Wall clock time and date at job start Sat Apr 11 2020 05:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 113.99584 * 2 1 4 4 C 1.53000 * 109.46956 * 179.97438 * 3 2 1 5 5 O 1.42903 * 109.47170 * 64.99691 * 4 3 2 6 6 C 1.42899 * 113.99997 * 180.02562 * 5 4 3 7 7 C 1.53003 * 109.47127 * 180.02562 * 6 5 4 8 8 N 1.46505 * 109.46952 * 64.99977 * 7 6 5 9 9 C 1.46502 * 119.99687 * 269.99958 * 8 7 6 10 10 C 1.34766 * 119.99986 * 90.00338 * 8 7 6 11 11 O 1.21555 * 120.00357 * 354.64726 * 10 8 7 12 12 C 1.47862 * 120.00051 * 174.64467 * 10 8 7 13 13 C 1.39673 * 120.10295 * 329.41698 * 12 10 8 14 14 C 1.38034 * 120.04008 * 180.02562 * 13 12 10 15 15 C 1.38183 * 120.24717 * 359.67722 * 14 13 12 16 16 C 1.39176 * 120.19635 * 0.59964 * 15 14 13 17 17 S 1.76198 * 120.01924 * 179.69562 * 16 15 14 18 18 C 1.76203 * 100.00208 * 264.83036 * 17 16 15 19 19 H 1.08000 * 119.99616 * 5.02524 * 18 17 16 20 20 C 1.38723 * 120.00431 * 185.02095 * 18 17 16 21 21 N 1.31623 * 119.99852 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00481 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47078 * 89.99807 * 22 20 18 24 24 H 1.48494 * 109.47572 * 210.00453 * 22 20 18 25 25 H 1.48499 * 109.46952 * 330.00463 * 22 20 18 26 26 C 1.38882 * 119.96177 * 359.42919 * 16 15 14 27 27 H 1.08998 * 109.47308 * 300.00136 * 1 2 3 28 28 H 1.08995 * 109.46834 * 60.00287 * 1 2 3 29 29 H 1.09004 * 109.46677 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47749 * 59.99655 * 3 2 1 31 31 H 1.08997 * 109.46932 * 299.99363 * 3 2 1 32 32 H 1.09001 * 109.47281 * 304.99773 * 4 3 2 33 33 H 1.08999 * 109.47379 * 184.99715 * 4 3 2 34 34 H 1.08996 * 109.47160 * 59.99859 * 6 5 4 35 35 H 1.09003 * 109.47018 * 299.99899 * 6 5 4 36 36 H 1.09006 * 109.47072 * 304.99909 * 7 6 5 37 37 H 1.09002 * 109.47047 * 184.99944 * 7 6 5 38 38 H 1.09006 * 109.46777 * 271.86644 * 9 8 7 39 39 H 1.08997 * 109.46968 * 31.86382 * 9 8 7 40 40 H 1.08994 * 109.46680 * 151.86821 * 9 8 7 41 41 H 1.08007 * 119.97903 * 0.02562 * 13 12 10 42 42 H 1.08009 * 119.87787 * 180.02562 * 14 13 12 43 43 H 1.07997 * 119.90077 * 180.29662 * 15 14 13 44 44 H 0.97005 * 120.00335 * 179.97438 * 21 20 18 45 45 H 1.08000 * 120.12279 * 180.25643 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 8 3.9658 0.5793 -1.2201 6 6 5.3822 0.4188 -1.3215 7 6 5.7267 -0.2348 -2.6613 8 7 5.3599 0.6691 -3.7543 9 6 4.0205 0.5998 -4.3438 10 6 6.2545 1.5643 -4.2175 11 8 7.3306 1.6892 -3.6661 12 6 5.9271 2.3945 -5.3963 13 6 5.0806 1.8975 -6.3899 14 6 4.7763 2.6735 -7.4902 15 6 5.3010 3.9461 -7.6111 16 6 6.1502 4.4492 -6.6299 17 16 6.8230 6.0695 -6.7927 18 6 8.3763 5.6833 -7.5296 19 1 8.6021 4.6653 -7.8111 20 6 9.3090 6.6866 -7.7483 21 7 9.0339 7.9270 -7.4048 22 14 10.9553 6.2772 -8.5302 23 1 10.8463 6.3991 -10.0062 24 1 11.9886 7.2194 -8.0306 25 1 11.3398 4.8874 -8.1754 26 6 6.4625 3.6756 -5.5196 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6885 1.8465 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.8508 0.5687 0.8427 33 1 3.9784 2.1767 0.0902 34 1 5.7354 -0.2134 -0.5069 35 1 5.8638 1.3947 -1.2592 36 1 5.1751 -1.1696 -2.7621 37 1 6.7968 -0.4383 -2.7017 38 1 4.0166 -0.1316 -5.1520 39 1 3.3024 0.3011 -3.5801 40 1 3.7460 1.5782 -4.7379 41 1 4.6639 0.9054 -6.2973 42 1 4.1210 2.2867 -8.2568 43 1 5.0554 4.5502 -8.4719 44 1 9.6862 8.6286 -7.5574 45 1 7.1178 4.0650 -4.7546 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345421622.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:29 Heat of formation + Delta-G solvation = -112.518431 kcal Electronic energy + Delta-G solvation = -26492.541714 eV Core-core repulsion = 22601.212883 eV Total energy + Delta-G solvation = -3891.328831 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.49212 -39.56608 -39.10611 -38.18573 -36.63970 -34.66497 -33.01068 -31.98704 -31.49245 -29.92872 -27.78925 -27.69694 -27.08982 -25.18858 -23.77126 -23.50448 -23.18697 -20.87360 -19.82333 -18.55469 -18.04238 -17.75723 -17.52885 -17.23977 -16.94495 -16.93228 -16.42394 -16.27287 -16.07945 -15.94000 -15.53623 -15.09931 -14.73844 -14.65200 -14.52083 -14.06074 -13.83991 -13.70459 -13.49010 -13.23675 -13.03413 -12.97823 -12.93730 -12.74358 -12.65906 -12.55376 -12.32513 -12.22715 -11.92658 -11.73817 -11.26476 -11.12077 -10.71940 -10.64184 -10.57211 -10.00826 -9.68427 -9.66060 -8.81100 -8.40399 -6.20166 -0.11527 0.25736 1.28156 1.36023 1.44055 1.58108 1.77624 1.93411 2.23218 2.63671 2.75424 2.85682 2.92249 3.39754 3.47117 3.95117 3.96920 3.98964 4.11808 4.13746 4.18262 4.31157 4.35154 4.43652 4.44127 4.44678 4.49960 4.57137 4.59553 4.63568 4.65732 4.73447 4.78026 4.83884 4.89253 4.92035 5.01694 5.23734 5.32640 5.37571 5.49477 5.51579 5.88179 6.10311 6.14775 6.23949 6.29325 6.99999 7.02904 8.66497 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016852 B = 0.002319 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.124680 B =12073.652257 C =12249.366629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.410 6.410 3 C 0.064 3.936 4 C 0.058 3.942 5 O -0.388 6.388 6 C 0.049 3.951 7 C 0.119 3.881 8 N -0.598 5.598 9 C 0.070 3.930 10 C 0.558 3.442 11 O -0.583 6.583 12 C -0.154 4.154 13 C -0.073 4.073 14 C -0.121 4.121 15 C -0.064 4.064 16 C -0.128 4.128 17 S -0.093 6.093 18 C -0.536 4.536 19 H 0.065 0.935 20 C 0.019 3.981 21 N -0.905 5.905 22 Si 0.991 3.009 23 H -0.261 1.261 24 H -0.271 1.271 25 H -0.271 1.271 26 C -0.048 4.048 27 H 0.051 0.949 28 H 0.046 0.954 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.029 0.971 36 H 0.117 0.883 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.178 0.822 42 H 0.176 0.824 43 H 0.135 0.865 44 H 0.274 0.726 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.396 -20.006 10.969 29.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.329 6.329 3 C -0.013 4.013 4 C -0.019 4.019 5 O -0.308 6.308 6 C -0.029 4.029 7 C -0.004 4.004 8 N -0.329 5.329 9 C -0.071 4.071 10 C 0.348 3.652 11 O -0.464 6.464 12 C -0.159 4.159 13 C -0.091 4.091 14 C -0.140 4.140 15 C -0.085 4.085 16 C -0.240 4.240 17 S 0.142 5.858 18 C -0.683 4.683 19 H 0.083 0.917 20 C -0.186 4.186 21 N -0.541 5.541 22 Si 0.813 3.187 23 H -0.185 1.185 24 H -0.196 1.196 25 H -0.196 1.196 26 C -0.070 4.070 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.113 0.887 30 H 0.101 0.899 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.047 0.953 36 H 0.135 0.865 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.093 0.907 41 H 0.195 0.805 42 H 0.193 0.807 43 H 0.153 0.847 44 H 0.083 0.917 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -18.247 -18.914 11.424 28.657 hybrid contribution 1.816 -0.220 -0.173 1.837 sum -16.431 -19.134 11.251 27.617 Atomic orbital electron populations 1.22906 0.79631 1.03735 1.00761 1.87902 1.21276 1.28158 1.95588 1.22615 0.91690 0.85170 1.01791 1.22647 0.93993 0.97868 0.87362 1.87874 1.21752 1.82224 1.38921 1.22914 0.81745 0.99697 0.98547 1.21680 1.02126 0.92984 0.83560 1.47699 1.14198 1.35248 1.35745 1.22431 0.81539 1.03260 0.99907 1.18568 0.83639 0.79769 0.83228 1.90743 1.25979 1.68957 1.60735 1.19919 1.03329 0.94900 0.97751 1.22163 0.93770 1.01403 0.91762 1.21571 1.00785 0.92818 0.98823 1.22056 0.93576 0.96350 0.96552 1.22467 1.02583 1.01163 0.97745 1.83404 1.19173 1.01998 1.81221 1.23052 1.01959 0.97180 1.46134 0.91715 1.25994 1.02592 0.94258 0.95733 1.70102 1.37151 1.01016 1.45874 0.85060 0.76553 0.78245 0.78848 1.18550 1.19560 1.19594 1.21546 0.95773 0.93303 0.96364 0.93031 0.93498 0.88695 0.89913 0.92582 0.91893 0.91605 0.90355 0.95259 0.86481 0.89211 0.89364 0.89281 0.90667 0.80514 0.80660 0.84688 0.91673 0.88427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.41 -7.13 10.67 -144.34 -1.54 -8.67 16 3 C 0.06 0.93 6.32 71.98 0.45 1.39 16 4 C 0.06 0.96 6.32 71.98 0.45 1.41 16 5 O -0.39 -7.89 9.10 -144.34 -1.31 -9.20 16 6 C 0.05 0.98 6.28 71.98 0.45 1.43 16 7 C 0.12 2.32 5.78 86.38 0.50 2.82 16 8 N -0.60 -14.01 2.84 -850.15 -2.41 -16.42 16 9 C 0.07 1.11 8.60 127.77 1.10 2.21 16 10 C 0.56 18.70 7.42 86.79 0.64 19.34 16 11 O -0.58 -24.55 16.36 -3.89 -0.06 -24.61 16 12 C -0.15 -5.29 5.31 -20.11 -0.11 -5.39 16 13 C -0.07 -1.80 7.60 22.57 0.17 -1.63 16 14 C -0.12 -3.02 10.02 22.21 0.22 -2.80 16 15 C -0.06 -2.28 9.79 22.48 0.22 -2.06 16 16 C -0.13 -5.78 5.45 22.65 0.12 -5.66 16 17 S -0.09 -5.14 21.41 -56.49 -1.21 -6.34 16 18 C -0.54 -32.15 9.46 67.94 0.64 -31.51 16 19 H 0.06 3.88 7.79 -2.91 -0.02 3.86 16 20 C 0.02 1.14 5.49 84.84 0.47 1.60 16 21 N -0.91 -55.18 13.22 21.63 0.29 -54.89 16 22 Si 0.99 45.61 29.55 68.60 2.03 47.64 16 23 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 24 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 25 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 26 C -0.05 -2.10 9.35 22.70 0.21 -1.89 16 27 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.12 1.59 8.07 -2.38 -0.02 1.57 16 37 H 0.09 1.94 7.50 -2.39 -0.02 1.93 16 38 H 0.09 0.87 6.82 -2.38 -0.02 0.86 16 39 H 0.09 1.33 7.08 -2.39 -0.02 1.31 16 40 H 0.07 1.31 5.76 -2.39 -0.01 1.30 16 41 H 0.18 2.76 4.93 -2.91 -0.01 2.75 16 42 H 0.18 2.69 8.06 -2.91 -0.02 2.67 16 43 H 0.14 4.56 8.06 -2.91 -0.02 4.54 16 44 H 0.27 15.45 8.31 -92.70 -0.77 14.68 16 45 H 0.10 4.84 7.93 -2.91 -0.02 4.82 16 Total: -1.00 -81.30 392.26 3.56 -77.74 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 0.98 Total: 13.98 kcal Atomic # 6 Polarization: -26.02 SS G_CDS: 6.80 Total: -19.22 kcal Atomic # 7 Polarization: -69.19 SS G_CDS: -2.13 Total: -71.31 kcal Atomic # 8 Polarization: -39.56 SS G_CDS: -2.92 Total: -42.48 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Atomic # 16 Polarization: -5.14 SS G_CDS: -1.21 Total: -6.34 kcal Total: -81.30 3.56 -77.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345421622.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.782 kcal (2) G-P(sol) polarization free energy of solvation -81.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds