Wall clock time and date at job start Sat Apr 11 2020 05:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35892 * 117.00529 * 2 1 4 4 C 1.38757 * 120.05486 * 0.02562 * 3 2 1 5 5 C 1.38126 * 119.94242 * 180.02562 * 4 3 2 6 6 C 1.38287 * 120.05667 * 359.97415 * 5 4 3 7 7 C 1.38239 * 120.11119 * 0.04322 * 6 5 4 8 8 C 1.50704 * 119.97146 * 179.97438 * 7 6 5 9 9 C 1.53000 * 115.54435 * 96.33461 * 8 7 6 10 10 N 1.46501 * 109.47317 * 295.41296 * 9 8 7 11 11 S 1.65600 * 119.99982 * 164.48696 * 10 9 8 12 12 O 1.42101 * 104.27919 * 181.07382 * 11 10 9 13 13 O 1.42101 * 104.27854 * 308.93620 * 11 10 9 14 14 C 1.81409 * 104.44699 * 65.00543 * 11 10 9 15 15 C 1.52999 * 109.47045 * 179.97438 * 14 11 10 16 16 C 1.50698 * 109.46908 * 179.97438 * 15 14 11 17 17 H 1.07999 * 120.00462 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99570 * 180.02562 * 16 15 14 19 19 N 1.31523 * 119.99526 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00503 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47297 * 89.99960 * 20 18 16 22 22 H 1.48501 * 109.47080 * 210.00354 * 20 18 16 23 23 H 1.48502 * 109.46814 * 329.99693 * 20 18 16 24 24 C 1.53000 * 117.50028 * 310.63015 * 8 7 6 25 25 C 1.52997 * 117.50254 * 242.00529 * 8 7 6 26 26 C 1.38165 * 120.06058 * 0.23961 * 7 6 5 27 27 H 1.08996 * 109.46500 * 300.00215 * 1 2 3 28 28 H 1.09004 * 109.46821 * 59.99715 * 1 2 3 29 29 H 1.08996 * 109.47268 * 179.97438 * 1 2 3 30 30 H 1.07997 * 120.02809 * 0.03735 * 4 3 2 31 31 H 1.08005 * 119.96962 * 179.97438 * 5 4 3 32 32 H 1.07998 * 119.93831 * 180.02562 * 6 5 4 33 33 H 1.08998 * 109.47744 * 55.41903 * 9 8 7 34 34 H 1.09002 * 109.47008 * 175.41984 * 9 8 7 35 35 H 0.97001 * 119.99987 * 344.49739 * 10 9 8 36 36 H 1.08996 * 109.46879 * 300.00234 * 14 11 10 37 37 H 1.09001 * 109.47118 * 59.99752 * 14 11 10 38 38 H 1.09002 * 109.47457 * 300.00306 * 15 14 11 39 39 H 1.09005 * 109.46603 * 60.00217 * 15 14 11 40 40 H 0.97000 * 119.99731 * 179.97438 * 19 18 16 41 41 H 1.08998 * 117.49617 * 359.97438 * 24 8 7 42 42 H 1.08998 * 117.49965 * 145.01288 * 24 8 7 43 43 H 1.08995 * 117.49896 * 214.97626 * 25 8 7 44 44 H 1.08999 * 117.49826 * 0.02562 * 25 8 7 45 45 H 1.07990 * 120.03304 * 179.74642 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2107 0.0000 4 6 1.2916 2.3753 0.0005 5 6 1.9212 3.6047 0.0000 6 6 3.3022 3.6756 -0.0005 7 6 4.0562 2.5169 -0.0014 8 6 5.5610 2.5978 -0.0026 9 6 6.2291 2.4808 1.3689 10 7 5.8435 3.6246 2.1991 11 16 6.0919 3.5808 3.8358 12 8 5.5834 4.8236 4.3008 13 8 5.5094 2.3513 4.2459 14 6 7.8958 3.5228 4.0185 15 6 8.2568 3.4796 5.5047 16 6 9.7553 3.4307 5.6564 17 1 10.3871 3.4309 4.7805 18 6 10.3197 3.3858 6.9135 19 7 11.6276 3.3437 7.0459 20 14 9.2271 3.3848 8.4286 21 1 8.8956 1.9854 8.7989 22 1 9.9413 4.0389 9.5544 23 1 7.9758 4.1294 8.1369 24 6 6.2182 3.5185 -1.0328 25 6 6.2998 2.0000 -1.2016 26 6 3.4313 1.2846 -0.0068 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 0.2130 2.3204 0.0016 31 1 1.3343 4.5114 0.0000 32 1 3.7925 4.6379 -0.0005 33 1 5.9091 1.5573 1.8514 34 1 7.3121 2.4700 1.2457 35 1 5.4427 4.4075 1.7901 36 1 8.2825 2.6316 3.5242 37 1 8.3358 4.4103 3.5637 38 1 7.8700 4.3710 5.9986 39 1 7.8167 2.5922 5.9597 40 1 12.0248 3.3124 7.9303 41 1 5.5621 4.0653 -1.7100 42 1 7.1267 4.0412 -0.7336 43 1 7.2620 1.5237 -1.0135 44 1 5.6974 1.5485 -1.9899 45 1 4.0207 0.3797 -0.0116 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289776952.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:49 Heat of formation + Delta-G solvation = -91.217178 kcal Electronic energy + Delta-G solvation = -27086.852928 eV Core-core repulsion = 23196.447789 eV Total energy + Delta-G solvation = -3890.405139 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.26800 -39.73390 -38.16251 -37.51358 -37.02345 -35.88240 -35.09141 -33.45912 -31.92467 -30.90233 -28.20045 -27.87177 -27.38190 -24.18564 -23.62263 -23.16883 -22.66310 -20.74330 -20.28773 -19.37229 -18.85959 -18.21652 -17.44698 -17.11500 -17.03642 -16.81447 -16.64999 -16.42576 -16.37171 -15.77368 -15.41829 -15.02068 -14.84829 -14.79642 -14.47248 -14.22636 -13.78626 -13.69385 -13.50378 -13.22193 -13.12589 -13.11781 -13.05996 -12.92648 -12.72611 -12.33190 -12.26909 -12.22226 -12.05799 -11.94472 -11.75147 -11.70680 -11.40293 -11.20533 -10.97239 -10.83490 -10.33051 -9.76858 -9.15350 -8.35770 -6.41013 -0.69922 0.34314 0.49430 1.32366 1.34364 1.44315 1.80095 2.30159 2.34647 2.76157 2.77329 2.88549 2.98326 3.26124 3.60715 3.71263 3.87705 3.90333 4.01064 4.06437 4.11935 4.16004 4.30300 4.36812 4.37976 4.47296 4.56392 4.58816 4.62791 4.70709 4.84185 4.86235 4.89858 4.99699 5.08369 5.09949 5.12875 5.16159 5.34198 5.34575 5.48294 5.49025 5.65545 5.83253 6.14048 6.17876 6.45658 6.65100 7.23315 8.79634 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017018 B = 0.002722 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.909930 B =10283.643941 C =10897.988987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.339 6.339 3 C 0.110 3.890 4 C -0.218 4.218 5 C -0.085 4.085 6 C -0.158 4.158 7 C -0.010 4.010 8 C -0.114 4.114 9 C 0.148 3.852 10 N -1.103 6.103 11 S 2.619 3.381 12 O -0.994 6.994 13 O -0.994 6.994 14 C -0.586 4.586 15 C -0.019 4.019 16 C -0.525 4.525 17 H 0.052 0.948 18 C 0.013 3.987 19 N -0.939 5.939 20 Si 0.923 3.077 21 H -0.262 1.262 22 H -0.274 1.274 23 H -0.250 1.250 24 C -0.150 4.150 25 C -0.148 4.148 26 C -0.162 4.162 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.117 0.883 30 H 0.146 0.854 31 H 0.148 0.852 32 H 0.139 0.861 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.424 0.576 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.031 0.969 39 H 0.030 0.970 40 H 0.269 0.731 41 H 0.105 0.895 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.101 0.899 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.807 -1.871 -21.678 30.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.254 6.254 3 C 0.064 3.936 4 C -0.236 4.236 5 C -0.103 4.103 6 C -0.176 4.176 7 C -0.010 4.010 8 C -0.116 4.116 9 C 0.022 3.978 10 N -0.865 5.865 11 S 2.715 3.285 12 O -0.985 6.985 13 O -0.984 6.984 14 C -0.718 4.718 15 C -0.058 4.058 16 C -0.564 4.564 17 H 0.070 0.930 18 C -0.185 4.185 19 N -0.579 5.579 20 Si 0.746 3.254 21 H -0.186 1.186 22 H -0.199 1.199 23 H -0.174 1.174 24 C -0.187 4.187 25 C -0.186 4.186 26 C -0.181 4.181 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.135 0.865 30 H 0.163 0.837 31 H 0.166 0.834 32 H 0.157 0.843 33 H 0.091 0.909 34 H 0.114 0.886 35 H 0.260 0.740 36 H 0.161 0.839 37 H 0.162 0.838 38 H 0.049 0.951 39 H 0.048 0.952 40 H 0.078 0.922 41 H 0.123 0.877 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.120 0.880 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -21.228 -2.240 -20.815 29.815 hybrid contribution 0.169 0.240 0.577 0.648 sum -21.059 -2.000 -20.238 29.275 Atomic orbital electron populations 1.23315 0.76571 1.05456 1.02139 1.86040 1.23407 1.27111 1.88805 1.19219 0.92557 0.84872 0.96905 1.21505 1.01048 0.92182 1.08893 1.21275 0.94757 0.97812 0.96474 1.21207 0.94045 0.98568 1.03754 1.18854 0.93216 0.92127 0.96774 1.20118 0.89857 1.10446 0.91181 1.21008 0.99635 0.88002 0.89118 1.55187 1.78588 1.27076 1.25642 1.04464 0.77984 0.72854 0.73153 1.93513 1.79147 1.45730 1.80074 1.93518 1.75749 1.47586 1.81565 1.30275 1.23124 1.12795 1.05599 1.19381 0.97717 0.97780 0.90884 1.21173 0.90577 1.51032 0.93594 0.92970 1.25858 0.96228 0.94083 1.02342 1.70008 1.11493 1.51691 1.24736 0.86047 0.80065 0.79887 0.79373 1.18626 1.19932 1.17403 1.23209 1.02663 0.93288 0.99553 1.23168 1.01883 0.96633 0.96909 1.20407 0.91695 0.98778 1.07203 0.92190 0.91398 0.86505 0.83675 0.83412 0.84271 0.90903 0.88588 0.73984 0.83917 0.83756 0.95060 0.95204 0.92152 0.87651 0.86918 0.86780 0.88029 0.85459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.35 16 2 O -0.34 -7.20 10.50 -92.33 -0.97 -8.17 16 3 C 0.11 2.42 6.69 22.51 0.15 2.57 16 4 C -0.22 -3.99 9.04 22.37 0.20 -3.78 16 5 C -0.09 -1.46 10.04 22.25 0.22 -1.24 16 6 C -0.16 -2.87 9.35 22.28 0.21 -2.66 16 7 C -0.01 -0.19 4.90 -19.88 -0.10 -0.29 16 8 C -0.11 -1.91 1.64 -52.93 -0.09 -2.00 16 9 C 0.15 2.96 5.96 86.38 0.52 3.48 16 10 N -1.10 -25.48 5.78 -187.49 -1.08 -26.56 16 11 S 2.62 85.84 5.46 -56.49 -0.31 85.53 16 12 O -0.99 -38.12 18.08 -127.65 -2.31 -40.43 16 13 O -0.99 -38.94 17.49 -127.65 -2.23 -41.17 16 14 C -0.59 -20.36 6.01 71.98 0.43 -19.93 16 15 C -0.02 -0.87 4.05 29.85 0.12 -0.74 16 16 C -0.52 -29.41 9.66 25.60 0.25 -29.17 16 17 H 0.05 3.10 7.99 -2.91 -0.02 3.07 16 18 C 0.01 0.78 5.47 84.65 0.46 1.24 16 19 N -0.94 -57.60 13.96 21.45 0.30 -57.30 16 20 Si 0.92 43.99 27.47 68.60 1.88 45.88 16 21 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 22 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 23 H -0.25 -11.37 6.54 99.48 0.65 -10.71 16 24 C -0.15 -1.84 9.66 30.59 0.30 -1.55 16 25 C -0.15 -1.90 9.85 30.59 0.30 -1.60 16 26 C -0.16 -3.67 9.60 22.37 0.21 -3.45 16 27 H 0.06 0.66 7.66 -2.39 -0.02 0.64 16 28 H 0.07 0.61 7.66 -2.38 -0.02 0.59 16 29 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.15 1.92 6.30 -2.91 -0.02 1.91 16 31 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 32 H 0.14 1.99 8.02 -2.91 -0.02 1.97 16 33 H 0.07 1.68 7.68 -2.39 -0.02 1.66 16 34 H 0.10 1.48 8.10 -2.39 -0.02 1.47 16 35 H 0.42 8.20 8.55 -96.74 -0.83 7.38 16 36 H 0.14 4.37 8.14 -2.39 -0.02 4.35 16 37 H 0.14 4.47 8.14 -2.39 -0.02 4.45 16 38 H 0.03 1.46 7.20 -2.39 -0.02 1.44 16 39 H 0.03 1.37 7.57 -2.38 -0.02 1.35 16 40 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 41 H 0.11 1.16 8.09 -2.39 -0.02 1.14 16 42 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.13 2.80 8.06 -2.92 -0.02 2.78 16 Total: -1.00 -78.45 389.32 -0.30 -78.75 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: 0.11 Total: 21.23 kcal Atomic # 6 Polarization: -62.07 SS G_CDS: 4.30 Total: -57.77 kcal Atomic # 7 Polarization: -83.08 SS G_CDS: -0.78 Total: -83.86 kcal Atomic # 8 Polarization: -84.26 SS G_CDS: -5.51 Total: -89.77 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.88 Total: 45.88 kcal Atomic # 16 Polarization: 85.84 SS G_CDS: -0.31 Total: 85.53 kcal Total: -78.45 -0.30 -78.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289776952.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.463 kcal (2) G-P(sol) polarization free energy of solvation -78.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds