Wall clock time and date at job start Sat Apr 11 2020 05:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 113.99584 * 2 1 4 4 C 1.53000 * 109.46956 * 179.97438 * 3 2 1 5 5 O 1.42903 * 109.47170 * 64.99691 * 4 3 2 6 6 C 1.42899 * 113.99997 * 180.02562 * 5 4 3 7 7 C 1.53003 * 109.47127 * 180.02562 * 6 5 4 8 8 N 1.46505 * 109.46952 * 64.99977 * 7 6 5 9 9 C 1.46502 * 119.99687 * 269.99958 * 8 7 6 10 10 C 1.34766 * 119.99986 * 90.00338 * 8 7 6 11 11 O 1.21555 * 120.00357 * 354.64726 * 10 8 7 12 12 C 1.47862 * 120.00051 * 174.64467 * 10 8 7 13 13 C 1.39673 * 120.10295 * 329.41698 * 12 10 8 14 14 C 1.38034 * 120.04008 * 180.02562 * 13 12 10 15 15 C 1.38183 * 120.24717 * 359.67722 * 14 13 12 16 16 C 1.39176 * 120.19635 * 0.59964 * 15 14 13 17 17 S 1.76198 * 120.01924 * 179.69562 * 16 15 14 18 18 C 1.76203 * 100.00208 * 264.83036 * 17 16 15 19 19 H 1.08000 * 119.99616 * 5.02524 * 18 17 16 20 20 C 1.38723 * 120.00431 * 185.02095 * 18 17 16 21 21 N 1.31623 * 119.99852 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00481 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47078 * 89.99807 * 22 20 18 24 24 H 1.48494 * 109.47572 * 210.00453 * 22 20 18 25 25 H 1.48499 * 109.46952 * 330.00463 * 22 20 18 26 26 C 1.38882 * 119.96177 * 359.42919 * 16 15 14 27 27 H 1.08998 * 109.47308 * 300.00136 * 1 2 3 28 28 H 1.08995 * 109.46834 * 60.00287 * 1 2 3 29 29 H 1.09004 * 109.46677 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47749 * 59.99655 * 3 2 1 31 31 H 1.08997 * 109.46932 * 299.99363 * 3 2 1 32 32 H 1.09001 * 109.47281 * 304.99773 * 4 3 2 33 33 H 1.08999 * 109.47379 * 184.99715 * 4 3 2 34 34 H 1.08996 * 109.47160 * 59.99859 * 6 5 4 35 35 H 1.09003 * 109.47018 * 299.99899 * 6 5 4 36 36 H 1.09006 * 109.47072 * 304.99909 * 7 6 5 37 37 H 1.09002 * 109.47047 * 184.99944 * 7 6 5 38 38 H 1.09006 * 109.46777 * 271.86644 * 9 8 7 39 39 H 1.08997 * 109.46968 * 31.86382 * 9 8 7 40 40 H 1.08994 * 109.46680 * 151.86821 * 9 8 7 41 41 H 1.08007 * 119.97903 * 0.02562 * 13 12 10 42 42 H 1.08009 * 119.87787 * 180.02562 * 14 13 12 43 43 H 1.07997 * 119.90077 * 180.29662 * 15 14 13 44 44 H 0.97005 * 120.00335 * 179.97438 * 21 20 18 45 45 H 1.08000 * 120.12279 * 180.25643 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 8 3.9658 0.5793 -1.2201 6 6 5.3822 0.4188 -1.3215 7 6 5.7267 -0.2348 -2.6613 8 7 5.3599 0.6691 -3.7543 9 6 4.0205 0.5998 -4.3438 10 6 6.2545 1.5643 -4.2175 11 8 7.3306 1.6892 -3.6661 12 6 5.9271 2.3945 -5.3963 13 6 5.0806 1.8975 -6.3899 14 6 4.7763 2.6735 -7.4902 15 6 5.3010 3.9461 -7.6111 16 6 6.1502 4.4492 -6.6299 17 16 6.8230 6.0695 -6.7927 18 6 8.3763 5.6833 -7.5296 19 1 8.6021 4.6653 -7.8111 20 6 9.3090 6.6866 -7.7483 21 7 9.0339 7.9270 -7.4048 22 14 10.9553 6.2772 -8.5302 23 1 10.8463 6.3991 -10.0062 24 1 11.9886 7.2194 -8.0306 25 1 11.3398 4.8874 -8.1754 26 6 6.4625 3.6756 -5.5196 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6885 1.8465 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.8508 0.5687 0.8427 33 1 3.9784 2.1767 0.0902 34 1 5.7354 -0.2134 -0.5069 35 1 5.8638 1.3947 -1.2592 36 1 5.1751 -1.1696 -2.7621 37 1 6.7968 -0.4383 -2.7017 38 1 4.0166 -0.1316 -5.1520 39 1 3.3024 0.3011 -3.5801 40 1 3.7460 1.5782 -4.7379 41 1 4.6639 0.9054 -6.2973 42 1 4.1210 2.2867 -8.2568 43 1 5.0554 4.5502 -8.4719 44 1 9.6862 8.6286 -7.5574 45 1 7.1178 4.0650 -4.7546 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345421622.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:30 Heat of formation + Delta-G solvation = -89.769084 kcal Electronic energy + Delta-G solvation = -26491.555228 eV Core-core repulsion = 22601.212883 eV Total energy + Delta-G solvation = -3890.342345 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.25317 -38.74225 -37.93462 -37.34586 -35.52742 -32.48717 -31.93921 -30.64335 -30.49101 -29.03612 -26.79247 -26.51491 -25.54489 -24.07128 -22.86544 -22.38791 -22.01045 -19.61123 -17.98686 -17.34636 -17.16930 -16.79703 -16.49358 -16.11167 -16.00468 -15.61910 -15.23905 -15.16816 -14.83090 -14.69271 -14.26678 -13.82804 -13.68889 -13.30636 -13.13397 -12.97884 -12.88861 -12.57306 -12.35387 -12.15732 -12.08403 -11.93703 -11.61834 -11.34220 -11.21719 -11.13950 -11.08124 -11.04850 -10.66432 -10.06012 -9.93911 -9.88098 -9.66965 -9.13946 -8.94512 -8.74183 -8.51183 -7.98021 -6.69625 -6.26714 -4.00462 1.27109 1.70554 2.89541 3.03250 3.21589 3.24795 3.30208 3.38024 3.44205 3.49969 4.08272 4.27036 4.61761 4.65103 4.79915 4.86700 4.96053 4.98495 4.99662 5.06947 5.08888 5.09929 5.15466 5.19044 5.25592 5.31830 5.34628 5.38904 5.44992 5.49581 5.50460 5.66823 5.76159 5.79123 5.91294 6.03432 6.30155 6.45509 6.63522 6.69402 6.75070 6.94164 6.97111 7.23351 7.39221 7.60191 8.26629 8.35418 9.19408 10.79982 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016852 B = 0.002319 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.124680 B =12073.652257 C =12249.366629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.063 3.937 4 C 0.064 3.936 5 O -0.377 6.377 6 C 0.045 3.955 7 C 0.123 3.877 8 N -0.610 5.610 9 C 0.077 3.923 10 C 0.563 3.437 11 O -0.536 6.536 12 C -0.151 4.151 13 C -0.099 4.099 14 C -0.143 4.143 15 C -0.058 4.058 16 C -0.107 4.107 17 S -0.037 6.037 18 C -0.518 4.518 19 H 0.076 0.924 20 C 0.073 3.927 21 N -0.871 5.871 22 Si 0.921 3.079 23 H -0.276 1.276 24 H -0.281 1.281 25 H -0.271 1.271 26 C -0.023 4.023 27 H 0.039 0.961 28 H 0.042 0.958 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.054 0.946 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.131 0.869 42 H 0.123 0.877 43 H 0.130 0.870 44 H 0.269 0.731 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.394 -16.707 11.828 26.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.013 4.013 4 C -0.013 4.013 5 O -0.296 6.296 6 C -0.033 4.033 7 C 0.000 4.000 8 N -0.343 5.343 9 C -0.066 4.066 10 C 0.353 3.647 11 O -0.413 6.413 12 C -0.156 4.156 13 C -0.117 4.117 14 C -0.162 4.162 15 C -0.079 4.079 16 C -0.217 4.217 17 S 0.198 5.802 18 C -0.665 4.665 19 H 0.094 0.906 20 C -0.136 4.136 21 N -0.507 5.507 22 Si 0.747 3.253 23 H -0.202 1.202 24 H -0.207 1.207 25 H -0.195 1.195 26 C -0.044 4.044 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.104 0.896 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.104 0.896 37 H 0.116 0.884 38 H 0.072 0.928 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.148 0.852 42 H 0.141 0.859 43 H 0.148 0.852 44 H 0.079 0.921 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -16.182 -15.595 12.274 25.607 hybrid contribution 1.397 -1.098 -0.537 1.856 sum -14.785 -16.693 11.737 25.200 Atomic orbital electron populations 1.22744 0.81104 1.02782 0.99946 1.87950 1.19556 1.27436 1.95398 1.22569 0.92427 0.85367 1.00977 1.22488 0.93200 0.97741 0.87851 1.87911 1.21948 1.81991 1.37786 1.22996 0.81751 1.00732 0.97829 1.21474 1.01954 0.92358 0.84236 1.47622 1.13995 1.36707 1.36006 1.22188 0.83240 1.02598 0.98553 1.18572 0.83566 0.79175 0.83344 1.90768 1.23756 1.67359 1.59418 1.19799 1.03122 0.96304 0.96360 1.21639 0.96397 0.99935 0.93764 1.21078 1.01995 0.95053 0.98123 1.21932 0.94086 0.94477 0.97368 1.22801 1.00100 1.03297 0.95527 1.83556 1.19211 0.96555 1.80927 1.22842 1.00586 0.97515 1.45565 0.90594 1.25001 0.98741 0.94515 0.95367 1.69988 1.35730 1.00044 1.44907 0.86119 0.81431 0.78591 0.79200 1.20174 1.20666 1.19517 1.21866 0.94460 0.91274 0.96840 0.94241 0.93927 0.89636 0.91907 0.92242 0.92593 0.91755 0.92439 0.92506 0.89628 0.88392 0.92767 0.90322 0.90125 0.85170 0.85918 0.85194 0.92101 0.84832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.38 -3.70 10.67 -40.08 -0.43 -4.13 16 3 C 0.06 0.51 6.32 37.16 0.23 0.75 16 4 C 0.06 0.57 6.32 37.16 0.23 0.80 16 5 O -0.38 -4.13 9.10 -40.08 -0.36 -4.49 16 6 C 0.04 0.47 6.28 37.16 0.23 0.70 16 7 C 0.12 1.32 5.78 -4.04 -0.02 1.30 16 8 N -0.61 -7.80 2.84 -182.68 -0.52 -8.32 16 9 C 0.08 0.77 8.60 59.85 0.51 1.29 16 10 C 0.56 9.50 7.42 -12.33 -0.09 9.41 16 11 O -0.54 -10.81 16.36 5.32 0.09 -10.73 16 12 C -0.15 -2.64 5.31 -105.00 -0.56 -3.19 16 13 C -0.10 -1.42 7.60 -39.12 -0.30 -1.71 16 14 C -0.14 -2.09 10.02 -39.68 -0.40 -2.49 16 15 C -0.06 -1.05 9.79 -39.25 -0.38 -1.43 16 16 C -0.11 -2.31 5.45 -39.00 -0.21 -2.52 16 17 S -0.04 -0.96 21.41 -107.50 -2.30 -3.27 16 18 C -0.52 -14.83 9.46 30.91 0.29 -14.54 16 19 H 0.08 2.17 7.79 -52.49 -0.41 1.77 16 20 C 0.07 2.06 5.49 -17.46 -0.10 1.97 16 21 N -0.87 -25.68 13.22 55.49 0.73 -24.95 16 22 Si 0.92 21.80 29.55 -169.99 -5.02 16.78 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 26 C -0.02 -0.47 9.35 -38.92 -0.36 -0.83 16 27 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.09 0.74 8.07 -51.93 -0.42 0.32 16 37 H 0.10 1.10 7.50 -51.93 -0.39 0.71 16 38 H 0.05 0.44 6.82 -51.93 -0.35 0.09 16 39 H 0.08 0.75 7.08 -51.93 -0.37 0.38 16 40 H 0.08 0.87 5.76 -51.93 -0.30 0.57 16 41 H 0.13 1.44 4.93 -52.48 -0.26 1.19 16 42 H 0.12 1.38 8.06 -52.48 -0.42 0.95 16 43 H 0.13 2.24 8.06 -52.49 -0.42 1.82 16 44 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 45 H 0.13 2.98 7.93 -52.49 -0.42 2.56 16 LS Contribution 392.26 15.07 5.91 5.91 Total: -1.00 -34.50 392.26 -8.40 -42.91 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -6.70 Total: -0.51 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: 0.20 Total: -9.21 kcal Atomic # 7 Polarization: -33.48 SS G_CDS: 0.22 Total: -33.27 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.71 Total: -19.35 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: -0.96 SS G_CDS: -2.30 Total: -3.27 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.50 -8.40 -42.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345421622.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.862 kcal (2) G-P(sol) polarization free energy of solvation -34.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds