Wall clock time and date at job start Sat Apr 11 2020 05:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00037 * 2 1 4 4 C 1.50704 * 109.46745 * 179.97438 * 3 2 1 5 5 C 1.38235 * 119.99740 * 90.00274 * 4 3 2 6 6 C 1.38228 * 120.00169 * 179.97438 * 5 4 3 7 7 C 1.38232 * 120.00211 * 0.02562 * 6 5 4 8 8 S 1.76198 * 120.00690 * 179.97438 * 7 6 5 9 9 O 1.42107 * 106.39978 * 336.45884 * 8 7 6 10 10 O 1.42095 * 106.40750 * 203.54368 * 8 7 6 11 11 N 1.65594 * 107.21960 * 89.99695 * 8 7 6 12 12 C 1.36943 * 120.00436 * 270.00234 * 11 8 7 13 13 H 1.08005 * 119.99806 * 129.83252 * 12 11 8 14 14 C 1.38809 * 120.00082 * 309.84102 * 12 11 8 15 15 N 1.31625 * 119.99493 * 334.81430 * 14 12 11 16 16 Si 1.86797 * 120.00135 * 154.81793 * 14 12 11 17 17 H 1.48492 * 109.47608 * 59.99683 * 16 14 12 18 18 H 1.48506 * 109.46921 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47251 * 299.99218 * 16 14 12 20 20 C 1.46500 * 119.99903 * 90.00210 * 11 8 7 21 21 C 1.54967 * 110.92109 * 127.94244 * 20 11 8 22 22 C 1.54270 * 104.15958 * 156.30133 * 21 20 11 23 23 C 1.53874 * 106.63765 * 336.44010 * 22 21 20 24 24 C 1.54268 * 106.59831 * 359.97438 * 23 22 21 25 25 C 1.38241 * 119.99832 * 0.25064 * 7 6 5 26 26 C 1.38231 * 120.00206 * 270.02342 * 4 3 2 27 27 H 1.09008 * 109.46551 * 59.99910 * 1 2 3 28 28 H 1.08998 * 109.47246 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47193 * 300.00209 * 1 2 3 30 30 H 1.09001 * 109.46936 * 60.00258 * 3 2 1 31 31 H 1.08997 * 109.47479 * 299.99688 * 3 2 1 32 32 H 1.08007 * 120.00247 * 359.97438 * 5 4 3 33 33 H 1.08005 * 120.00304 * 179.97438 * 6 5 4 34 34 H 0.96999 * 119.99285 * 180.02562 * 15 14 12 35 35 H 1.09003 * 110.67014 * 4.63883 * 20 11 8 36 36 H 1.08998 * 110.48032 * 37.64516 * 21 20 11 37 37 H 1.09002 * 110.52772 * 274.97175 * 21 20 11 38 38 H 1.08999 * 110.02877 * 217.13955 * 22 21 20 39 39 H 1.08997 * 110.03471 * 95.75361 * 22 21 20 40 40 H 1.09001 * 110.03064 * 119.26310 * 23 22 21 41 41 H 1.09000 * 110.03670 * 240.64598 * 23 22 21 42 42 H 1.09001 * 110.48618 * 142.29056 * 24 23 22 43 43 H 1.09004 * 110.48471 * 264.79447 * 24 23 22 44 44 H 1.07999 * 120.00299 * 179.72478 * 25 7 6 45 45 H 1.07995 * 120.00201 * 359.97438 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 6 4.2020 1.1315 -1.1963 6 6 5.5800 1.0228 -1.1958 7 6 6.2687 0.9684 0.0016 8 16 8.0251 0.8291 0.0023 9 8 8.3826 0.2544 -1.2472 10 8 8.3817 0.2548 1.2522 11 7 8.6388 2.3671 0.0023 12 6 8.8930 3.0030 -1.1836 13 1 8.5183 4.0019 -1.3520 14 6 9.6322 2.3637 -2.1694 15 7 10.4867 1.4176 -1.8418 16 14 9.4142 2.8459 -3.9608 17 1 9.7538 4.2813 -4.1320 18 1 10.3121 2.0208 -4.8084 19 1 8.0037 2.6192 -4.3664 20 6 8.9098 3.0477 1.2710 21 6 10.3582 3.5975 1.3057 22 6 10.3017 4.7451 2.3351 23 6 8.8365 5.2115 2.3949 24 6 8.0530 4.3316 1.3991 25 6 5.5788 1.0174 1.1985 26 6 4.2011 1.1314 1.1980 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.6886 1.8463 0.8900 31 1 1.6887 1.8464 -0.8900 32 1 3.6640 1.1737 -2.1318 33 1 6.1187 0.9796 -2.1309 34 1 11.0034 0.9712 -2.5306 35 1 8.7311 2.3783 2.1125 36 1 10.6453 3.9781 0.3255 37 1 11.0528 2.8244 1.6343 38 1 10.9421 5.5666 2.0140 39 1 10.6192 4.3850 3.3136 40 1 8.4427 5.0769 3.4023 41 1 8.7661 6.2596 2.1037 42 1 7.0658 4.0935 1.7953 43 1 7.9653 4.8322 0.4348 44 1 6.1164 0.9704 2.1340 45 1 3.6625 1.1743 2.1331 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341013238.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:44 Heat of formation + Delta-G solvation = -111.953307 kcal Electronic energy + Delta-G solvation = -28543.848250 eV Core-core repulsion = 24652.543925 eV Total energy + Delta-G solvation = -3891.304325 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -40.39392 -39.29324 -38.50263 -37.65649 -36.16793 -35.74269 -33.26906 -33.08636 -31.98893 -29.35561 -28.38243 -28.28000 -26.37121 -26.06650 -23.77568 -22.70489 -21.37245 -20.88983 -20.58570 -19.22397 -18.11081 -17.66602 -17.36879 -17.10893 -16.99570 -16.84700 -16.24093 -16.03124 -15.77722 -15.53960 -15.14202 -14.71380 -14.45929 -14.31428 -14.05395 -14.01304 -13.67036 -13.57795 -13.20538 -13.15962 -12.88583 -12.77372 -12.46357 -12.37336 -12.26912 -12.26027 -12.11658 -12.06996 -11.95339 -11.78761 -11.73103 -11.35623 -11.15242 -11.05066 -10.68542 -10.55223 -10.14412 -9.97813 -9.41064 -8.40247 -6.05301 -0.19283 0.16901 0.35555 1.49525 1.56862 1.60457 2.30108 2.40649 2.90871 3.05468 3.11400 3.48815 3.69568 3.82700 3.95068 3.98363 4.00337 4.01170 4.17997 4.34263 4.36508 4.38845 4.54612 4.55361 4.57613 4.65265 4.78373 4.79697 4.84943 4.85897 4.90767 5.02108 5.02637 5.15266 5.17739 5.25197 5.27956 5.33845 5.41792 5.42447 5.50792 5.59589 5.70114 5.92365 5.98068 6.17402 6.35038 7.06865 7.50952 8.65512 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011597 B = 0.004469 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.892248 B = 6264.409031 C = 7400.209347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.415 6.415 3 C 0.104 3.896 4 C -0.062 4.062 5 C -0.124 4.124 6 C -0.045 4.045 7 C -0.672 4.672 8 S 2.555 3.445 9 O -0.988 6.988 10 O -1.044 7.044 11 N -0.815 5.815 12 C -0.276 4.276 13 H 0.096 0.904 14 C 0.023 3.977 15 N -0.819 5.819 16 Si 0.967 3.033 17 H -0.247 1.247 18 H -0.288 1.288 19 H -0.268 1.268 20 C 0.139 3.861 21 C -0.114 4.114 22 C -0.116 4.116 23 C -0.112 4.112 24 C -0.130 4.130 25 C -0.053 4.053 26 C -0.120 4.120 27 H 0.055 0.945 28 H 0.093 0.907 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.150 0.850 33 H 0.121 0.879 34 H 0.275 0.725 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.037 0.963 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.070 0.930 44 H 0.130 0.870 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.585 7.690 4.459 17.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C 0.028 3.972 4 C -0.062 4.062 5 C -0.143 4.143 6 C -0.065 4.065 7 C -0.753 4.753 8 S 2.660 3.340 9 O -0.976 6.976 10 O -1.033 7.033 11 N -0.638 5.638 12 C -0.423 4.423 13 H 0.114 0.886 14 C -0.192 4.192 15 N -0.455 5.455 16 Si 0.790 3.210 17 H -0.171 1.171 18 H -0.214 1.214 19 H -0.192 1.192 20 C 0.032 3.968 21 C -0.154 4.154 22 C -0.154 4.154 23 C -0.150 4.150 24 C -0.170 4.170 25 C -0.072 4.072 26 C -0.139 4.139 27 H 0.073 0.927 28 H 0.111 0.889 29 H 0.075 0.925 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.168 0.832 33 H 0.139 0.861 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.056 0.944 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.089 0.911 44 H 0.148 0.852 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -14.054 6.400 4.576 16.106 hybrid contribution -0.340 -0.273 -0.990 1.081 sum -14.393 6.128 3.587 16.049 Atomic orbital electron populations 1.22973 0.78918 1.03869 1.01371 1.87949 1.21911 1.27983 1.95708 1.21463 0.87366 0.85223 1.03132 1.20114 0.95831 0.97197 0.93084 1.21421 0.93386 1.00285 0.99170 1.20933 0.95258 0.93761 0.96506 1.32102 1.30856 1.12983 0.99370 1.10061 0.74297 0.77847 0.71780 1.93351 1.81830 1.78135 1.44313 1.93242 1.84053 1.79559 1.46495 1.52652 1.66607 1.35225 1.09313 1.19166 1.29176 1.01849 0.92149 0.88640 1.26536 0.92143 0.95739 1.04784 1.69981 1.17218 1.21583 1.36723 0.85397 0.78756 0.79100 0.77782 1.17125 1.21412 1.19247 1.21979 0.96227 0.93831 0.84753 1.22467 0.95302 0.97384 1.00216 1.22082 0.97499 0.97331 0.98481 1.22034 0.94346 0.99474 0.99135 1.22679 0.98124 0.95793 1.00359 1.21000 0.95423 0.94504 0.96283 1.21429 0.93391 1.00025 0.99050 0.92686 0.88856 0.92471 0.89888 0.90287 0.83246 0.86083 0.91526 0.91165 0.91375 0.94387 0.90749 0.91265 0.90706 0.90359 0.91986 0.91132 0.85233 0.82613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 11.01 113.37 1.25 1.60 16 2 O -0.42 -9.73 10.69 -148.98 -1.59 -11.32 16 3 C 0.10 2.15 6.06 71.24 0.43 2.58 16 4 C -0.06 -1.79 5.51 -19.87 -0.11 -1.90 16 5 C -0.12 -4.04 9.70 22.27 0.22 -3.82 16 6 C -0.05 -1.85 9.52 22.27 0.21 -1.64 16 7 C -0.67 -29.70 5.97 22.27 0.13 -29.57 16 8 S 2.56 134.12 5.45 -56.49 -0.31 133.81 16 9 O -0.99 -58.17 13.48 -128.00 -1.73 -59.89 16 10 O -1.04 -58.69 15.84 -128.00 -2.03 -60.71 16 11 N -0.81 -39.40 2.75 -316.71 -0.87 -40.28 16 12 C -0.28 -13.47 7.46 84.03 0.63 -12.85 16 13 H 0.10 4.28 6.95 -2.91 -0.02 4.26 16 14 C 0.02 1.16 3.99 84.86 0.34 1.50 16 15 N -0.82 -46.20 11.74 21.65 0.25 -45.94 16 16 Si 0.97 40.60 29.62 68.60 2.03 42.63 16 17 H -0.25 -9.30 7.11 99.48 0.71 -8.59 16 18 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 19 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 20 C 0.14 5.79 3.31 46.31 0.15 5.94 16 21 C -0.11 -4.45 6.35 31.70 0.20 -4.25 16 22 C -0.12 -3.28 6.80 31.32 0.21 -3.06 16 23 C -0.11 -2.88 6.80 31.32 0.21 -2.67 16 24 C -0.13 -4.28 6.39 31.67 0.20 -4.08 16 25 C -0.05 -2.02 9.52 22.27 0.21 -1.81 16 26 C -0.12 -3.68 9.70 22.27 0.22 -3.46 16 27 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 28 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.08 1.32 8.09 -2.39 -0.02 1.30 16 31 H 0.08 1.32 8.09 -2.39 -0.02 1.30 16 32 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 33 H 0.12 5.18 7.62 -2.91 -0.02 5.16 16 34 H 0.28 14.95 8.31 -92.71 -0.77 14.18 16 35 H 0.07 3.02 6.95 -2.39 -0.02 3.01 16 36 H 0.07 2.91 7.06 -2.39 -0.02 2.89 16 37 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.07 2.41 6.75 -2.38 -0.02 2.40 16 44 H 0.13 4.82 7.61 -2.91 -0.02 4.79 16 45 H 0.16 3.58 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -71.56 375.82 1.24 -70.31 By element: Atomic # 1 Polarization: 27.90 SS G_CDS: 0.98 Total: 28.88 kcal Atomic # 6 Polarization: -62.00 SS G_CDS: 4.51 Total: -57.49 kcal Atomic # 7 Polarization: -85.60 SS G_CDS: -0.62 Total: -86.22 kcal Atomic # 8 Polarization: -126.58 SS G_CDS: -5.35 Total: -131.93 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.63 kcal Atomic # 16 Polarization: 134.12 SS G_CDS: -0.31 Total: 133.81 kcal Total: -71.56 1.24 -70.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341013238.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.642 kcal (2) G-P(sol) polarization free energy of solvation -71.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds