Wall clock time and date at job start Sat Apr 11 2020 05:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81395 * 109.46986 * 2 1 4 4 O 1.42105 * 110.54530 * 291.62628 * 3 2 1 5 5 O 1.42101 * 110.54333 * 68.37799 * 3 2 1 6 6 C 1.76198 * 104.44778 * 180.02562 * 3 2 1 7 7 C 1.38241 * 119.99959 * 269.72671 * 6 3 2 8 8 C 1.38235 * 120.00053 * 179.76627 * 7 6 3 9 9 C 1.38241 * 119.99599 * 0.48517 * 8 7 6 10 10 C 1.50708 * 119.99682 * 179.76835 * 9 8 7 11 11 H 1.08994 * 109.47163 * 160.02128 * 10 9 8 12 12 C 1.52999 * 109.47160 * 280.02334 * 10 9 8 13 13 N 1.46502 * 109.47017 * 40.02109 * 10 9 8 14 14 C 1.34779 * 119.99675 * 154.99741 * 13 10 9 15 15 O 1.21276 * 119.99998 * 0.02562 * 14 13 10 16 16 C 1.50696 * 119.99740 * 179.97438 * 14 13 10 17 17 C 1.53000 * 109.47273 * 180.02562 * 16 14 13 18 18 C 1.50696 * 109.47273 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00363 * 0.02562 * 18 17 16 20 20 C 1.37878 * 119.99740 * 180.02562 * 18 17 16 21 21 N 1.31510 * 120.00297 * 359.97438 * 20 18 17 22 22 Si 1.86809 * 119.99840 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46786 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47273 * 119.99918 * 22 20 18 25 25 H 1.48497 * 109.46512 * 239.99849 * 22 20 18 26 26 C 1.38228 * 120.00295 * 359.78993 * 9 8 7 27 27 C 1.38235 * 120.00275 * 90.00186 * 6 3 2 28 28 H 1.09005 * 109.47285 * 59.99790 * 1 2 3 29 29 H 1.09003 * 109.47612 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47080 * 299.99725 * 1 2 3 31 31 H 1.09003 * 109.46593 * 240.00075 * 2 1 3 32 32 H 1.08994 * 109.46870 * 120.00443 * 2 1 3 33 33 H 1.07996 * 119.99922 * 359.97438 * 7 6 3 34 34 H 1.07992 * 120.00096 * 180.25330 * 8 7 6 35 35 H 1.09003 * 109.47459 * 59.99612 * 12 10 9 36 36 H 1.08997 * 109.47435 * 180.02562 * 12 10 9 37 37 H 1.09004 * 109.46699 * 299.99966 * 12 10 9 38 38 H 0.96999 * 120.00418 * 335.00297 * 13 10 9 39 39 H 1.09002 * 109.47399 * 300.00214 * 16 14 13 40 40 H 1.09005 * 109.47206 * 60.00258 * 16 14 13 41 41 H 1.09002 * 109.47000 * 300.00358 * 17 16 14 42 42 H 1.09005 * 109.46876 * 59.99955 * 17 16 14 43 43 H 0.97002 * 120.00191 * 179.97438 * 21 20 18 44 44 H 1.08005 * 120.00394 * 179.97438 * 26 9 8 45 45 H 1.08001 * 119.99810 * 359.97438 * 27 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 8 1.8385 2.3439 -1.2370 5 8 1.8385 2.3438 1.2370 6 6 3.8898 1.5560 -0.0008 7 6 4.5794 1.5010 1.1961 8 6 5.9560 1.3751 1.1956 9 6 6.6439 1.3143 -0.0019 10 6 8.1452 1.1823 -0.0025 11 1 8.4760 0.8006 -0.9684 12 6 8.7778 2.5528 0.2480 13 7 8.5543 0.2550 1.0552 14 6 9.7226 -0.4095 0.9541 15 8 10.4353 -0.2394 -0.0123 16 6 10.1437 -1.3630 2.0425 17 6 11.4975 -1.9795 1.6847 18 6 11.9189 -2.9325 2.7734 19 1 11.2844 -3.0837 3.6342 20 6 13.1146 -3.6114 2.6705 21 7 13.8870 -3.4276 1.6221 22 14 13.6366 -4.7933 4.0196 23 1 12.5992 -4.8213 5.0818 24 1 13.7990 -6.1548 3.4495 25 1 14.9270 -4.3426 4.6003 26 6 5.9550 1.3750 -1.1987 27 6 4.5779 1.4957 -1.1982 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 4.0423 1.5530 2.1316 34 1 6.4943 1.3280 2.1306 35 1 8.4470 2.9346 1.2138 36 1 9.8636 2.4574 0.2471 37 1 8.4733 3.2427 -0.5391 38 1 7.9845 0.1191 1.8283 39 1 10.2285 -0.8232 2.9857 40 1 9.3991 -2.1529 2.1416 41 1 11.4131 -2.5191 0.7414 42 1 12.2418 -1.1893 1.5859 43 1 14.7283 -3.9050 1.5499 44 1 6.4925 1.3280 -2.1343 45 1 4.0395 1.5427 -2.1333 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291459586.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:53 Heat of formation + Delta-G solvation = -98.075333 kcal Electronic energy + Delta-G solvation = -26200.193865 eV Core-core repulsion = 22309.491334 eV Total energy + Delta-G solvation = -3890.702531 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.29808 -38.95949 -37.50536 -36.35864 -35.63359 -33.70934 -33.49409 -32.12229 -31.44316 -30.87614 -29.51519 -25.86742 -24.92848 -24.14286 -23.42494 -22.13790 -20.78779 -19.78664 -19.39490 -18.37076 -17.17799 -16.80711 -16.64554 -16.30290 -15.90770 -15.39156 -15.07263 -14.99910 -14.69071 -14.50366 -14.39999 -14.00659 -13.90550 -13.78577 -13.32155 -13.09538 -13.03550 -12.90410 -12.48604 -12.39328 -12.30090 -12.12364 -12.11695 -12.08781 -11.73185 -11.38084 -11.20208 -11.17005 -10.97566 -10.86030 -10.61078 -10.01093 -9.72011 -9.64873 -9.45558 -9.22107 -9.05280 -8.95516 -8.35903 -5.99688 -4.04180 -0.40650 0.37967 0.89160 2.43921 2.94509 3.15959 3.29915 3.36263 3.39019 3.42013 3.50433 3.65556 4.05771 4.16749 4.21186 4.40020 4.44452 4.48038 4.63433 4.87663 4.92266 5.04868 5.07509 5.13017 5.14353 5.30416 5.35432 5.36879 5.41640 5.50405 5.56717 5.64852 5.71877 5.79434 6.03867 6.11483 6.16912 6.18182 6.40161 6.61258 6.83296 7.70506 7.75941 7.81523 8.02974 8.34432 8.68016 9.04422 9.59619 11.11228 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019161 B = 0.001965 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.944541 B =14243.102705 C =15087.796257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.608 4.608 3 S 2.497 3.503 4 O -0.937 6.937 5 O -0.937 6.937 6 C -0.666 4.666 7 C -0.020 4.020 8 C -0.135 4.135 9 C -0.028 4.028 10 C 0.172 3.828 11 H 0.100 0.900 12 C -0.158 4.158 13 N -0.741 5.741 14 C 0.512 3.488 15 O -0.531 6.531 16 C -0.130 4.130 17 C 0.037 3.963 18 C -0.527 4.527 19 H 0.056 0.944 20 C 0.057 3.943 21 N -0.889 5.889 22 Si 0.893 3.107 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 C -0.129 4.129 27 C -0.020 4.020 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.143 0.857 34 H 0.135 0.865 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.397 0.603 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.023 0.977 42 H 0.024 0.976 43 H 0.260 0.740 44 H 0.137 0.863 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.465 10.159 -3.493 29.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.738 4.738 3 S 2.677 3.323 4 O -0.935 6.935 5 O -0.934 6.934 6 C -0.753 4.753 7 C -0.038 4.038 8 C -0.154 4.154 9 C -0.028 4.028 10 C 0.067 3.933 11 H 0.118 0.882 12 C -0.217 4.217 13 N -0.396 5.396 14 C 0.301 3.699 15 O -0.406 6.406 16 C -0.170 4.170 17 C -0.001 4.001 18 C -0.565 4.565 19 H 0.074 0.926 20 C -0.144 4.144 21 N -0.528 5.528 22 Si 0.721 3.279 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.149 4.149 27 C -0.039 4.039 28 H 0.093 0.907 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.155 0.845 32 H 0.155 0.845 33 H 0.161 0.839 34 H 0.152 0.848 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.232 0.768 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.042 0.958 42 H 0.042 0.958 43 H 0.070 0.930 44 H 0.155 0.845 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -27.200 10.978 -4.284 29.643 hybrid contribution 0.786 -1.431 1.078 1.957 sum -26.415 9.546 -3.206 28.269 Atomic orbital electron populations 1.21574 0.90205 1.05399 1.03732 1.30199 1.07153 1.24101 1.12334 1.05450 0.74393 0.77695 0.74766 1.93575 1.83397 1.72006 1.44482 1.93577 1.83376 1.71999 1.44454 1.30490 1.25597 1.19613 0.99594 1.20927 0.94646 0.91609 0.96661 1.21120 0.94244 1.01819 0.98197 1.20444 0.95620 0.93018 0.93750 1.19860 0.88157 0.91097 0.94142 0.88176 1.22174 1.02327 0.95141 1.02042 1.46387 1.23428 1.45704 1.24068 1.21605 0.79461 0.80183 0.88636 1.90672 1.52287 1.64547 1.33097 1.21882 1.02777 0.96671 0.95664 1.18904 0.88525 0.95599 0.97036 1.21249 1.04667 1.24764 1.05858 0.92553 1.25033 0.96629 0.97023 0.95753 1.70003 1.12092 1.42293 1.28396 0.86532 0.78534 0.80877 0.81987 1.19757 1.21007 1.21005 1.21198 0.94150 1.01365 0.98140 1.20932 0.94670 0.91681 0.96632 0.90736 0.89610 0.90710 0.84534 0.84496 0.83907 0.84763 0.92206 0.90857 0.91662 0.76845 0.90152 0.90217 0.95830 0.95792 0.92978 0.84527 0.83928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.58 9.92 37.16 0.37 -0.21 16 2 C -0.61 -2.40 6.70 37.16 0.25 -2.15 16 3 S 2.50 18.49 5.16 -107.50 -0.55 17.94 16 4 O -0.94 -9.60 17.12 -57.54 -0.99 -10.58 16 5 O -0.94 -9.61 17.12 -57.54 -0.99 -10.60 16 6 C -0.67 -5.46 5.66 -39.58 -0.22 -5.68 16 7 C -0.02 -0.16 9.47 -39.58 -0.37 -0.54 16 8 C -0.13 -1.16 9.06 -39.58 -0.36 -1.52 16 9 C -0.03 -0.27 4.95 -104.62 -0.52 -0.79 16 10 C 0.17 2.01 2.78 -69.08 -0.19 1.82 16 11 H 0.10 1.32 7.44 -51.93 -0.39 0.93 16 12 C -0.16 -1.75 9.46 37.16 0.35 -1.40 16 13 N -0.74 -9.64 5.03 -54.93 -0.28 -9.92 16 14 C 0.51 9.33 7.79 -10.99 -0.09 9.24 16 15 O -0.53 -11.93 15.64 5.56 0.09 -11.84 16 16 C -0.13 -2.54 5.64 -27.88 -0.16 -2.69 16 17 C 0.04 0.97 4.26 -27.88 -0.12 0.85 16 18 C -0.53 -14.74 9.11 -34.44 -0.31 -15.05 16 19 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -27.15 13.29 55.43 0.74 -26.42 16 22 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 23 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 26 C -0.13 -1.15 9.67 -39.59 -0.38 -1.53 16 27 C -0.02 -0.17 9.47 -39.58 -0.37 -0.54 16 28 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.14 0.33 8.14 -51.92 -0.42 -0.10 16 32 H 0.14 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.14 0.91 7.57 -52.49 -0.40 0.51 16 34 H 0.13 0.93 6.92 -52.49 -0.36 0.57 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.40 4.02 6.87 -40.82 -0.28 3.74 16 39 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 41 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 42 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 43 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.14 1.00 8.04 -52.48 -0.42 0.58 16 45 H 0.14 0.92 7.57 -52.49 -0.40 0.52 16 LS Contribution 391.69 15.07 5.90 5.90 Total: -1.00 -38.43 391.69 -10.18 -48.61 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -6.86 Total: -0.88 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: -2.23 Total: -18.63 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.46 Total: -36.33 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -1.88 Total: -33.02 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 18.49 SS G_CDS: -0.55 Total: 17.94 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -38.43 -10.18 -48.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291459586.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.464 kcal (2) G-P(sol) polarization free energy of solvation -38.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds