Wall clock time and date at job start Sat Apr 11 2020 05:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47520 * 2 1 4 4 O 1.42899 * 109.47242 * 120.01005 * 2 1 3 5 5 C 1.53011 * 109.46756 * 240.00440 * 2 1 3 6 6 H 1.09002 * 109.49457 * 59.93785 * 5 2 1 7 7 C 1.53040 * 109.52351 * 299.85662 * 5 2 1 8 8 C 1.53040 * 109.53736 * 178.66580 * 7 5 2 9 9 C 1.52765 * 109.38254 * 61.24103 * 8 7 5 10 10 N 1.46933 * 109.00632 * 305.59080 * 9 8 7 11 11 S 1.65602 * 120.62568 * 233.58489 * 10 9 8 12 12 O 1.42099 * 106.40025 * 156.17758 * 11 10 9 13 13 O 1.42101 * 106.40333 * 23.25752 * 11 10 9 14 14 C 1.76201 * 107.21921 * 269.71675 * 11 10 9 15 15 C 1.38631 * 119.74840 * 89.99863 * 14 11 10 16 16 C 1.37621 * 120.25052 * 180.02562 * 15 14 11 17 17 C 1.40711 * 119.74189 * 0.02562 * 16 15 14 18 18 C 1.41398 * 120.24397 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99630 * 335.08421 * 18 17 16 20 20 C 1.39943 * 120.00161 * 155.36018 * 18 17 16 21 21 N 1.30826 * 120.00072 * 341.83072 * 20 18 17 22 22 Si 1.86807 * 120.00001 * 161.82285 * 20 18 17 23 23 H 1.48495 * 109.46894 * 94.53330 * 22 20 18 24 24 H 1.48502 * 109.46836 * 214.52986 * 22 20 18 25 25 H 1.48491 * 109.47097 * 334.53351 * 22 20 18 26 26 C 1.40716 * 119.51471 * 0.27190 * 17 16 15 27 27 C 1.37624 * 119.74129 * 359.43098 * 26 17 16 28 28 C 1.46921 * 118.74134 * 53.30486 * 10 9 8 29 29 H 1.08989 * 109.47559 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46616 * 300.00065 * 1 2 3 31 31 H 1.09003 * 109.47268 * 59.99105 * 1 2 3 32 32 H 0.96698 * 114.00356 * 59.99057 * 4 2 1 33 33 H 1.08998 * 109.45741 * 298.68592 * 7 5 2 34 34 H 1.08996 * 109.45902 * 58.66323 * 7 5 2 35 35 H 1.08994 * 109.49729 * 181.31755 * 8 7 5 36 36 H 1.08999 * 109.49871 * 301.38360 * 8 7 5 37 37 H 1.09000 * 109.51190 * 185.70768 * 9 8 7 38 38 H 1.08999 * 109.43294 * 65.42244 * 9 8 7 39 39 H 1.08000 * 119.87739 * 359.97438 * 15 14 11 40 40 H 1.08001 * 120.13139 * 180.02562 * 16 15 14 41 41 H 0.96998 * 120.00159 * 179.97438 * 21 20 18 42 42 H 1.08002 * 120.12837 * 179.69890 * 26 17 16 43 43 H 1.07997 * 119.87594 * 180.27156 * 27 26 17 44 44 H 1.09000 * 109.58133 * 66.43498 * 28 10 9 45 45 H 1.09006 * 109.58672 * 186.85648 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6738 1.1666 5 6 2.0399 -0.7212 -1.2494 6 1 1.6759 -0.2082 -2.1396 7 6 1.5334 -2.1654 -1.2489 8 6 2.0156 -2.8773 -2.5149 9 6 3.5430 -2.9003 -2.5330 10 7 4.0440 -1.5271 -2.3844 11 16 5.1153 -0.8969 -3.4788 12 8 4.9716 0.5153 -3.4134 13 8 4.9477 -1.6404 -4.6782 14 6 6.7361 -1.2599 -2.8907 15 6 7.3573 -2.4398 -3.2701 16 6 8.6228 -2.7339 -2.8164 17 6 9.2859 -1.8320 -1.9638 18 6 10.5866 -2.1234 -1.4918 19 1 10.9209 -3.1484 -1.4282 20 6 11.4386 -1.0840 -1.1017 21 7 11.1964 0.1413 -1.4909 22 14 12.9216 -1.4461 -0.0250 23 1 14.1185 -1.6436 -0.8814 24 1 13.1548 -0.3050 0.8962 25 1 12.6701 -2.6775 0.7659 26 6 8.6432 -0.6405 -1.5803 27 6 7.3799 -0.3641 -2.0511 28 6 3.5718 -0.7216 -1.2501 29 1 -0.3634 -1.0275 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5140 -0.8899 32 1 1.7210 -1.5954 1.2327 33 1 1.9181 -2.6848 -0.3712 34 1 0.4437 -2.1679 -1.2239 35 1 1.6350 -3.8986 -2.5252 36 1 1.6513 -2.3444 -3.3932 37 1 3.8896 -3.3154 -3.4794 38 1 3.9063 -3.5131 -1.7080 39 1 6.8459 -3.1311 -3.9235 40 1 9.1051 -3.6535 -3.1135 41 1 11.7867 0.8618 -1.2202 42 1 9.1411 0.0565 -0.9224 43 1 6.8863 0.5518 -1.7616 44 1 3.9375 -1.1531 -0.3183 45 1 3.9375 0.3004 -1.3502 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305218125.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:19 Heat of formation + Delta-G solvation = -126.609710 kcal Electronic energy + Delta-G solvation = -28076.470170 eV Core-core repulsion = 24184.530295 eV Total energy + Delta-G solvation = -3891.939875 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -39.50107 -37.55415 -36.72724 -36.51679 -35.12502 -34.02115 -32.66983 -31.63794 -30.23985 -29.48942 -29.41457 -25.80062 -24.97835 -23.63603 -21.93255 -21.43806 -21.11295 -19.96645 -18.38170 -17.61918 -17.33519 -16.70290 -16.36650 -15.72701 -15.60545 -15.40116 -14.74606 -14.53858 -14.28328 -14.12856 -13.64162 -13.49406 -13.33059 -13.18584 -12.94566 -12.43219 -12.38118 -12.19186 -12.17554 -11.87934 -11.73342 -11.48639 -11.44847 -11.37415 -11.31503 -11.21027 -11.03233 -10.91682 -10.85872 -10.79080 -10.44174 -10.30263 -10.03284 -9.73975 -9.59373 -9.46480 -8.63032 -7.93237 -7.69141 -7.12842 -4.78288 1.19848 2.27427 2.87923 2.90180 2.93618 2.96785 3.59762 3.67843 4.19909 4.26066 4.50210 4.50601 4.59186 4.75493 4.89795 5.01033 5.07085 5.14119 5.29971 5.31589 5.41443 5.43914 5.45939 5.58095 5.73178 5.80059 5.82277 5.83745 5.92686 6.04656 6.06766 6.07775 6.13290 6.28924 6.39585 6.67730 6.70360 6.83102 7.01545 7.06805 7.35380 7.43677 7.49327 7.64501 7.77954 7.98221 8.33142 8.52568 8.66423 9.79169 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015958 B = 0.003181 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.218278 B = 8801.473858 C = 9555.163142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.107 3.893 3 H 0.102 0.898 4 O -0.559 6.559 5 C -0.133 4.133 6 H 0.083 0.917 7 C -0.117 4.117 8 C -0.130 4.130 9 C 0.120 3.880 10 N -1.004 6.004 11 S 2.691 3.309 12 O -0.982 6.982 13 O -0.984 6.984 14 C -0.787 4.787 15 C 0.001 3.999 16 C -0.239 4.239 17 C 0.140 3.860 18 C -0.436 4.436 19 H 0.087 0.913 20 C 0.072 3.928 21 N -0.765 5.765 22 Si 0.916 3.084 23 H -0.266 1.266 24 H -0.271 1.271 25 H -0.257 1.257 26 C -0.183 4.183 27 C -0.015 4.015 28 C 0.129 3.871 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.371 0.629 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.091 0.909 38 H 0.065 0.935 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.289 0.711 42 H 0.121 0.879 43 H 0.102 0.898 44 H 0.074 0.926 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.610 -3.335 4.188 16.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.047 3.953 3 H 0.120 0.880 4 O -0.365 6.365 5 C -0.154 4.154 6 H 0.101 0.899 7 C -0.155 4.155 8 C -0.169 4.169 9 C -0.006 4.006 10 N -0.839 5.839 11 S 2.792 3.208 12 O -0.972 6.972 13 O -0.975 6.975 14 C -0.883 4.883 15 C -0.019 4.019 16 C -0.259 4.259 17 C 0.136 3.864 18 C -0.464 4.464 19 H 0.105 0.895 20 C -0.150 4.150 21 N -0.387 5.387 22 Si 0.739 3.261 23 H -0.191 1.191 24 H -0.196 1.196 25 H -0.180 1.180 26 C -0.203 4.203 27 C -0.035 4.035 28 C 0.004 3.996 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.219 0.781 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.110 0.890 38 H 0.084 0.916 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.100 0.900 42 H 0.139 0.861 43 H 0.120 0.880 44 H 0.093 0.907 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.511 -2.040 3.511 16.034 hybrid contribution 0.975 -0.826 0.674 1.445 sum -14.536 -2.867 4.185 15.396 Atomic orbital electron populations 1.22537 0.96527 1.02583 1.02651 1.21909 0.92695 0.96718 0.83987 0.88020 1.86610 1.77184 1.28954 1.43772 1.22215 0.96904 0.96987 0.99284 0.89912 1.21595 1.00196 0.95119 0.98541 1.21776 0.96085 1.00754 0.98277 1.21257 0.93856 0.82661 1.02807 1.57926 1.60638 1.22421 1.42903 1.01315 0.73861 0.72760 0.72870 1.93467 1.87140 1.29875 1.86761 1.93460 1.86997 1.73407 1.43615 1.29205 1.22726 1.08780 1.27558 1.20141 0.94605 0.92973 0.94171 1.21021 0.96993 1.02350 1.05579 1.17843 0.91847 0.90594 0.86067 1.19924 0.97158 0.94765 1.34524 0.89461 1.26142 1.00141 0.94342 0.94375 1.69827 1.35403 1.01275 1.32195 0.86154 0.80048 0.79844 0.80033 1.19119 1.19578 1.18010 1.21317 0.94260 1.00129 1.04587 1.20239 0.95090 0.95066 0.93105 1.21306 0.92815 0.96121 0.89397 0.92035 0.91922 0.91574 0.78113 0.91642 0.91589 0.90892 0.91550 0.89040 0.91631 0.87942 0.88207 0.89950 0.86115 0.87979 0.90726 0.89098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.35 9.19 37.16 0.34 -1.01 16 2 C 0.11 1.00 3.39 -26.73 -0.09 0.91 16 3 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 4 O -0.56 -5.71 12.54 -35.23 -0.44 -6.16 16 5 C -0.13 -1.40 2.23 -90.50 -0.20 -1.60 16 6 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 7 C -0.12 -1.01 4.51 -26.69 -0.12 -1.13 16 8 C -0.13 -1.29 6.06 -26.83 -0.16 -1.45 16 9 C 0.12 1.53 6.45 -3.93 -0.03 1.51 16 10 N -1.00 -15.42 3.30 -113.76 -0.37 -15.80 16 11 S 2.69 53.11 5.72 -107.50 -0.62 52.49 16 12 O -0.98 -21.33 15.85 -57.17 -0.91 -22.24 16 13 O -0.98 -20.95 15.84 -57.17 -0.91 -21.86 16 14 C -0.79 -17.66 6.00 -39.29 -0.24 -17.90 16 15 C 0.00 0.03 9.49 -39.66 -0.38 -0.35 16 16 C -0.24 -5.70 9.80 -38.87 -0.38 -6.08 16 17 C 0.14 3.59 5.57 -106.83 -0.59 2.99 16 18 C -0.44 -10.79 9.05 -37.74 -0.34 -11.13 16 19 H 0.09 2.03 7.91 -52.49 -0.42 1.61 16 20 C 0.07 1.68 5.13 -17.34 -0.09 1.60 16 21 N -0.76 -18.55 11.01 55.55 0.61 -17.94 16 22 Si 0.92 17.12 29.60 -169.99 -5.03 12.09 16 23 H -0.27 -4.92 7.11 56.52 0.40 -4.51 16 24 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 25 H -0.26 -4.75 7.11 56.52 0.40 -4.34 16 26 C -0.18 -4.63 8.69 -38.87 -0.34 -4.97 16 27 C -0.01 -0.35 9.49 -39.66 -0.38 -0.72 16 28 C 0.13 1.77 5.68 -3.72 -0.02 1.75 16 29 H 0.06 0.39 6.41 -51.94 -0.33 0.05 16 30 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.37 2.66 7.36 45.56 0.34 2.99 16 33 H 0.06 0.51 6.85 -51.93 -0.36 0.16 16 34 H 0.07 0.47 6.37 -51.93 -0.33 0.13 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.09 1.23 6.91 -51.93 -0.36 0.88 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.10 2.07 7.60 -52.49 -0.40 1.67 16 40 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 41 H 0.29 6.28 8.30 -40.82 -0.34 5.94 16 42 H 0.12 3.09 6.21 -52.49 -0.33 2.77 16 43 H 0.10 2.24 7.60 -52.49 -0.40 1.85 16 44 H 0.07 1.00 7.54 -51.93 -0.39 0.61 16 45 H 0.09 1.35 6.92 -51.93 -0.36 0.99 16 LS Contribution 366.92 15.07 5.53 5.53 Total: -1.00 -30.57 366.92 -11.00 -41.56 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -5.85 Total: 9.91 kcal Atomic # 6 Polarization: -34.59 SS G_CDS: -3.01 Total: -37.60 kcal Atomic # 7 Polarization: -33.98 SS G_CDS: 0.24 Total: -33.74 kcal Atomic # 8 Polarization: -47.99 SS G_CDS: -2.25 Total: -50.25 kcal Atomic # 14 Polarization: 17.12 SS G_CDS: -5.03 Total: 12.09 kcal Atomic # 16 Polarization: 53.11 SS G_CDS: -0.62 Total: 52.49 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.57 -11.00 -41.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305218125.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.046 kcal (2) G-P(sol) polarization free energy of solvation -30.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds