Wall clock time and date at job start Sat Apr 11 2020 05:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47520 * 2 1 4 4 O 1.42899 * 109.47242 * 120.01005 * 2 1 3 5 5 C 1.53011 * 109.46756 * 240.00440 * 2 1 3 6 6 H 1.09002 * 109.49457 * 59.93785 * 5 2 1 7 7 C 1.53040 * 109.52351 * 299.85662 * 5 2 1 8 8 C 1.53040 * 109.53736 * 178.66580 * 7 5 2 9 9 C 1.52765 * 109.38254 * 61.24103 * 8 7 5 10 10 N 1.46933 * 109.00632 * 305.59080 * 9 8 7 11 11 S 1.65602 * 120.62568 * 233.58489 * 10 9 8 12 12 O 1.42099 * 106.40025 * 156.17758 * 11 10 9 13 13 O 1.42101 * 106.40333 * 23.25752 * 11 10 9 14 14 C 1.76201 * 107.21921 * 269.71675 * 11 10 9 15 15 C 1.38631 * 119.74840 * 89.99863 * 14 11 10 16 16 C 1.37621 * 120.25052 * 180.02562 * 15 14 11 17 17 C 1.40711 * 119.74189 * 0.02562 * 16 15 14 18 18 C 1.41398 * 120.24397 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99630 * 335.08421 * 18 17 16 20 20 C 1.39943 * 120.00161 * 155.36018 * 18 17 16 21 21 N 1.30826 * 120.00072 * 341.83072 * 20 18 17 22 22 Si 1.86807 * 120.00001 * 161.82285 * 20 18 17 23 23 H 1.48495 * 109.46894 * 94.53330 * 22 20 18 24 24 H 1.48502 * 109.46836 * 214.52986 * 22 20 18 25 25 H 1.48491 * 109.47097 * 334.53351 * 22 20 18 26 26 C 1.40716 * 119.51471 * 0.27190 * 17 16 15 27 27 C 1.37624 * 119.74129 * 359.43098 * 26 17 16 28 28 C 1.46921 * 118.74134 * 53.30486 * 10 9 8 29 29 H 1.08989 * 109.47559 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46616 * 300.00065 * 1 2 3 31 31 H 1.09003 * 109.47268 * 59.99105 * 1 2 3 32 32 H 0.96698 * 114.00356 * 59.99057 * 4 2 1 33 33 H 1.08998 * 109.45741 * 298.68592 * 7 5 2 34 34 H 1.08996 * 109.45902 * 58.66323 * 7 5 2 35 35 H 1.08994 * 109.49729 * 181.31755 * 8 7 5 36 36 H 1.08999 * 109.49871 * 301.38360 * 8 7 5 37 37 H 1.09000 * 109.51190 * 185.70768 * 9 8 7 38 38 H 1.08999 * 109.43294 * 65.42244 * 9 8 7 39 39 H 1.08000 * 119.87739 * 359.97438 * 15 14 11 40 40 H 1.08001 * 120.13139 * 180.02562 * 16 15 14 41 41 H 0.96998 * 120.00159 * 179.97438 * 21 20 18 42 42 H 1.08002 * 120.12837 * 179.69890 * 26 17 16 43 43 H 1.07997 * 119.87594 * 180.27156 * 27 26 17 44 44 H 1.09000 * 109.58133 * 66.43498 * 28 10 9 45 45 H 1.09006 * 109.58672 * 186.85648 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6738 1.1666 5 6 2.0399 -0.7212 -1.2494 6 1 1.6759 -0.2082 -2.1396 7 6 1.5334 -2.1654 -1.2489 8 6 2.0156 -2.8773 -2.5149 9 6 3.5430 -2.9003 -2.5330 10 7 4.0440 -1.5271 -2.3844 11 16 5.1153 -0.8969 -3.4788 12 8 4.9716 0.5153 -3.4134 13 8 4.9477 -1.6404 -4.6782 14 6 6.7361 -1.2599 -2.8907 15 6 7.3573 -2.4398 -3.2701 16 6 8.6228 -2.7339 -2.8164 17 6 9.2859 -1.8320 -1.9638 18 6 10.5866 -2.1234 -1.4918 19 1 10.9209 -3.1484 -1.4282 20 6 11.4386 -1.0840 -1.1017 21 7 11.1964 0.1413 -1.4909 22 14 12.9216 -1.4461 -0.0250 23 1 14.1185 -1.6436 -0.8814 24 1 13.1548 -0.3050 0.8962 25 1 12.6701 -2.6775 0.7659 26 6 8.6432 -0.6405 -1.5803 27 6 7.3799 -0.3641 -2.0511 28 6 3.5718 -0.7216 -1.2501 29 1 -0.3634 -1.0275 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5140 -0.8899 32 1 1.7210 -1.5954 1.2327 33 1 1.9181 -2.6848 -0.3712 34 1 0.4437 -2.1679 -1.2239 35 1 1.6350 -3.8986 -2.5252 36 1 1.6513 -2.3444 -3.3932 37 1 3.8896 -3.3154 -3.4794 38 1 3.9063 -3.5131 -1.7080 39 1 6.8459 -3.1311 -3.9235 40 1 9.1051 -3.6535 -3.1135 41 1 11.7867 0.8618 -1.2202 42 1 9.1411 0.0565 -0.9224 43 1 6.8863 0.5518 -1.7616 44 1 3.9375 -1.1531 -0.3183 45 1 3.9375 0.3004 -1.3502 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305218125.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:18 Heat of formation + Delta-G solvation = -147.165694 kcal Electronic energy + Delta-G solvation = -28077.361544 eV Core-core repulsion = 24184.530295 eV Total energy + Delta-G solvation = -3892.831249 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.36283 -39.39913 -38.25597 -37.57574 -36.81757 -35.81957 -33.58548 -32.53524 -32.08416 -31.32368 -30.21629 -27.63300 -25.88232 -24.57714 -23.32526 -22.96308 -22.75262 -20.85066 -19.80278 -19.44607 -18.73729 -18.24905 -17.36554 -17.24578 -16.88983 -16.41854 -15.88017 -15.74312 -15.59149 -15.27609 -15.14437 -14.96604 -14.66209 -14.31339 -14.13569 -14.02942 -13.82338 -13.55846 -13.24151 -13.12920 -13.08294 -12.99304 -12.95436 -12.88954 -12.73621 -12.57337 -12.34379 -12.04548 -11.91444 -11.77098 -11.64537 -11.57088 -11.34144 -11.21381 -11.15028 -10.82357 -9.89992 -9.73005 -9.57798 -8.88904 -6.66382 -0.37671 0.46613 1.02757 1.34764 1.41233 1.52501 2.09653 2.15681 2.51799 2.89869 3.39688 3.48763 3.58178 3.68102 3.82641 3.96058 4.11131 4.19033 4.26321 4.29366 4.30890 4.46406 4.50938 4.61124 4.62655 4.82921 4.84757 4.90489 4.92543 4.96215 5.00624 5.08004 5.10343 5.15500 5.21864 5.22599 5.34837 5.45028 5.49489 5.49954 5.56769 5.69268 5.78977 5.91423 6.13129 6.46775 6.66210 6.78915 6.91506 8.06921 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015958 B = 0.003181 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.218278 B = 8801.473858 C = 9555.163142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.109 3.891 3 H 0.089 0.911 4 O -0.576 6.576 5 C -0.128 4.128 6 H 0.078 0.922 7 C -0.114 4.114 8 C -0.127 4.127 9 C 0.107 3.893 10 N -0.995 5.995 11 S 2.716 3.284 12 O -1.004 7.004 13 O -0.998 6.998 14 C -0.799 4.799 15 C -0.002 4.002 16 C -0.256 4.256 17 C 0.111 3.889 18 C -0.466 4.466 19 H 0.094 0.906 20 C 0.033 3.967 21 N -0.800 5.800 22 Si 0.993 3.007 23 H -0.259 1.259 24 H -0.264 1.264 25 H -0.252 1.252 26 C -0.207 4.207 27 C -0.022 4.022 28 C 0.122 3.878 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.385 0.615 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.059 0.941 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.126 0.874 40 H 0.114 0.886 41 H 0.298 0.702 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.077 0.923 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.259 -4.730 5.091 18.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.049 3.951 3 H 0.107 0.893 4 O -0.384 6.384 5 C -0.148 4.148 6 H 0.096 0.904 7 C -0.151 4.151 8 C -0.166 4.166 9 C -0.017 4.017 10 N -0.834 5.834 11 S 2.814 3.186 12 O -0.995 6.995 13 O -0.988 6.988 14 C -0.891 4.891 15 C -0.022 4.022 16 C -0.276 4.276 17 C 0.108 3.892 18 C -0.492 4.492 19 H 0.112 0.888 20 C -0.186 4.186 21 N -0.423 5.423 22 Si 0.812 3.188 23 H -0.183 1.183 24 H -0.188 1.188 25 H -0.176 1.176 26 C -0.227 4.227 27 C -0.042 4.042 28 C -0.003 4.003 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.235 0.765 33 H 0.097 0.903 34 H 0.110 0.890 35 H 0.120 0.880 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.144 0.856 40 H 0.132 0.868 41 H 0.110 0.890 42 H 0.127 0.873 43 H 0.128 0.872 44 H 0.095 0.905 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.137 -3.449 4.406 18.028 hybrid contribution 1.359 -0.389 0.359 1.459 sum -15.778 -3.838 4.765 16.923 Atomic orbital electron populations 1.22468 0.94430 1.03757 1.02929 1.21863 0.94196 0.95878 0.83160 0.89342 1.86588 1.77677 1.30193 1.43961 1.22184 0.94059 0.98855 0.99742 0.90360 1.21625 1.01774 0.93294 0.98377 1.21796 0.93447 1.02612 0.98704 1.21607 0.96243 0.80885 1.02993 1.57591 1.59104 1.23929 1.42729 1.00545 0.73118 0.72071 0.72879 1.93433 1.87195 1.31593 1.87246 1.93433 1.86956 1.73588 1.44860 1.29739 1.24907 1.08196 1.26301 1.20442 0.94310 0.93390 0.94020 1.21273 0.97716 1.02870 1.05762 1.18199 0.92866 0.91162 0.86975 1.20236 0.97462 0.95684 1.35857 0.88787 1.27077 1.02942 0.93677 0.94950 1.69869 1.36917 1.02393 1.33083 0.85015 0.75968 0.79809 0.77981 1.18298 1.18771 1.17556 1.21330 0.95098 1.00592 1.05663 1.20417 0.94769 0.95703 0.93303 1.21494 0.95457 0.94817 0.88533 0.90383 0.91868 0.91107 0.76529 0.90331 0.88963 0.88047 0.92246 0.89884 0.90235 0.85628 0.86838 0.89043 0.87325 0.87192 0.90492 0.90982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.10 9.19 71.98 0.66 -1.44 16 2 C 0.11 1.85 3.39 30.60 0.10 1.95 16 3 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 4 O -0.58 -10.67 12.54 -148.98 -1.87 -12.54 16 5 C -0.13 -2.44 2.23 -10.71 -0.02 -2.46 16 6 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 7 C -0.11 -1.55 4.51 30.62 0.14 -1.41 16 8 C -0.13 -2.11 6.06 30.53 0.19 -1.92 16 9 C 0.11 2.53 6.45 86.22 0.56 3.09 16 10 N -1.00 -29.77 3.30 -513.84 -1.69 -31.46 16 11 S 2.72 107.31 5.72 -56.49 -0.32 106.99 16 12 O -1.00 -44.23 15.85 -128.00 -2.03 -46.26 16 13 O -1.00 -42.00 15.84 -128.00 -2.03 -44.03 16 14 C -0.80 -36.45 6.00 22.46 0.13 -36.31 16 15 C 0.00 -0.09 9.49 22.22 0.21 0.13 16 16 C -0.26 -12.46 9.80 22.73 0.22 -12.24 16 17 C 0.11 5.91 5.57 -21.29 -0.12 5.79 16 18 C -0.47 -23.60 9.05 23.46 0.21 -23.39 16 19 H 0.09 4.45 7.91 -2.91 -0.02 4.43 16 20 C 0.03 1.55 5.13 85.26 0.44 1.98 16 21 N -0.80 -39.85 11.01 21.83 0.24 -39.61 16 22 Si 0.99 34.98 29.60 68.60 2.03 37.01 16 23 H -0.26 -8.74 7.11 99.48 0.71 -8.03 16 24 H -0.26 -8.87 7.11 99.48 0.71 -8.16 16 25 H -0.25 -8.62 7.11 99.48 0.71 -7.92 16 26 C -0.21 -10.95 8.69 22.73 0.20 -10.75 16 27 C -0.02 -1.08 9.49 22.22 0.21 -0.86 16 28 C 0.12 3.26 5.68 86.36 0.49 3.75 16 29 H 0.08 0.66 6.41 -2.39 -0.02 0.65 16 30 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.38 4.41 7.36 -74.06 -0.55 3.87 16 33 H 0.08 0.91 6.85 -2.39 -0.02 0.89 16 34 H 0.09 0.85 6.37 -2.39 -0.02 0.84 16 35 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.08 2.11 6.91 -2.39 -0.02 2.10 16 38 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.13 5.01 7.60 -2.91 -0.02 4.99 16 40 H 0.11 5.03 8.06 -2.91 -0.02 5.01 16 41 H 0.30 13.22 8.30 -92.71 -0.77 12.45 16 42 H 0.11 5.88 6.21 -2.91 -0.02 5.87 16 43 H 0.11 5.05 7.60 -2.91 -0.02 5.03 16 44 H 0.08 2.01 7.54 -2.39 -0.02 2.00 16 45 H 0.07 2.19 6.92 -2.38 -0.02 2.17 16 Total: -1.00 -67.61 366.92 -1.59 -69.20 By element: Atomic # 1 Polarization: 34.34 SS G_CDS: 0.46 Total: 34.80 kcal Atomic # 6 Polarization: -77.72 SS G_CDS: 3.62 Total: -74.10 kcal Atomic # 7 Polarization: -69.62 SS G_CDS: -1.45 Total: -71.07 kcal Atomic # 8 Polarization: -96.90 SS G_CDS: -5.93 Total: -102.82 kcal Atomic # 14 Polarization: 34.98 SS G_CDS: 2.03 Total: 37.01 kcal Atomic # 16 Polarization: 107.31 SS G_CDS: -0.32 Total: 106.99 kcal Total: -67.61 -1.59 -69.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305218125.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.970 kcal (2) G-P(sol) polarization free energy of solvation -67.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds