Wall clock time and date at job start Sat Apr 11 2020 05:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81395 * 109.46986 * 2 1 4 4 O 1.42105 * 110.54530 * 291.62628 * 3 2 1 5 5 O 1.42101 * 110.54333 * 68.37799 * 3 2 1 6 6 C 1.76198 * 104.44778 * 180.02562 * 3 2 1 7 7 C 1.38241 * 119.99959 * 269.72671 * 6 3 2 8 8 C 1.38235 * 120.00053 * 179.76627 * 7 6 3 9 9 C 1.38241 * 119.99599 * 0.48517 * 8 7 6 10 10 C 1.50708 * 119.99682 * 179.76835 * 9 8 7 11 11 H 1.08994 * 109.47163 * 160.02128 * 10 9 8 12 12 C 1.52999 * 109.47160 * 280.02334 * 10 9 8 13 13 N 1.46502 * 109.47017 * 40.02109 * 10 9 8 14 14 C 1.34779 * 119.99675 * 154.99741 * 13 10 9 15 15 O 1.21276 * 119.99998 * 0.02562 * 14 13 10 16 16 C 1.50696 * 119.99740 * 179.97438 * 14 13 10 17 17 C 1.53000 * 109.47273 * 180.02562 * 16 14 13 18 18 C 1.50696 * 109.47273 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00363 * 0.02562 * 18 17 16 20 20 C 1.37878 * 119.99740 * 180.02562 * 18 17 16 21 21 N 1.31510 * 120.00297 * 359.97438 * 20 18 17 22 22 Si 1.86809 * 119.99840 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46786 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47273 * 119.99918 * 22 20 18 25 25 H 1.48497 * 109.46512 * 239.99849 * 22 20 18 26 26 C 1.38228 * 120.00295 * 359.78993 * 9 8 7 27 27 C 1.38235 * 120.00275 * 90.00186 * 6 3 2 28 28 H 1.09005 * 109.47285 * 59.99790 * 1 2 3 29 29 H 1.09003 * 109.47612 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47080 * 299.99725 * 1 2 3 31 31 H 1.09003 * 109.46593 * 240.00075 * 2 1 3 32 32 H 1.08994 * 109.46870 * 120.00443 * 2 1 3 33 33 H 1.07996 * 119.99922 * 359.97438 * 7 6 3 34 34 H 1.07992 * 120.00096 * 180.25330 * 8 7 6 35 35 H 1.09003 * 109.47459 * 59.99612 * 12 10 9 36 36 H 1.08997 * 109.47435 * 180.02562 * 12 10 9 37 37 H 1.09004 * 109.46699 * 299.99966 * 12 10 9 38 38 H 0.96999 * 120.00418 * 335.00297 * 13 10 9 39 39 H 1.09002 * 109.47399 * 300.00214 * 16 14 13 40 40 H 1.09005 * 109.47206 * 60.00258 * 16 14 13 41 41 H 1.09002 * 109.47000 * 300.00358 * 17 16 14 42 42 H 1.09005 * 109.46876 * 59.99955 * 17 16 14 43 43 H 0.97002 * 120.00191 * 179.97438 * 21 20 18 44 44 H 1.08005 * 120.00394 * 179.97438 * 26 9 8 45 45 H 1.08001 * 119.99810 * 359.97438 * 27 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 8 1.8385 2.3439 -1.2370 5 8 1.8385 2.3438 1.2370 6 6 3.8898 1.5560 -0.0008 7 6 4.5794 1.5010 1.1961 8 6 5.9560 1.3751 1.1956 9 6 6.6439 1.3143 -0.0019 10 6 8.1452 1.1823 -0.0025 11 1 8.4760 0.8006 -0.9684 12 6 8.7778 2.5528 0.2480 13 7 8.5543 0.2550 1.0552 14 6 9.7226 -0.4095 0.9541 15 8 10.4353 -0.2394 -0.0123 16 6 10.1437 -1.3630 2.0425 17 6 11.4975 -1.9795 1.6847 18 6 11.9189 -2.9325 2.7734 19 1 11.2844 -3.0837 3.6342 20 6 13.1146 -3.6114 2.6705 21 7 13.8870 -3.4276 1.6221 22 14 13.6366 -4.7933 4.0196 23 1 12.5992 -4.8213 5.0818 24 1 13.7990 -6.1548 3.4495 25 1 14.9270 -4.3426 4.6003 26 6 5.9550 1.3750 -1.1987 27 6 4.5779 1.4957 -1.1982 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 4.0423 1.5530 2.1316 34 1 6.4943 1.3280 2.1306 35 1 8.4470 2.9346 1.2138 36 1 9.8636 2.4574 0.2471 37 1 8.4733 3.2427 -0.5391 38 1 7.9845 0.1191 1.8283 39 1 10.2285 -0.8232 2.9857 40 1 9.3991 -2.1529 2.1416 41 1 11.4131 -2.5191 0.7414 42 1 12.2418 -1.1893 1.5859 43 1 14.7283 -3.9050 1.5499 44 1 6.4925 1.3280 -2.1343 45 1 4.0395 1.5427 -2.1333 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291459586.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:52 Heat of formation + Delta-G solvation = -125.774789 kcal Electronic energy + Delta-G solvation = -26201.395004 eV Core-core repulsion = 22309.491334 eV Total energy + Delta-G solvation = -3891.903670 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.27397 -40.11044 -38.16971 -37.04396 -36.73114 -35.54225 -34.01583 -33.44170 -32.51494 -32.05755 -30.47354 -27.73406 -25.64349 -24.75549 -24.19493 -23.61226 -21.91954 -21.17399 -19.99646 -19.08504 -18.78314 -17.76743 -17.56977 -17.22609 -16.96134 -16.51546 -16.40730 -16.20402 -15.72561 -15.40993 -15.14654 -14.92447 -14.71808 -14.50174 -14.29103 -14.24728 -14.17888 -13.72769 -13.50049 -13.36320 -13.23131 -13.18175 -13.07584 -13.02638 -12.84732 -12.48852 -12.42362 -12.37103 -12.14819 -11.92355 -11.83258 -11.63698 -11.38503 -11.28229 -10.79172 -10.58202 -10.34526 -10.11215 -10.07488 -8.18203 -6.31941 -0.93523 -0.29841 0.25139 1.42490 1.43597 1.56827 1.69549 1.88355 2.11816 2.39322 2.45919 2.94665 3.13923 3.15068 3.37811 3.68594 3.74166 3.89285 3.92694 4.00678 4.16543 4.20174 4.30841 4.41600 4.42220 4.50096 4.56434 4.62426 4.64836 4.75833 4.81542 4.88176 4.92966 5.01976 5.03361 5.08839 5.15531 5.16825 5.29101 5.48580 5.54194 5.63782 5.75812 5.85859 6.17780 6.55395 6.87031 7.31375 7.38477 8.94541 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019161 B = 0.001965 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.944541 B =14243.102705 C =15087.796257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.584 4.584 3 S 2.499 3.501 4 O -0.973 6.973 5 O -0.971 6.971 6 C -0.666 4.666 7 C -0.026 4.026 8 C -0.137 4.137 9 C -0.039 4.039 10 C 0.174 3.826 11 H 0.081 0.919 12 C -0.155 4.155 13 N -0.715 5.715 14 C 0.516 3.484 15 O -0.584 6.584 16 C -0.120 4.120 17 C 0.042 3.958 18 C -0.541 4.541 19 H 0.076 0.924 20 C -0.008 4.008 21 N -0.938 5.938 22 Si 0.973 3.027 23 H -0.252 1.252 24 H -0.281 1.281 25 H -0.282 1.282 26 C -0.137 4.137 27 C -0.028 4.028 28 H 0.074 0.926 29 H 0.105 0.895 30 H 0.075 0.925 31 H 0.159 0.841 32 H 0.160 0.840 33 H 0.161 0.839 34 H 0.152 0.848 35 H 0.074 0.926 36 H 0.044 0.956 37 H 0.080 0.920 38 H 0.415 0.585 39 H 0.106 0.894 40 H 0.105 0.895 41 H -0.018 1.018 42 H -0.018 1.018 43 H 0.262 0.738 44 H 0.145 0.855 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.946 9.155 -1.476 31.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.717 4.717 3 S 2.683 3.317 4 O -0.970 6.970 5 O -0.968 6.968 6 C -0.752 4.752 7 C -0.045 4.045 8 C -0.156 4.156 9 C -0.040 4.040 10 C 0.070 3.930 11 H 0.099 0.901 12 C -0.213 4.213 13 N -0.370 5.370 14 C 0.304 3.696 15 O -0.463 6.463 16 C -0.160 4.160 17 C 0.004 3.996 18 C -0.579 4.579 19 H 0.095 0.905 20 C -0.206 4.206 21 N -0.578 5.578 22 Si 0.797 3.203 23 H -0.175 1.175 24 H -0.207 1.207 25 H -0.208 1.208 26 C -0.156 4.156 27 C -0.047 4.047 28 H 0.093 0.907 29 H 0.123 0.877 30 H 0.094 0.906 31 H 0.177 0.823 32 H 0.178 0.822 33 H 0.178 0.822 34 H 0.170 0.830 35 H 0.093 0.907 36 H 0.064 0.936 37 H 0.099 0.901 38 H 0.253 0.747 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.001 0.999 42 H 0.001 0.999 43 H 0.071 0.929 44 H 0.163 0.837 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -29.733 10.035 -2.233 31.460 hybrid contribution 1.440 -1.110 0.400 1.862 sum -28.293 8.925 -1.833 29.724 Atomic orbital electron populations 1.21774 0.89921 1.06695 1.04014 1.30035 1.07228 1.19815 1.14670 1.05306 0.73806 0.79291 0.73303 1.93528 1.83651 1.74335 1.45503 1.93530 1.83609 1.74292 1.45389 1.30641 1.26081 1.18802 0.99682 1.21195 0.94606 0.91260 0.97424 1.21322 0.94606 1.01260 0.98372 1.20244 0.94016 0.94971 0.94742 1.19857 0.89866 0.90704 0.92592 0.90085 1.22128 1.00413 0.95192 1.03554 1.46059 1.21679 1.44384 1.24876 1.21312 0.80433 0.80291 0.87534 1.90662 1.54313 1.66383 1.34954 1.21650 0.99488 0.97823 0.96998 1.18693 0.91518 0.94193 0.95198 1.21749 1.05039 1.24596 1.06497 0.90541 1.26143 0.96813 0.99194 0.98434 1.70180 1.12738 1.43837 1.31022 0.85279 0.78389 0.77824 0.78776 1.17546 1.20684 1.20751 1.21375 0.94623 1.01182 0.98392 1.21152 0.94494 0.91540 0.97470 0.90659 0.87656 0.90577 0.82345 0.82182 0.82175 0.83044 0.90682 0.93638 0.90093 0.74696 0.87618 0.87692 0.99933 0.99917 0.92897 0.83682 0.82500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.81 9.92 71.98 0.71 -0.10 16 2 C -0.58 -2.75 6.70 71.98 0.48 -2.27 16 3 S 2.50 33.34 5.16 -56.49 -0.29 33.05 16 4 O -0.97 -19.28 17.12 -127.65 -2.19 -21.47 16 5 O -0.97 -18.93 17.12 -127.65 -2.19 -21.12 16 6 C -0.67 -9.68 5.66 22.27 0.13 -9.56 16 7 C -0.03 -0.37 9.47 22.27 0.21 -0.16 16 8 C -0.14 -2.03 9.06 22.27 0.20 -1.83 16 9 C -0.04 -0.70 4.95 -19.86 -0.10 -0.80 16 10 C 0.17 3.97 2.78 44.25 0.12 4.09 16 11 H 0.08 2.19 7.44 -2.39 -0.02 2.17 16 12 C -0.15 -3.34 9.46 71.98 0.68 -2.66 16 13 N -0.72 -17.77 5.03 -446.09 -2.24 -20.01 16 14 C 0.52 18.89 7.79 87.66 0.68 19.57 16 15 O -0.58 -27.51 15.64 -3.02 -0.05 -27.55 16 16 C -0.12 -4.60 5.64 29.85 0.17 -4.43 16 17 C 0.04 2.27 4.26 29.85 0.13 2.40 16 18 C -0.54 -30.28 9.11 25.60 0.23 -30.05 16 19 H 0.08 3.88 7.74 -2.91 -0.02 3.86 16 20 C -0.01 -0.49 5.46 84.66 0.46 -0.03 16 21 N -0.94 -59.06 13.29 21.45 0.28 -58.77 16 22 Si 0.97 43.78 29.54 68.60 2.03 45.81 16 23 H -0.25 -10.40 7.11 99.48 0.71 -9.69 16 24 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 25 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 26 C -0.14 -2.27 9.67 22.27 0.22 -2.05 16 27 C -0.03 -0.42 9.47 22.27 0.21 -0.21 16 28 H 0.07 0.37 8.14 -2.38 -0.02 0.35 16 29 H 0.10 0.17 8.14 -2.39 -0.02 0.16 16 30 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.16 0.15 8.14 -2.39 -0.02 0.13 16 32 H 0.16 0.11 8.14 -2.39 -0.02 0.09 16 33 H 0.16 1.63 7.57 -2.91 -0.02 1.61 16 34 H 0.15 1.61 6.92 -2.91 -0.02 1.59 16 35 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.41 7.31 6.87 -92.71 -0.64 6.67 16 39 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 40 H 0.10 3.50 8.14 -2.38 -0.02 3.48 16 41 H -0.02 -1.10 8.10 -2.39 -0.02 -1.12 16 42 H -0.02 -1.09 8.10 -2.38 -0.02 -1.11 16 43 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 44 H 0.15 2.04 8.04 -2.91 -0.02 2.02 16 45 H 0.16 1.81 7.57 -2.91 -0.02 1.79 16 Total: -1.00 -87.33 391.69 0.25 -87.08 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: 0.35 Total: 11.05 kcal Atomic # 6 Polarization: -32.61 SS G_CDS: 4.54 Total: -28.07 kcal Atomic # 7 Polarization: -76.83 SS G_CDS: -1.96 Total: -78.78 kcal Atomic # 8 Polarization: -65.72 SS G_CDS: -4.42 Total: -70.13 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: 33.34 SS G_CDS: -0.29 Total: 33.05 kcal Total: -87.33 0.25 -87.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291459586.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.695 kcal (2) G-P(sol) polarization free energy of solvation -87.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds