Wall clock time and date at job start Sat Apr 11 2020 05:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00037 * 2 1 4 4 C 1.50704 * 109.46745 * 179.97438 * 3 2 1 5 5 C 1.38235 * 119.99740 * 90.00274 * 4 3 2 6 6 C 1.38228 * 120.00169 * 179.97438 * 5 4 3 7 7 C 1.38232 * 120.00211 * 0.02562 * 6 5 4 8 8 S 1.76198 * 120.00690 * 179.97438 * 7 6 5 9 9 O 1.42107 * 106.39978 * 336.45884 * 8 7 6 10 10 O 1.42095 * 106.40750 * 203.54368 * 8 7 6 11 11 N 1.65594 * 107.21960 * 89.99695 * 8 7 6 12 12 C 1.36943 * 120.00436 * 270.00234 * 11 8 7 13 13 H 1.08005 * 119.99806 * 129.83252 * 12 11 8 14 14 C 1.38809 * 120.00082 * 309.84102 * 12 11 8 15 15 N 1.31625 * 119.99493 * 334.81430 * 14 12 11 16 16 Si 1.86797 * 120.00135 * 154.81793 * 14 12 11 17 17 H 1.48492 * 109.47608 * 59.99683 * 16 14 12 18 18 H 1.48506 * 109.46921 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47251 * 299.99218 * 16 14 12 20 20 C 1.46500 * 119.99903 * 90.00210 * 11 8 7 21 21 C 1.54967 * 110.92109 * 127.94244 * 20 11 8 22 22 C 1.54270 * 104.15958 * 156.30133 * 21 20 11 23 23 C 1.53874 * 106.63765 * 336.44010 * 22 21 20 24 24 C 1.54268 * 106.59831 * 359.97438 * 23 22 21 25 25 C 1.38241 * 119.99832 * 0.25064 * 7 6 5 26 26 C 1.38231 * 120.00206 * 270.02342 * 4 3 2 27 27 H 1.09008 * 109.46551 * 59.99910 * 1 2 3 28 28 H 1.08998 * 109.47246 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47193 * 300.00209 * 1 2 3 30 30 H 1.09001 * 109.46936 * 60.00258 * 3 2 1 31 31 H 1.08997 * 109.47479 * 299.99688 * 3 2 1 32 32 H 1.08007 * 120.00247 * 359.97438 * 5 4 3 33 33 H 1.08005 * 120.00304 * 179.97438 * 6 5 4 34 34 H 0.96999 * 119.99285 * 180.02562 * 15 14 12 35 35 H 1.09003 * 110.67014 * 4.63883 * 20 11 8 36 36 H 1.08998 * 110.48032 * 37.64516 * 21 20 11 37 37 H 1.09002 * 110.52772 * 274.97175 * 21 20 11 38 38 H 1.08999 * 110.02877 * 217.13955 * 22 21 20 39 39 H 1.08997 * 110.03471 * 95.75361 * 22 21 20 40 40 H 1.09001 * 110.03064 * 119.26310 * 23 22 21 41 41 H 1.09000 * 110.03670 * 240.64598 * 23 22 21 42 42 H 1.09001 * 110.48618 * 142.29056 * 24 23 22 43 43 H 1.09004 * 110.48471 * 264.79447 * 24 23 22 44 44 H 1.07999 * 120.00299 * 179.72478 * 25 7 6 45 45 H 1.07995 * 120.00201 * 359.97438 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 6 4.2020 1.1315 -1.1963 6 6 5.5800 1.0228 -1.1958 7 6 6.2687 0.9684 0.0016 8 16 8.0251 0.8291 0.0023 9 8 8.3826 0.2544 -1.2472 10 8 8.3817 0.2548 1.2522 11 7 8.6388 2.3671 0.0023 12 6 8.8930 3.0030 -1.1836 13 1 8.5183 4.0019 -1.3520 14 6 9.6322 2.3637 -2.1694 15 7 10.4867 1.4176 -1.8418 16 14 9.4142 2.8459 -3.9608 17 1 9.7538 4.2813 -4.1320 18 1 10.3121 2.0208 -4.8084 19 1 8.0037 2.6192 -4.3664 20 6 8.9098 3.0477 1.2710 21 6 10.3582 3.5975 1.3057 22 6 10.3017 4.7451 2.3351 23 6 8.8365 5.2115 2.3949 24 6 8.0530 4.3316 1.3991 25 6 5.5788 1.0174 1.1985 26 6 4.2011 1.1314 1.1980 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.6886 1.8463 0.8900 31 1 1.6887 1.8464 -0.8900 32 1 3.6640 1.1737 -2.1318 33 1 6.1187 0.9796 -2.1309 34 1 11.0034 0.9712 -2.5306 35 1 8.7311 2.3783 2.1125 36 1 10.6453 3.9781 0.3255 37 1 11.0528 2.8244 1.6343 38 1 10.9421 5.5666 2.0140 39 1 10.6192 4.3850 3.3136 40 1 8.4427 5.0769 3.4023 41 1 8.7661 6.2596 2.1037 42 1 7.0658 4.0935 1.7953 43 1 7.9653 4.8322 0.4348 44 1 6.1164 0.9704 2.1340 45 1 3.6625 1.1743 2.1331 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341013238.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:45 Heat of formation + Delta-G solvation = -92.749548 kcal Electronic energy + Delta-G solvation = -28543.015513 eV Core-core repulsion = 24652.543925 eV Total energy + Delta-G solvation = -3890.471588 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -39.11073 -37.78967 -37.49181 -35.64034 -34.24619 -33.92930 -31.87668 -31.38493 -30.56776 -27.97851 -27.36019 -26.81081 -25.39949 -24.30324 -22.36158 -21.35099 -19.76844 -19.58569 -18.77355 -17.56697 -16.55476 -16.35159 -16.09090 -15.94975 -15.60678 -15.12112 -14.77315 -14.63271 -14.26063 -14.23401 -13.45826 -13.39964 -13.07258 -12.77750 -12.64067 -12.52389 -12.36676 -12.04499 -11.89283 -11.68212 -11.49594 -11.24106 -11.08229 -10.79285 -10.75555 -10.67824 -10.41257 -10.40649 -10.34788 -10.27528 -10.09483 -9.86089 -9.78325 -9.66718 -9.49370 -8.74698 -8.65946 -8.55379 -7.60964 -6.52204 -4.14248 1.26816 1.78104 2.01781 3.22481 3.29124 3.29648 3.57491 4.13047 4.20111 4.67974 4.85354 4.89191 4.93143 5.13105 5.15311 5.19832 5.25294 5.30719 5.31786 5.37607 5.42424 5.44695 5.51029 5.77188 5.85878 6.05049 6.10430 6.15576 6.18702 6.20064 6.27425 6.34031 6.44095 6.48682 6.50302 6.57498 6.64479 6.76759 6.83946 6.89558 6.97421 7.03743 7.17095 7.33531 7.42493 7.62650 8.23987 8.91861 9.35736 10.53507 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011597 B = 0.004469 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.892248 B = 6264.409031 C = 7400.209347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.103 3.897 4 C -0.070 4.070 5 C -0.126 4.126 6 C -0.024 4.024 7 C -0.649 4.649 8 S 2.556 3.444 9 O -0.947 6.947 10 O -1.013 7.013 11 N -0.806 5.806 12 C -0.278 4.278 13 H 0.082 0.918 14 C 0.065 3.935 15 N -0.774 5.774 16 Si 0.917 3.083 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.268 1.268 20 C 0.154 3.846 21 C -0.113 4.113 22 C -0.124 4.124 23 C -0.119 4.119 24 C -0.137 4.137 25 C -0.039 4.039 26 C -0.127 4.127 27 H 0.040 0.960 28 H 0.085 0.915 29 H 0.040 0.960 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.121 0.879 33 H 0.137 0.863 34 H 0.280 0.720 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.078 0.922 44 H 0.130 0.870 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.248 5.273 3.761 12.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C 0.027 3.973 4 C -0.070 4.070 5 C -0.145 4.145 6 C -0.043 4.043 7 C -0.726 4.726 8 S 2.656 3.344 9 O -0.936 6.936 10 O -1.003 7.003 11 N -0.629 5.629 12 C -0.425 4.425 13 H 0.100 0.900 14 C -0.154 4.154 15 N -0.409 5.409 16 Si 0.743 3.257 17 H -0.198 1.198 18 H -0.207 1.207 19 H -0.193 1.193 20 C 0.045 3.955 21 C -0.152 4.152 22 C -0.162 4.162 23 C -0.158 4.158 24 C -0.177 4.177 25 C -0.058 4.058 26 C -0.146 4.146 27 H 0.059 0.941 28 H 0.104 0.896 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.139 0.861 33 H 0.154 0.846 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.096 0.904 44 H 0.148 0.852 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.760 3.953 3.865 12.097 hybrid contribution -1.195 0.543 -0.843 1.560 sum -11.955 4.496 3.022 13.125 Atomic orbital electron populations 1.22753 0.81237 1.02759 0.99878 1.88008 1.19393 1.27563 1.95372 1.21396 0.90233 0.84946 1.00759 1.19610 0.93359 1.00051 0.93992 1.21111 0.94746 1.01510 0.97091 1.20925 0.93600 0.92174 0.97627 1.32724 1.32854 1.09416 0.97561 1.10585 0.73145 0.77610 0.73088 1.93414 1.80197 1.76970 1.42996 1.93303 1.82756 1.78618 1.45606 1.52736 1.66081 1.35717 1.08320 1.18865 1.30144 1.01566 0.91934 0.90024 1.25674 0.92693 0.95931 1.01142 1.69875 1.15465 1.19560 1.35957 0.86162 0.79143 0.78160 0.82241 1.19843 1.20702 1.19322 1.21696 0.94569 0.92765 0.86434 1.22505 0.96497 0.96350 0.99888 1.22117 0.96212 0.98629 0.99268 1.22040 0.95786 0.99038 0.98905 1.22755 0.97880 0.97376 0.99685 1.20866 0.93857 0.93864 0.97243 1.21041 0.94629 1.01869 0.97046 0.94093 0.89617 0.94111 0.92443 0.92382 0.86100 0.84550 0.90982 0.90014 0.89335 0.92304 0.92458 0.92697 0.92698 0.92560 0.92857 0.90385 0.85207 0.86207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.39 16 2 O -0.38 -5.21 10.69 -35.23 -0.38 -5.59 16 3 C 0.10 1.29 6.06 36.01 0.22 1.51 16 4 C -0.07 -1.12 5.51 -104.62 -0.58 -1.70 16 5 C -0.13 -2.16 9.70 -39.59 -0.38 -2.55 16 6 C -0.02 -0.49 9.52 -39.59 -0.38 -0.87 16 7 C -0.65 -13.99 5.97 -39.58 -0.24 -14.22 16 8 S 2.56 63.59 5.45 -107.50 -0.59 63.00 16 9 O -0.95 -26.22 13.48 -57.17 -0.77 -26.99 16 10 O -1.01 -26.89 15.84 -57.17 -0.91 -27.80 16 11 N -0.81 -18.72 2.75 -51.46 -0.14 -18.86 16 12 C -0.28 -6.58 7.46 -15.06 -0.11 -6.69 16 13 H 0.08 1.82 6.95 -52.48 -0.36 1.45 16 14 C 0.06 1.60 3.99 -17.43 -0.07 1.53 16 15 N -0.77 -20.66 11.74 55.49 0.65 -20.00 16 16 Si 0.92 19.51 29.62 -169.99 -5.04 14.48 16 17 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 18 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 19 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 20 C 0.15 3.11 3.31 -65.90 -0.22 2.89 16 21 C -0.11 -2.15 6.35 -25.03 -0.16 -2.31 16 22 C -0.12 -1.86 6.80 -25.61 -0.17 -2.04 16 23 C -0.12 -1.71 6.80 -25.61 -0.17 -1.89 16 24 C -0.14 -2.34 6.39 -25.07 -0.16 -2.50 16 25 C -0.04 -0.76 9.52 -39.58 -0.38 -1.13 16 26 C -0.13 -2.11 9.70 -39.58 -0.38 -2.49 16 27 H 0.04 0.32 8.14 -51.92 -0.42 -0.11 16 28 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 31 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 32 H 0.12 1.74 8.06 -52.48 -0.42 1.32 16 33 H 0.14 2.78 7.62 -52.48 -0.40 2.38 16 34 H 0.28 7.13 8.31 -40.82 -0.34 6.80 16 35 H 0.08 1.68 6.95 -51.93 -0.36 1.32 16 36 H 0.09 1.82 7.06 -51.93 -0.37 1.46 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.08 1.38 6.75 -51.93 -0.35 1.03 16 44 H 0.13 2.38 7.61 -52.49 -0.40 1.98 16 45 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 375.82 15.07 5.66 5.66 Total: -1.00 -30.90 375.82 -10.44 -41.34 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -6.87 Total: 5.81 kcal Atomic # 6 Polarization: -28.98 SS G_CDS: -2.07 Total: -31.06 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.51 Total: -38.86 kcal Atomic # 8 Polarization: -58.32 SS G_CDS: -2.05 Total: -60.38 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.04 Total: 14.48 kcal Atomic # 16 Polarization: 63.59 SS G_CDS: -0.59 Total: 63.00 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.90 -10.44 -41.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341013238.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.407 kcal (2) G-P(sol) polarization free energy of solvation -30.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds