Wall clock time and date at job start Sat Apr 11 2020 05:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46494 * 120.00106 * 2 1 4 4 C 1.53005 * 109.47112 * 274.99930 * 3 2 1 5 5 O 1.42900 * 109.46903 * 64.99872 * 4 3 2 6 6 C 1.35904 * 116.99559 * 180.02562 * 5 4 3 7 7 C 1.38727 * 120.05964 * 359.72015 * 6 5 4 8 8 C 1.38149 * 119.94473 * 179.74294 * 7 6 5 9 9 C 1.38265 * 120.05668 * 0.51681 * 8 7 6 10 10 C 1.38272 * 120.10679 * 359.76266 * 9 8 7 11 11 C 1.38144 * 120.05705 * 359.97438 * 10 9 8 12 12 S 1.65607 * 120.00028 * 179.97438 * 2 1 3 13 13 O 1.42102 * 104.27556 * 153.93004 * 12 2 1 14 14 O 1.42098 * 104.27465 * 26.06981 * 12 2 1 15 15 C 1.81401 * 104.44534 * 270.00056 * 12 2 1 16 16 C 1.53010 * 109.46704 * 184.14025 * 15 12 2 17 17 C 1.50700 * 115.54846 * 294.79756 * 16 15 12 18 18 H 1.08007 * 119.99743 * 95.18983 * 17 16 15 19 19 C 1.37873 * 120.00383 * 274.91445 * 17 16 15 20 20 N 1.31521 * 119.99920 * 6.52871 * 19 17 16 21 21 Si 1.86796 * 120.00170 * 186.53062 * 19 17 16 22 22 H 1.48508 * 109.47146 * 89.99984 * 21 19 17 23 23 H 1.48497 * 109.47182 * 209.99404 * 21 19 17 24 24 H 1.48498 * 109.47279 * 329.99874 * 21 19 17 25 25 C 1.52996 * 117.50073 * 80.47127 * 16 15 12 26 26 C 1.52997 * 117.49780 * 149.13454 * 16 15 12 27 27 H 1.08997 * 109.47018 * 270.00115 * 1 2 3 28 28 H 1.09001 * 109.47232 * 30.00526 * 1 2 3 29 29 H 1.09004 * 109.47025 * 150.00395 * 1 2 3 30 30 H 1.08997 * 109.47381 * 34.99698 * 3 2 1 31 31 H 1.08997 * 109.47732 * 154.99999 * 3 2 1 32 32 H 1.09001 * 109.47259 * 184.99897 * 4 3 2 33 33 H 1.08999 * 109.47031 * 304.99764 * 4 3 2 34 34 H 1.08003 * 120.02885 * 0.02562 * 7 6 5 35 35 H 1.08005 * 119.96850 * 180.27812 * 8 7 6 36 36 H 1.07994 * 119.94815 * 179.74517 * 9 8 7 37 37 H 1.08002 * 119.96802 * 180.02562 * 10 9 8 38 38 H 1.08005 * 120.02306 * 179.97438 * 11 10 9 39 39 H 1.08996 * 109.47333 * 64.14268 * 15 12 2 40 40 H 1.08994 * 109.47437 * 304.13506 * 15 12 2 41 41 H 0.96990 * 119.99820 * 185.07344 * 20 19 17 42 42 H 1.08989 * 117.50053 * 215.00278 * 25 16 15 43 43 H 1.09000 * 117.49601 * 0.02562 * 25 16 15 44 44 H 1.09003 * 117.50042 * 359.97191 * 26 16 15 45 45 H 1.08999 * 117.50207 * 144.97573 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3436 1.7732 -1.4371 5 8 1.0529 2.0818 -1.9671 6 6 1.0050 2.5456 -3.2436 7 6 2.1766 2.7060 -3.9691 8 6 2.1247 3.1726 -5.2684 9 6 0.9074 3.4898 -5.8422 10 6 -0.2612 3.3363 -5.1192 11 6 -0.2151 2.8650 -3.8215 12 16 2.2930 -1.4342 0.0006 13 8 3.5395 -1.1194 -0.6047 14 8 1.3969 -2.3564 -0.6041 15 6 2.5193 -1.8253 1.7575 16 6 3.3698 -3.0900 1.8929 17 6 2.7447 -4.3537 1.3606 18 1 2.9677 -4.6853 0.3572 19 6 1.8925 -5.0896 2.1564 20 7 1.5237 -4.6252 3.3303 21 14 1.2619 -6.7463 1.5673 22 1 2.1945 -7.8155 2.0061 23 1 -0.0839 -6.9967 2.1428 24 1 1.1739 -6.7439 0.0850 25 6 4.8861 -2.9397 1.7555 26 6 4.2647 -3.2106 3.1280 27 1 -0.3633 0.0000 1.0276 28 1 -0.3634 0.8899 -0.5139 29 1 -0.3633 -0.8901 -0.5138 30 1 1.6502 2.0043 0.5894 31 1 3.1857 1.1177 0.4343 32 1 2.9640 2.6694 -1.4462 33 1 2.8119 1.0010 -2.0474 34 1 3.1280 2.4619 -3.5201 35 1 3.0362 3.2933 -5.8351 36 1 0.8692 3.8583 -6.8566 37 1 -1.2109 3.5844 -5.5697 38 1 -1.1282 2.7457 -3.2571 39 1 1.5468 -1.9901 2.2212 40 1 3.0220 -0.9947 2.2528 41 1 0.9845 -5.1736 3.9211 42 1 5.4316 -3.7548 1.2801 43 1 5.2779 -1.9398 1.5690 44 1 4.2480 -2.3887 3.8438 45 1 4.4012 -4.2038 3.5557 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346441195.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:44 Heat of formation + Delta-G solvation = -54.133082 kcal Electronic energy + Delta-G solvation = -27769.050931 eV Core-core repulsion = 23880.253879 eV Total energy + Delta-G solvation = -3888.797052 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.19526 -37.77810 -36.78452 -36.34534 -35.86897 -35.05475 -32.04930 -31.30011 -30.54728 -29.26769 -28.19188 -25.85417 -25.41262 -23.55117 -22.49503 -21.62328 -21.23490 -19.57731 -18.59133 -18.15604 -17.02820 -16.65803 -16.28467 -16.10960 -15.91704 -15.29495 -15.10693 -14.67449 -14.62323 -14.13867 -13.95787 -13.81280 -13.56678 -13.18054 -13.15999 -12.77496 -12.54261 -12.25251 -11.94244 -11.84470 -11.81441 -11.72994 -11.34064 -11.30075 -11.11193 -11.03539 -10.90876 -10.86535 -10.73120 -10.58671 -10.47511 -10.12627 -9.72337 -9.16430 -8.98192 -8.85958 -8.56322 -8.31550 -8.09373 -6.15585 -4.26100 1.00272 1.18086 1.31147 3.07528 3.29355 3.31098 3.36132 3.44205 3.64860 4.37719 4.53799 4.64780 4.72859 4.77499 4.85319 4.92777 4.97638 5.10343 5.13776 5.17422 5.22190 5.24599 5.33007 5.43955 5.58898 5.64509 5.71233 5.84068 5.84778 5.95481 6.12147 6.16552 6.20509 6.25807 6.26085 6.35849 6.36670 6.58848 6.63376 6.68554 6.80881 6.96858 7.22230 7.33307 7.36854 7.79370 8.18174 8.80226 9.45881 10.92826 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019695 B = 0.002935 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.354623 B = 9536.973935 C =10009.145026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -1.011 6.011 3 C 0.131 3.869 4 C 0.037 3.963 5 O -0.307 6.307 6 C 0.134 3.866 7 C -0.211 4.211 8 C -0.080 4.080 9 C -0.165 4.165 10 C -0.083 4.083 11 C -0.156 4.156 12 S 2.603 3.397 13 O -0.974 6.974 14 O -0.944 6.944 15 C -0.553 4.553 16 C 0.042 3.958 17 C -0.514 4.514 18 H 0.068 0.932 19 C 0.081 3.919 20 N -0.874 5.874 21 Si 0.890 3.110 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.267 1.267 25 C -0.209 4.209 26 C -0.140 4.140 27 H 0.050 0.950 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.129 0.871 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.134 0.866 40 H 0.097 0.903 41 H 0.263 0.737 42 H 0.086 0.914 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.225 17.674 -8.911 19.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.846 5.846 3 C 0.004 3.996 4 C -0.039 4.039 5 O -0.221 6.221 6 C 0.089 3.911 7 C -0.230 4.230 8 C -0.099 4.099 9 C -0.183 4.183 10 C -0.101 4.101 11 C -0.174 4.174 12 S 2.700 3.300 13 O -0.964 6.964 14 O -0.934 6.934 15 C -0.686 4.686 16 C 0.040 3.960 17 C -0.551 4.551 18 H 0.086 0.914 19 C -0.124 4.124 20 N -0.510 5.510 21 Si 0.717 3.283 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.191 1.191 25 C -0.246 4.246 26 C -0.179 4.179 27 H 0.068 0.932 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.120 0.880 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.147 0.853 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.145 0.855 38 H 0.148 0.852 39 H 0.152 0.848 40 H 0.115 0.885 41 H 0.072 0.928 42 H 0.105 0.895 43 H 0.093 0.907 44 H 0.085 0.915 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.337 17.186 -9.427 19.647 hybrid contribution -0.221 -0.669 0.548 0.892 sum -1.558 16.517 -8.880 18.817 Atomic orbital electron populations 1.21555 0.78574 1.04309 1.01481 1.57797 1.15471 1.20964 1.90402 1.21234 0.97850 0.86547 0.93933 1.23508 0.83451 1.00412 0.96575 1.86084 1.31903 1.78908 1.25172 1.19111 0.94153 0.93532 0.84344 1.21355 0.97796 1.07202 0.96613 1.20961 0.98039 0.96644 0.94214 1.21038 0.92600 1.04304 1.00407 1.20957 0.98483 0.97337 0.93294 1.20465 0.96042 1.04878 0.96037 1.05399 0.73554 0.72070 0.78932 1.93477 1.44458 1.83289 1.75186 1.93530 1.64317 1.60974 1.74599 1.30029 1.10725 1.06039 1.21834 1.18298 0.85921 0.91194 1.00614 1.20553 1.27193 1.06447 1.00880 0.91360 1.24940 0.94403 0.98058 0.94997 1.70009 1.35710 1.36105 1.09170 0.86596 0.78219 0.83633 0.79889 1.20450 1.20962 1.19083 1.23204 0.98193 1.00763 1.02460 1.22544 1.04697 1.00855 0.89834 0.93164 0.90443 0.89964 0.89537 0.88035 0.91124 0.90694 0.85308 0.85907 0.86119 0.85545 0.85243 0.84820 0.88465 0.92760 0.89506 0.90708 0.91540 0.89531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.22 10.46 59.85 0.63 1.84 16 2 N -1.01 -15.66 3.10 -121.76 -0.38 -16.03 16 3 C 0.13 1.59 5.69 -4.04 -0.02 1.56 16 4 C 0.04 0.45 5.08 37.16 0.19 0.64 16 5 O -0.31 -4.02 8.51 -19.44 -0.17 -4.18 16 6 C 0.13 1.69 6.69 -39.22 -0.26 1.42 16 7 C -0.21 -2.42 9.04 -39.43 -0.36 -2.78 16 8 C -0.08 -0.80 10.04 -39.60 -0.40 -1.20 16 9 C -0.17 -1.54 10.04 -39.56 -0.40 -1.93 16 10 C -0.08 -0.78 10.04 -39.60 -0.40 -1.18 16 11 C -0.16 -1.73 9.99 -39.43 -0.39 -2.13 16 12 S 2.60 52.67 5.13 -107.50 -0.55 52.12 16 13 O -0.97 -20.51 16.76 -57.54 -0.96 -21.47 16 14 O -0.94 -22.77 16.13 -57.54 -0.93 -23.70 16 15 C -0.55 -11.54 6.03 37.16 0.22 -11.31 16 16 C 0.04 1.02 1.33 -155.66 -0.21 0.81 16 17 C -0.51 -14.08 8.10 -34.44 -0.28 -14.36 16 18 H 0.07 1.92 7.82 -52.48 -0.41 1.51 16 19 C 0.08 2.21 5.39 -17.82 -0.10 2.11 16 20 N -0.87 -24.06 12.93 55.43 0.72 -23.34 16 21 Si 0.89 21.43 29.55 -169.99 -5.02 16.41 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 25 C -0.21 -4.52 9.96 -26.69 -0.27 -4.79 16 26 C -0.14 -3.16 9.44 -26.69 -0.25 -3.41 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.08 0.96 6.67 -51.93 -0.35 0.61 16 29 H 0.08 1.30 6.91 -51.93 -0.36 0.94 16 30 H 0.09 0.83 8.11 -51.93 -0.42 0.41 16 31 H 0.10 1.11 7.61 -51.93 -0.40 0.71 16 32 H 0.07 0.66 7.65 -51.93 -0.40 0.26 16 33 H 0.07 1.05 7.44 -51.93 -0.39 0.66 16 34 H 0.13 1.35 6.30 -52.48 -0.33 1.02 16 35 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 36 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 39 H 0.13 2.93 8.14 -51.93 -0.42 2.51 16 40 H 0.10 1.68 8.09 -51.93 -0.42 1.26 16 41 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 42 H 0.09 1.86 8.14 -51.94 -0.42 1.44 16 43 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 44 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 45 H 0.09 2.06 8.14 -51.93 -0.42 1.64 16 LS Contribution 386.75 15.07 5.83 5.83 Total: -1.00 -33.10 386.75 -10.58 -43.68 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -6.83 Total: 5.38 kcal Atomic # 6 Polarization: -32.40 SS G_CDS: -2.29 Total: -34.69 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.34 Total: -39.38 kcal Atomic # 8 Polarization: -47.29 SS G_CDS: -2.06 Total: -49.35 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 52.67 SS G_CDS: -0.55 Total: 52.12 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.10 -10.58 -43.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346441195.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.452 kcal (2) G-P(sol) polarization free energy of solvation -33.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds