Wall clock time and date at job start Sat Apr 11 2020 05:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21252 * 120.00271 * 2 1 4 4 C 1.47163 * 120.00050 * 179.97438 * 2 1 3 5 5 C 1.39878 * 120.17212 * 0.02562 * 4 2 1 6 6 C 1.37864 * 119.82558 * 179.97438 * 5 4 2 7 7 C 1.38430 * 120.17128 * 0.27823 * 6 5 4 8 8 C 1.38377 * 120.34822 * 359.44567 * 7 6 5 9 9 S 1.76197 * 119.91329 * 180.30137 * 8 7 6 10 10 O 1.42099 * 106.40277 * 23.78828 * 9 8 7 11 11 O 1.42101 * 106.40396 * 156.71097 * 9 8 7 12 12 N 1.65596 * 107.21933 * 270.25049 * 9 8 7 13 13 C 1.46502 * 120.00204 * 64.99622 * 12 9 8 14 14 C 1.53000 * 109.47331 * 165.00071 * 13 12 9 15 15 C 1.52999 * 109.47272 * 300.00249 * 14 13 12 16 16 C 1.52999 * 109.46681 * 60.00397 * 14 13 12 17 17 C 1.52998 * 109.47300 * 180.02562 * 14 13 12 18 18 C 1.50695 * 109.47331 * 179.97438 * 17 14 13 19 19 H 1.08001 * 119.99995 * 0.02562 * 18 17 14 20 20 C 1.37878 * 119.99947 * 179.97438 * 18 17 14 21 21 N 1.31518 * 119.99748 * 180.02562 * 20 18 17 22 22 Si 1.86791 * 120.00249 * 0.02562 * 20 18 17 23 23 H 1.48495 * 109.47248 * 89.99602 * 22 20 18 24 24 H 1.48497 * 109.47561 * 209.99963 * 22 20 18 25 25 H 1.48509 * 109.47000 * 330.00076 * 22 20 18 26 26 C 1.37915 * 120.17373 * 0.55224 * 8 7 6 27 27 H 1.08997 * 109.47385 * 240.00196 * 1 2 3 28 28 H 1.09005 * 109.46816 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46462 * 119.99781 * 1 2 3 30 30 H 1.07999 * 120.08688 * 359.97438 * 5 4 2 31 31 H 1.08002 * 119.90999 * 179.97438 * 6 5 4 32 32 H 1.07996 * 119.82062 * 179.69897 * 7 6 5 33 33 H 0.96999 * 120.00209 * 245.00259 * 12 9 8 34 34 H 1.09000 * 109.47031 * 285.00153 * 13 12 9 35 35 H 1.09000 * 109.46889 * 45.00284 * 13 12 9 36 36 H 1.09003 * 109.46765 * 59.99835 * 15 14 13 37 37 H 1.09001 * 109.47153 * 179.97438 * 15 14 13 38 38 H 1.09000 * 109.47134 * 299.99901 * 15 14 13 39 39 H 1.08991 * 109.47480 * 60.00173 * 16 14 13 40 40 H 1.09006 * 109.46676 * 180.02562 * 16 14 13 41 41 H 1.08995 * 109.47366 * 299.99466 * 16 14 13 42 42 H 1.09002 * 109.46988 * 300.00769 * 17 14 13 43 43 H 1.09000 * 109.47036 * 60.00142 * 17 14 13 44 44 H 0.96997 * 119.99932 * 179.97438 * 21 20 18 45 45 H 1.08000 * 120.08533 * 179.74995 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2429 -1.2745 0.0006 5 6 1.5471 -2.4879 0.0006 6 6 2.2437 -3.6777 0.0006 7 6 3.6280 -3.6734 0.0064 8 6 4.3235 -2.4772 0.0007 9 16 6.0854 -2.4852 0.0001 10 8 6.4808 -3.7369 -0.5441 11 8 6.4923 -1.2374 -0.5447 12 7 6.5761 -2.4871 1.5817 13 6 6.2758 -3.6354 2.4405 14 6 7.1353 -3.5657 3.7043 15 6 8.6152 -3.5920 3.3168 16 6 6.8286 -2.2706 4.4589 17 6 6.8221 -4.7653 4.6009 18 6 7.6692 -4.6970 5.8454 19 1 8.3614 -3.8796 5.9833 20 6 7.5597 -5.6776 6.8085 21 7 8.2986 -5.6177 7.8948 22 14 6.3620 -7.0911 6.5704 23 1 7.0456 -8.2060 5.8671 24 1 5.8817 -7.5615 7.8944 25 1 5.2063 -6.6294 5.7600 26 6 3.6412 -1.2786 0.0006 27 1 -0.3634 -0.5138 0.8900 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3632 -0.5138 -0.8900 30 1 0.4671 -2.4928 0.0006 31 1 1.7079 -4.6154 0.0010 32 1 4.1679 -4.6088 0.0113 33 1 7.0623 -1.7279 1.9396 34 1 5.2215 -3.6167 2.7167 35 1 6.4943 -4.5581 1.9030 36 1 8.8386 -2.7376 2.6778 37 1 9.2275 -3.5419 4.2171 38 1 8.8337 -4.5147 2.7792 39 1 5.7744 -2.2519 4.7350 40 1 7.4413 -2.2207 5.3591 41 1 7.0520 -1.4162 3.8200 42 1 5.7678 -4.7471 4.8770 43 1 7.0409 -5.6878 4.0631 44 1 8.2213 -6.3074 8.5725 45 1 4.1855 -0.3458 0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345043452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:22 Heat of formation + Delta-G solvation = -123.431604 kcal Electronic energy + Delta-G solvation = -27490.524794 eV Core-core repulsion = 23598.722733 eV Total energy + Delta-G solvation = -3891.802062 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.10735 -39.34321 -39.23053 -38.38222 -37.04537 -35.20199 -33.76167 -33.32899 -32.29285 -30.37049 -29.58252 -27.95624 -27.24153 -25.09731 -24.20115 -24.12302 -21.60982 -20.36112 -19.82974 -18.95401 -18.85207 -18.41765 -17.33985 -17.16016 -16.69476 -16.64444 -16.20187 -16.09912 -15.76698 -15.60533 -15.31342 -15.15336 -14.93019 -14.33208 -14.21970 -14.11633 -13.92179 -13.57531 -13.35835 -13.32198 -13.23825 -13.06692 -13.03837 -12.95467 -12.74826 -12.71758 -12.63796 -12.25474 -12.12677 -11.97161 -11.68596 -11.49418 -11.12043 -10.90729 -10.88491 -10.66295 -10.58800 -10.41066 -10.20272 -8.17808 -6.18739 -0.74926 -0.55516 -0.16927 1.22216 1.42003 1.42509 1.53253 1.94284 2.43747 2.43983 2.69953 2.90879 3.18013 3.29099 3.69548 3.84418 3.87956 3.91352 4.11052 4.12593 4.16227 4.26318 4.38065 4.48350 4.66192 4.67108 4.71336 4.72165 4.76541 4.86517 4.91064 4.99051 5.04225 5.09497 5.12670 5.13974 5.24732 5.36003 5.45584 5.46117 5.59728 5.65494 5.72516 5.81729 6.01449 6.43393 6.43507 6.89240 7.43866 8.98366 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013007 B = 0.003169 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.235909 B = 8833.609592 C = 9556.453992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.392 3.608 3 O -0.505 6.505 4 C -0.210 4.210 5 C -0.002 4.002 6 C -0.144 4.144 7 C -0.002 4.002 8 C -0.692 4.692 9 S 2.708 3.292 10 O -0.978 6.978 11 O -0.990 6.990 12 N -1.106 6.106 13 C 0.126 3.874 14 C -0.055 4.055 15 C -0.130 4.130 16 C -0.127 4.127 17 C -0.004 4.004 18 C -0.504 4.504 19 H 0.044 0.956 20 C -0.001 4.001 21 N -0.958 5.958 22 Si 0.940 3.060 23 H -0.273 1.273 24 H -0.293 1.293 25 H -0.238 1.238 26 C 0.014 3.986 27 H 0.122 0.878 28 H 0.083 0.917 29 H 0.124 0.876 30 H 0.188 0.812 31 H 0.179 0.821 32 H 0.157 0.843 33 H 0.424 0.576 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.060 0.940 37 H 0.040 0.960 38 H 0.048 0.952 39 H 0.054 0.946 40 H 0.039 0.961 41 H 0.062 0.938 42 H 0.027 0.973 43 H 0.020 0.980 44 H 0.261 0.739 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.419 4.890 -18.896 28.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.273 3.727 3 O -0.384 6.384 4 C -0.211 4.211 5 C -0.020 4.020 6 C -0.163 4.163 7 C -0.021 4.021 8 C -0.781 4.781 9 S 2.800 3.200 10 O -0.968 6.968 11 O -0.980 6.980 12 N -0.869 5.869 13 C 0.000 4.000 14 C -0.056 4.056 15 C -0.188 4.188 16 C -0.185 4.185 17 C -0.042 4.042 18 C -0.542 4.542 19 H 0.062 0.938 20 C -0.197 4.197 21 N -0.600 5.600 22 Si 0.765 3.235 23 H -0.198 1.198 24 H -0.220 1.220 25 H -0.161 1.161 26 C -0.006 4.006 27 H 0.140 0.860 28 H 0.102 0.898 29 H 0.142 0.858 30 H 0.205 0.795 31 H 0.196 0.804 32 H 0.174 0.826 33 H 0.261 0.739 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.079 0.921 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.058 0.942 41 H 0.081 0.919 42 H 0.045 0.955 43 H 0.039 0.961 44 H 0.070 0.930 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -19.625 5.200 -19.562 28.193 hybrid contribution 0.039 -0.219 1.095 1.117 sum -19.586 4.982 -18.467 27.376 Atomic orbital electron populations 1.22320 0.89318 1.06266 1.07107 1.23242 0.93919 0.86388 0.69103 1.90571 1.73501 1.35704 1.38621 1.20913 0.93784 0.96909 1.09541 1.22276 1.02712 0.89866 0.87168 1.21802 0.93279 1.00531 1.00645 1.21618 0.96534 0.96426 0.87534 1.30703 1.26415 1.00011 1.20957 1.01164 0.74021 0.72488 0.72320 1.93558 1.81406 1.44691 1.77097 1.93557 1.82220 1.45055 1.77191 1.55312 1.72039 1.29174 1.30341 1.21511 0.99865 0.87473 0.91123 1.20501 0.95168 0.96668 0.93302 1.21752 0.95625 1.01042 1.00331 1.21726 1.01269 0.95854 0.99622 1.19607 0.96465 0.94333 0.93844 1.21427 1.21543 1.08571 1.02676 0.93803 1.25953 0.97729 1.01114 0.94879 1.70076 1.43007 1.36288 1.10591 0.85805 0.80695 0.79546 0.77483 1.19819 1.21972 1.16113 1.21187 0.95106 0.96641 0.87684 0.85964 0.89808 0.85788 0.79522 0.80414 0.82563 0.73855 0.89994 0.89833 0.92112 0.94105 0.93272 0.92707 0.94157 0.91946 0.95509 0.96141 0.93014 0.85185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.12 8.93 71.24 0.64 -0.48 16 2 C 0.39 6.58 7.23 28.03 0.20 6.78 16 3 O -0.51 -13.44 17.08 -2.94 -0.05 -13.49 16 4 C -0.21 -3.47 5.87 -20.15 -0.12 -3.59 16 5 C 0.00 -0.02 9.47 22.58 0.21 0.19 16 6 C -0.14 -1.41 10.03 22.23 0.22 -1.19 16 7 C 0.00 -0.03 9.52 22.35 0.21 0.18 16 8 C -0.69 -14.71 5.94 22.23 0.13 -14.58 16 9 S 2.71 68.89 5.73 -56.49 -0.32 68.57 16 10 O -0.98 -28.85 16.75 -128.00 -2.14 -31.00 16 11 O -0.99 -30.70 17.27 -128.00 -2.21 -32.91 16 12 N -1.11 -26.70 5.33 -187.48 -1.00 -27.70 16 13 C 0.13 3.32 5.11 86.38 0.44 3.76 16 14 C -0.05 -1.85 0.55 -52.18 -0.03 -1.88 16 15 C -0.13 -4.54 8.05 71.98 0.58 -3.96 16 16 C -0.13 -4.19 8.05 71.98 0.58 -3.61 16 17 C 0.00 -0.19 3.11 29.85 0.09 -0.09 16 18 C -0.50 -26.85 8.20 25.60 0.21 -26.64 16 19 H 0.04 2.58 5.92 -2.91 -0.02 2.57 16 20 C 0.00 -0.07 5.47 84.65 0.46 0.39 16 21 N -0.96 -58.90 13.96 21.45 0.30 -58.60 16 22 Si 0.94 42.26 27.47 68.60 1.88 44.14 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 24 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 25 H -0.24 -9.51 6.54 99.48 0.65 -8.86 16 26 C 0.01 0.30 9.07 22.58 0.20 0.51 16 27 H 0.12 0.11 8.09 -2.39 -0.02 0.09 16 28 H 0.08 0.61 8.12 -2.38 -0.02 0.59 16 29 H 0.12 0.03 8.09 -2.39 -0.02 0.01 16 30 H 0.19 -0.17 7.05 -2.91 -0.02 -0.19 16 31 H 0.18 0.47 8.06 -2.91 -0.02 0.44 16 32 H 0.16 2.19 7.61 -2.91 -0.02 2.17 16 33 H 0.42 9.52 6.47 -96.75 -0.63 8.89 16 34 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.08 2.14 7.75 -2.39 -0.02 2.12 16 36 H 0.06 1.77 7.20 -2.39 -0.02 1.76 16 37 H 0.04 1.65 6.62 -2.39 -0.02 1.64 16 38 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.04 1.58 6.62 -2.38 -0.02 1.56 16 41 H 0.06 1.67 6.60 -2.39 -0.02 1.65 16 42 H 0.03 1.08 7.20 -2.39 -0.02 1.06 16 43 H 0.02 0.84 7.57 -2.39 -0.02 0.82 16 44 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 45 H 0.13 3.31 7.20 -2.91 -0.02 3.29 16 Total: -1.00 -80.70 377.84 0.83 -79.87 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.33 Total: 15.32 kcal Atomic # 6 Polarization: -48.25 SS G_CDS: 4.04 Total: -44.21 kcal Atomic # 7 Polarization: -85.60 SS G_CDS: -0.70 Total: -86.30 kcal Atomic # 8 Polarization: -73.00 SS G_CDS: -4.40 Total: -77.40 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 1.88 Total: 44.14 kcal Atomic # 16 Polarization: 68.89 SS G_CDS: -0.32 Total: 68.57 kcal Total: -80.70 0.83 -79.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345043452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.557 kcal (2) G-P(sol) polarization free energy of solvation -80.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds