1.20766 0.98046 0.89418 0.88648 1.55645 1.78941 1.25996 1.27286 1.05587 0.79136 0.74231 0.72349 1.93556 1.78894 1.44668 1.78646 1.93552 1.75434 1.46274 1.80218 1.30304 1.21457 1.10870 1.09008 1.19409 1.00531 0.97859 0.86871 1.20847 0.88396 1.52124 0.94409 0.90416 1.24991 0.94985 0.94145 0.99023 1.69886 1.09713 1.49979 1.23811 0.86922 0.81417 0.79198 0.82902 1.19659 1.20773 1.18608 1.23124 1.02692 0.93284 1.00828 1.23085 1.01833 0.96281 0.98134 1.20228 0.91205 0.98362 1.05985 0.92587 0.92770 0.88244 0.85623 0.85695 0.85777 0.89550 0.90890 0.75354 0.85757 0.85489 0.94948 0.95370 0.92393 0.88380 0.87794 0.87780 0.88247 0.85007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.39 10.50 -19.40 -0.20 -3.59 16 3 C 0.13 1.42 6.69 -39.21 -0.26 1.16 16 4 C -0.21 -2.07 9.04 -39.43 -0.36 -2.42 16 5 C -0.08 -0.76 10.04 -39.60 -0.40 -1.15 16 6 C -0.15 -1.46 9.35 -39.56 -0.37 -1.83 16 7 C 0.00 -0.03 4.90 -104.65 -0.51 -0.54 16 8 C -0.10 -0.94 1.64 -155.66 -0.26 -1.20 16 9 C 0.16 1.72 5.96 -4.04 -0.02 1.70 16 10 N -1.12 -14.04 5.78 -10.61 -0.06 -14.10 16 11 S 2.59 44.29 5.46 -107.50 -0.59 43.70 16 12 O -0.97 -19.23 18.08 -57.54 -1.04 -20.27 16 13 O -0.96 -19.32 17.49 -57.54 -1.01 -20.33 16 14 C -0.58 -10.56 6.01 37.16 0.22 -10.34 16 15 C -0.01 -0.18 4.05 -27.88 -0.11 -0.29 16 16 C -0.52 -14.47 9.66 -34.44 -0.33 -14.80 16 17 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 18 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 19 N -0.90 -27.08 13.96 55.43 0.77 -26.31 16 20 Si 0.87 21.59 27.47 -169.99 -4.67 16.92 16 21 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 24 C -0.16 -1.21 9.66 -26.73 -0.26 -1.47 16 25 C -0.16 -1.16 9.85 -26.73 -0.26 -1.42 16 26 C -0.14 -1.58 9.60 -39.43 -0.38 -1.96 16 27 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 28 H 0.05 0.28 7.66 -51.93 -0.40 -0.11 16 29 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.13 0.94 6.30 -52.49 -0.33 0.61 16 31 H 0.13 0.90 8.06 -52.48 -0.42 0.47 16 32 H 0.12 1.04 8.02 -52.49 -0.42 0.62 16 33 H 0.09 1.03 7.68 -51.93 -0.40 0.63 16 34 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 35 H 0.41 4.48 8.55 -34.47 -0.29 4.19 16 36 H 0.12 2.01 8.14 -51.93 -0.42 1.58 16 37 H 0.13 2.08 8.14 -51.92 -0.42 1.66 16 38 H 0.03 0.77 7.20 -51.93 -0.37 0.40 16 39 H 0.03 0.66 7.57 -51.93 -0.39 0.27 16 40 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.10 0.68 8.09 -51.93 -0.42 0.26 16 42 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 389.32 15.07 5.87 5.87 Total: -1.00 -36.32 389.32 -10.15 -46.47 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -6.82 Total: 3.07 kcal Atomic # 6 Polarization: -29.02 SS G_CDS: -2.41 Total: -31.43 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: 0.71 Total: -40.41 kcal Atomic # 8 Polarization: -41.94 SS G_CDS: -2.25 Total: -44.19 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Atomic # 16 Polarization: 44.29 SS G_CDS: -0.59 Total: 43.70 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.32 -10.15 -46.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289776952.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.318 kcal (2) G-P(sol) polarization free energy of solvation -36.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds