Wall clock time and date at job start Sat Apr 11 2020 05:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21252 * 120.00271 * 2 1 4 4 C 1.47163 * 120.00050 * 179.97438 * 2 1 3 5 5 C 1.39878 * 120.17212 * 0.02562 * 4 2 1 6 6 C 1.37864 * 119.82558 * 179.97438 * 5 4 2 7 7 C 1.38430 * 120.17128 * 0.27823 * 6 5 4 8 8 C 1.38377 * 120.34822 * 359.44567 * 7 6 5 9 9 S 1.76197 * 119.91329 * 180.30137 * 8 7 6 10 10 O 1.42099 * 106.40277 * 23.78828 * 9 8 7 11 11 O 1.42101 * 106.40396 * 156.71097 * 9 8 7 12 12 N 1.65596 * 107.21933 * 270.25049 * 9 8 7 13 13 C 1.46502 * 120.00204 * 64.99622 * 12 9 8 14 14 C 1.53000 * 109.47331 * 165.00071 * 13 12 9 15 15 C 1.52999 * 109.47272 * 300.00249 * 14 13 12 16 16 C 1.52999 * 109.46681 * 60.00397 * 14 13 12 17 17 C 1.52998 * 109.47300 * 180.02562 * 14 13 12 18 18 C 1.50695 * 109.47331 * 179.97438 * 17 14 13 19 19 H 1.08001 * 119.99995 * 0.02562 * 18 17 14 20 20 C 1.37878 * 119.99947 * 179.97438 * 18 17 14 21 21 N 1.31518 * 119.99748 * 180.02562 * 20 18 17 22 22 Si 1.86791 * 120.00249 * 0.02562 * 20 18 17 23 23 H 1.48495 * 109.47248 * 89.99602 * 22 20 18 24 24 H 1.48497 * 109.47561 * 209.99963 * 22 20 18 25 25 H 1.48509 * 109.47000 * 330.00076 * 22 20 18 26 26 C 1.37915 * 120.17373 * 0.55224 * 8 7 6 27 27 H 1.08997 * 109.47385 * 240.00196 * 1 2 3 28 28 H 1.09005 * 109.46816 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46462 * 119.99781 * 1 2 3 30 30 H 1.07999 * 120.08688 * 359.97438 * 5 4 2 31 31 H 1.08002 * 119.90999 * 179.97438 * 6 5 4 32 32 H 1.07996 * 119.82062 * 179.69897 * 7 6 5 33 33 H 0.96999 * 120.00209 * 245.00259 * 12 9 8 34 34 H 1.09000 * 109.47031 * 285.00153 * 13 12 9 35 35 H 1.09000 * 109.46889 * 45.00284 * 13 12 9 36 36 H 1.09003 * 109.46765 * 59.99835 * 15 14 13 37 37 H 1.09001 * 109.47153 * 179.97438 * 15 14 13 38 38 H 1.09000 * 109.47134 * 299.99901 * 15 14 13 39 39 H 1.08991 * 109.47480 * 60.00173 * 16 14 13 40 40 H 1.09006 * 109.46676 * 180.02562 * 16 14 13 41 41 H 1.08995 * 109.47366 * 299.99466 * 16 14 13 42 42 H 1.09002 * 109.46988 * 300.00769 * 17 14 13 43 43 H 1.09000 * 109.47036 * 60.00142 * 17 14 13 44 44 H 0.96997 * 119.99932 * 179.97438 * 21 20 18 45 45 H 1.08000 * 120.08533 * 179.74995 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2429 -1.2745 0.0006 5 6 1.5471 -2.4879 0.0006 6 6 2.2437 -3.6777 0.0006 7 6 3.6280 -3.6734 0.0064 8 6 4.3235 -2.4772 0.0007 9 16 6.0854 -2.4852 0.0001 10 8 6.4808 -3.7369 -0.5441 11 8 6.4923 -1.2374 -0.5447 12 7 6.5761 -2.4871 1.5817 13 6 6.2758 -3.6354 2.4405 14 6 7.1353 -3.5657 3.7043 15 6 8.6152 -3.5920 3.3168 16 6 6.8286 -2.2706 4.4589 17 6 6.8221 -4.7653 4.6009 18 6 7.6692 -4.6970 5.8454 19 1 8.3614 -3.8796 5.9833 20 6 7.5597 -5.6776 6.8085 21 7 8.2986 -5.6177 7.8948 22 14 6.3620 -7.0911 6.5704 23 1 7.0456 -8.2060 5.8671 24 1 5.8817 -7.5615 7.8944 25 1 5.2063 -6.6294 5.7600 26 6 3.6412 -1.2786 0.0006 27 1 -0.3634 -0.5138 0.8900 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3632 -0.5138 -0.8900 30 1 0.4671 -2.4928 0.0006 31 1 1.7079 -4.6154 0.0010 32 1 4.1679 -4.6088 0.0113 33 1 7.0623 -1.7279 1.9396 34 1 5.2215 -3.6167 2.7167 35 1 6.4943 -4.5581 1.9030 36 1 8.8386 -2.7376 2.6778 37 1 9.2275 -3.5419 4.2171 38 1 8.8337 -4.5147 2.7792 39 1 5.7744 -2.2519 4.7350 40 1 7.4413 -2.2207 5.3591 41 1 7.0520 -1.4162 3.8200 42 1 5.7678 -4.7471 4.8770 43 1 7.0409 -5.6878 4.0631 44 1 8.2213 -6.3074 8.5725 45 1 4.1855 -0.3458 0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345043452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:23 Heat of formation + Delta-G solvation = -98.784909 kcal Electronic energy + Delta-G solvation = -27489.456034 eV Core-core repulsion = 23598.722733 eV Total energy + Delta-G solvation = -3890.733301 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.41935 -38.58555 -37.91020 -37.25574 -35.92987 -33.66235 -32.67546 -31.98074 -31.62874 -29.87985 -27.76319 -26.53879 -25.96524 -24.45308 -23.44497 -22.38164 -20.89620 -19.37164 -18.44245 -18.16669 -17.32067 -16.90727 -16.44302 -16.40360 -15.95561 -15.70410 -15.44034 -14.85450 -14.44197 -14.33422 -14.28064 -14.11867 -13.73950 -13.33043 -13.00766 -12.81068 -12.70169 -12.61523 -12.58041 -12.41912 -12.20170 -12.15945 -11.98805 -11.95701 -11.35304 -11.16663 -11.11728 -11.01063 -10.63410 -10.56176 -10.21137 -10.01717 -9.90723 -9.81156 -9.55309 -9.52140 -9.35788 -9.01021 -8.56320 -6.06402 -4.03722 0.03061 0.30766 0.57406 1.86362 2.88445 3.17879 3.27607 3.35747 3.36659 3.51815 3.65784 4.16319 4.32853 4.42004 4.43612 4.49262 4.69102 4.78387 4.90427 4.98688 5.11977 5.14199 5.25426 5.33681 5.41677 5.45136 5.57201 5.63274 5.66697 5.70786 5.73457 5.99417 6.08812 6.20396 6.25817 6.32807 6.56904 6.61788 6.88853 7.00062 7.04468 7.05885 7.06291 7.16319 7.32842 7.75672 8.51091 8.98501 9.55796 11.06509 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013007 B = 0.003169 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.235909 B = 8833.609592 C = 9556.453992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.394 3.606 3 O -0.451 6.451 4 C -0.196 4.196 5 C -0.022 4.022 6 C -0.151 4.151 7 C 0.012 3.988 8 C -0.686 4.686 9 S 2.693 3.307 10 O -0.953 6.953 11 O -0.961 6.961 12 N -1.107 6.107 13 C 0.120 3.880 14 C -0.055 4.055 15 C -0.131 4.131 16 C -0.130 4.130 17 C -0.004 4.004 18 C -0.511 4.511 19 H 0.079 0.921 20 C 0.066 3.934 21 N -0.903 5.903 22 Si 0.876 3.124 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.266 1.266 26 C 0.039 3.961 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.140 0.860 31 H 0.141 0.859 32 H 0.148 0.852 33 H 0.420 0.580 34 H 0.060 0.940 35 H 0.078 0.922 36 H 0.035 0.965 37 H 0.071 0.929 38 H 0.048 0.952 39 H 0.046 0.954 40 H 0.073 0.927 41 H 0.034 0.966 42 H 0.017 0.983 43 H 0.015 0.985 44 H 0.262 0.738 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.173 6.329 -17.065 24.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.272 3.728 3 O -0.326 6.326 4 C -0.198 4.198 5 C -0.040 4.040 6 C -0.169 4.169 7 C -0.007 4.007 8 C -0.771 4.771 9 S 2.781 3.219 10 O -0.943 6.943 11 O -0.951 6.951 12 N -0.870 5.870 13 C -0.006 4.006 14 C -0.057 4.057 15 C -0.188 4.188 16 C -0.188 4.188 17 C -0.042 4.042 18 C -0.549 4.549 19 H 0.097 0.903 20 C -0.135 4.135 21 N -0.543 5.543 22 Si 0.703 3.297 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.191 1.191 26 C 0.019 3.981 27 H 0.114 0.886 28 H 0.106 0.894 29 H 0.113 0.887 30 H 0.158 0.842 31 H 0.159 0.841 32 H 0.166 0.834 33 H 0.257 0.743 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.054 0.946 37 H 0.090 0.910 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.092 0.908 41 H 0.053 0.947 42 H 0.036 0.964 43 H 0.033 0.967 44 H 0.072 0.928 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -15.405 6.637 -17.707 24.391 hybrid contribution -1.272 -0.727 0.548 1.564 sum -16.677 5.910 -17.159 24.647 Atomic orbital electron populations 1.22258 0.93286 1.05538 1.04611 1.22490 0.91827 0.87324 0.71182 1.90581 1.72119 1.34088 1.35833 1.20660 0.94532 0.95351 1.09208 1.21756 1.00500 0.91509 0.90260 1.21327 0.94263 0.98750 1.02595 1.21311 0.95026 0.96980 0.87429 1.31205 1.28310 0.99097 1.18536 1.01954 0.73392 0.73725 0.72837 1.93597 1.80206 1.43935 1.76567 1.93597 1.80968 1.43884 1.76628 1.55462 1.71471 1.29412 1.30702 1.21647 0.99482 0.86758 0.92683 1.20596 0.94699 0.98116 0.92274 1.21783 0.95769 0.99893 1.01375 1.21781 1.01554 0.94889 1.00530 1.19630 0.97135 0.92237 0.95179 1.21087 1.22373 1.10268 1.01142 0.90336 1.25012 0.95536 0.97838 0.95117 1.69903 1.40352 1.34859 1.09145 0.86851 0.82263 0.83158 0.77398 1.20336 1.21563 1.19115 1.21196 0.93663 0.97289 0.85935 0.88612 0.89380 0.88737 0.84203 0.84093 0.83423 0.74275 0.92165 0.90408 0.94592 0.90961 0.93253 0.93442 0.90795 0.94746 0.96441 0.96693 0.92789 0.83169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.97 8.93 36.01 0.32 -0.64 16 2 C 0.39 3.65 7.23 -30.68 -0.22 3.43 16 3 O -0.45 -5.90 17.08 5.58 0.10 -5.81 16 4 C -0.20 -1.86 5.87 -105.06 -0.62 -2.47 16 5 C -0.02 -0.15 9.47 -39.10 -0.37 -0.52 16 6 C -0.15 -1.12 10.03 -39.65 -0.40 -1.52 16 7 C 0.01 0.11 9.52 -39.46 -0.38 -0.26 16 8 C -0.69 -7.76 5.94 -39.65 -0.24 -8.00 16 9 S 2.69 34.93 5.73 -107.50 -0.62 34.31 16 10 O -0.95 -14.46 16.75 -57.17 -0.96 -15.42 16 11 O -0.96 -14.58 17.27 -57.17 -0.99 -15.57 16 12 N -1.11 -14.05 5.33 -10.61 -0.06 -14.11 16 13 C 0.12 1.71 5.11 -4.04 -0.02 1.69 16 14 C -0.06 -0.96 0.55 -154.51 -0.08 -1.05 16 15 C -0.13 -2.28 8.05 37.16 0.30 -1.98 16 16 C -0.13 -2.17 8.05 37.16 0.30 -1.87 16 17 C 0.00 -0.08 3.11 -27.89 -0.09 -0.17 16 18 C -0.51 -13.32 8.20 -34.44 -0.28 -13.61 16 19 H 0.08 2.19 5.92 -52.49 -0.31 1.88 16 20 C 0.07 1.82 5.47 -17.82 -0.10 1.73 16 21 N -0.90 -26.83 13.96 55.43 0.77 -26.06 16 22 Si 0.88 20.75 27.47 -169.99 -4.67 16.08 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.27 -5.97 6.54 56.52 0.37 -5.60 16 26 C 0.04 0.44 9.07 -39.10 -0.35 0.09 16 27 H 0.10 0.30 8.09 -51.93 -0.42 -0.12 16 28 H 0.09 0.44 8.12 -51.93 -0.42 0.02 16 29 H 0.09 0.26 8.09 -51.93 -0.42 -0.16 16 30 H 0.14 0.45 7.05 -52.49 -0.37 0.08 16 31 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16 32 H 0.15 1.27 7.61 -52.49 -0.40 0.87 16 33 H 0.42 4.93 6.47 -34.47 -0.22 4.70 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 1.10 7.75 -51.93 -0.40 0.69 16 36 H 0.04 0.53 7.20 -51.93 -0.37 0.16 16 37 H 0.07 1.41 6.62 -51.93 -0.34 1.07 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.07 1.41 6.62 -51.93 -0.34 1.07 16 41 H 0.03 0.47 6.60 -51.93 -0.34 0.13 16 42 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 43 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 44 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.15 1.79 7.20 -52.49 -0.38 1.41 16 LS Contribution 377.84 15.07 5.69 5.69 Total: -1.00 -34.84 377.84 -9.32 -44.16 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -6.37 Total: 1.87 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: -2.22 Total: -25.15 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: 0.72 Total: -40.17 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: -1.85 Total: -36.80 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.67 Total: 16.08 kcal Atomic # 16 Polarization: 34.93 SS G_CDS: -0.62 Total: 34.31 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.84 -9.32 -44.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345043452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.624 kcal (2) G-P(sol) polarization free energy of solvation -34.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds