Wall clock time and date at job start Sat Apr 11 2020 05:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99716 * 2 1 4 4 C 1.50707 * 109.46848 * 180.02562 * 3 2 1 5 5 C 1.38251 * 119.99910 * 354.78272 * 4 3 2 6 6 C 1.38214 * 120.00049 * 179.97438 * 5 4 3 7 7 C 1.38262 * 119.99613 * 0.02562 * 6 5 4 8 8 C 1.38204 * 120.00052 * 359.97438 * 7 6 5 9 9 C 1.38214 * 119.99823 * 174.50832 * 4 3 2 10 10 S 1.76203 * 119.99816 * 359.97438 * 9 4 3 11 11 O 1.42100 * 106.40095 * 279.72883 * 10 9 4 12 12 O 1.42099 * 106.40264 * 52.64978 * 10 9 4 13 13 N 1.65598 * 107.21530 * 166.18877 * 10 9 4 14 14 C 1.46498 * 120.00082 * 266.67788 * 13 10 9 15 15 C 1.50700 * 109.47480 * 94.99869 * 14 13 10 16 16 H 1.07999 * 119.99709 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00299 * 179.97438 * 15 14 13 18 18 N 1.31509 * 120.00246 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00185 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47295 * 90.00085 * 19 17 15 21 21 H 1.48494 * 109.47431 * 210.00756 * 19 17 15 22 22 H 1.48501 * 109.47051 * 330.00408 * 19 17 15 23 23 C 1.46498 * 120.00317 * 86.67802 * 13 10 9 24 24 C 1.53001 * 109.47124 * 95.10539 * 23 13 10 25 25 C 1.53001 * 117.50450 * 243.74997 * 24 23 13 26 26 C 1.53003 * 117.49991 * 175.09043 * 24 23 13 27 27 H 1.09002 * 109.47095 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47089 * 299.99646 * 1 2 3 29 29 H 1.08999 * 109.47515 * 59.99890 * 1 2 3 30 30 H 1.08996 * 109.47204 * 299.99921 * 3 2 1 31 31 H 1.09001 * 109.47033 * 60.00354 * 3 2 1 32 32 H 1.08003 * 120.00162 * 0.02562 * 5 4 3 33 33 H 1.07997 * 120.00494 * 180.02562 * 6 5 4 34 34 H 1.08002 * 119.99672 * 179.97438 * 7 6 5 35 35 H 1.08010 * 120.00096 * 179.97438 * 8 7 6 36 36 H 1.09000 * 109.47561 * 215.00416 * 14 13 10 37 37 H 1.09003 * 109.47405 * 334.99914 * 14 13 10 38 38 H 0.97001 * 120.00304 * 179.97438 * 18 17 15 39 39 H 1.08996 * 109.47844 * 215.11079 * 23 13 10 40 40 H 1.09004 * 109.47222 * 335.11148 * 23 13 10 41 41 H 1.08997 * 115.54969 * 29.42275 * 24 23 13 42 42 H 1.08999 * 117.49237 * 0.02562 * 25 24 23 43 43 H 1.09001 * 117.50299 * 145.01816 * 25 24 23 44 44 H 1.09002 * 117.50133 * 214.98694 * 26 24 23 45 45 H 1.09007 * 117.49606 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.1075 -0.0567 0.1078 6 6 5.4853 -0.1659 0.1067 7 6 6.2685 0.9683 -0.0023 8 6 5.6737 2.2110 -0.1107 9 6 4.2955 2.3198 -0.1153 10 16 3.5370 3.9035 -0.2614 11 8 3.1461 4.0372 -1.6210 12 8 2.6260 4.0137 0.8236 13 7 4.7153 5.0372 0.0002 14 6 4.9236 5.5804 1.3447 15 6 6.0178 4.8074 2.0349 16 1 6.5092 3.9933 1.5230 17 6 6.3922 5.1403 3.3194 18 7 5.7942 6.1320 3.9426 19 14 7.7491 4.1826 4.1745 20 1 9.0595 4.8219 3.8926 21 1 7.5049 4.1791 5.6393 22 1 7.7615 2.7855 3.6715 23 6 5.5494 5.4971 -1.1128 24 6 4.9577 6.7816 -1.6968 25 6 4.4603 6.7367 -3.1429 26 6 5.7498 7.4866 -2.7997 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.6886 1.8464 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 3.4957 -0.9427 0.1925 33 1 5.9502 -1.1371 0.1909 34 1 7.3452 0.8830 -0.0028 35 1 6.2856 3.0971 -0.1954 36 1 5.2099 6.6296 1.2725 37 1 4.0007 5.4944 1.9184 38 1 6.0574 6.3659 4.8464 39 1 6.5595 5.6931 -0.7532 40 1 5.5814 4.7282 -1.8848 41 1 4.4070 7.4072 -0.9944 42 1 4.5542 5.7919 -3.6782 43 1 3.5825 7.3329 -3.3920 44 1 5.7200 8.5760 -2.8231 45 1 6.6923 7.0350 -3.1097 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351999315.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:54 Heat of formation + Delta-G solvation = -61.736354 kcal Electronic energy + Delta-G solvation = -28737.563777 eV Core-core repulsion = 24848.437022 eV Total energy + Delta-G solvation = -3889.126755 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -39.34946 -37.68881 -37.49551 -36.57205 -35.31394 -34.93881 -32.47313 -32.04869 -30.96598 -27.88166 -27.31482 -25.66704 -25.29836 -22.93157 -22.63538 -22.03709 -21.35347 -20.30111 -18.54522 -17.48453 -17.02542 -16.46738 -16.35049 -16.00601 -15.88112 -15.67079 -14.87934 -14.64692 -14.60402 -14.35991 -14.23891 -13.82357 -13.57624 -13.25616 -12.70408 -12.58959 -12.43392 -12.13351 -12.06802 -11.81770 -11.55620 -11.52477 -11.45121 -11.28788 -11.20364 -11.15570 -11.07584 -10.84416 -10.56874 -10.28063 -10.13820 -10.10432 -9.91517 -9.71476 -9.53739 -9.04880 -8.57379 -8.51331 -8.15149 -6.13333 -4.19938 0.99604 1.10967 1.52708 3.23548 3.31439 3.32583 3.44902 3.57613 3.73191 4.12888 4.18535 4.35229 4.70704 4.99851 5.04906 5.06985 5.16875 5.18962 5.20231 5.24357 5.27039 5.33235 5.34273 5.47473 5.52021 5.55432 5.58150 5.70236 5.79458 5.88182 5.93031 6.10112 6.13905 6.17881 6.33248 6.37722 6.37927 6.47599 6.55962 6.64690 7.00606 7.08239 7.27259 7.37609 7.57728 7.82526 8.10133 8.82780 9.46438 10.94893 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008271 B = 0.005890 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3384.560711 B = 4752.914486 C = 6523.167719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.382 6.382 3 C 0.066 3.934 4 C 0.004 3.996 5 C -0.121 4.121 6 C -0.077 4.077 7 C -0.141 4.141 8 C -0.013 4.013 9 C -0.656 4.656 10 S 2.686 3.314 11 O -0.970 6.970 12 O -0.956 6.956 13 N -0.978 5.978 14 C 0.243 3.757 15 C -0.545 4.545 16 H 0.065 0.935 17 C 0.068 3.932 18 N -0.888 5.888 19 Si 0.890 3.110 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.272 1.272 23 C 0.158 3.842 24 C -0.165 4.165 25 C -0.175 4.175 26 C -0.180 4.180 27 H 0.088 0.912 28 H 0.047 0.953 29 H 0.044 0.956 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.137 0.863 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.144 0.856 36 H 0.045 0.955 37 H 0.054 0.946 38 H 0.265 0.735 39 H 0.090 0.910 40 H 0.068 0.932 41 H 0.109 0.891 42 H 0.096 0.904 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.776 -7.428 -10.836 13.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.301 6.301 3 C -0.011 4.011 4 C 0.003 3.997 5 C -0.140 4.140 6 C -0.095 4.095 7 C -0.160 4.160 8 C -0.032 4.032 9 C -0.740 4.740 10 S 2.775 3.225 11 O -0.960 6.960 12 O -0.946 6.946 13 N -0.817 5.817 14 C 0.122 3.878 15 C -0.584 4.584 16 H 0.083 0.917 17 C -0.136 4.136 18 N -0.526 5.526 19 Si 0.717 3.283 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.197 1.197 23 C 0.032 3.968 24 C -0.185 4.185 25 C -0.212 4.212 26 C -0.218 4.218 27 H 0.107 0.893 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.114 0.886 32 H 0.154 0.846 33 H 0.144 0.856 34 H 0.146 0.854 35 H 0.162 0.838 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.108 0.892 40 H 0.086 0.914 41 H 0.127 0.873 42 H 0.115 0.885 43 H 0.107 0.893 44 H 0.109 0.891 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.537 -7.355 -10.812 13.546 hybrid contribution 1.255 -0.756 0.890 1.714 sum -2.282 -8.110 -9.922 13.016 Atomic orbital electron populations 1.22817 0.80497 1.02886 1.00685 1.87799 1.20099 1.26573 1.95643 1.21822 0.90257 0.86196 1.02806 1.19085 0.93125 0.93026 0.94488 1.20986 0.94673 0.97307 1.01044 1.21367 0.93851 0.98618 0.95639 1.21264 1.00174 0.92723 1.01841 1.20990 0.92222 0.98821 0.91155 1.30853 1.04847 1.21773 1.16565 1.02192 0.73822 0.73156 0.73377 1.93556 1.81008 1.86134 1.35292 1.93559 1.60247 1.85949 1.54877 1.57312 1.53119 1.54098 1.17187 1.19312 0.98265 0.95410 0.74854 1.21584 1.19903 1.17447 0.99459 0.91738 1.24902 0.96551 0.95028 0.97093 1.69920 1.41330 1.28088 1.13222 0.86621 0.82088 0.80497 0.79046 1.20522 1.21061 1.19711 1.20745 0.95293 0.93545 0.87223 1.22828 1.03914 0.99997 0.91739 1.23010 0.97283 1.02260 0.98631 1.22929 0.95893 0.99071 1.03915 0.89324 0.93434 0.93709 0.91413 0.88609 0.84560 0.85619 0.85401 0.83826 0.93717 0.92776 0.92554 0.89180 0.91398 0.87265 0.88527 0.89313 0.89117 0.88924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.38 -5.56 9.20 -35.23 -0.32 -5.88 16 3 C 0.07 1.09 4.96 36.01 0.18 1.27 16 4 C 0.00 0.08 5.87 -104.62 -0.61 -0.54 16 5 C -0.12 -1.90 9.37 -39.59 -0.37 -2.27 16 6 C -0.08 -1.09 10.05 -39.58 -0.40 -1.48 16 7 C -0.14 -2.15 10.05 -39.58 -0.40 -2.55 16 8 C -0.01 -0.23 8.75 -39.59 -0.35 -0.58 16 9 C -0.66 -12.41 5.83 -39.58 -0.23 -12.64 16 10 S 2.69 54.17 4.63 -107.50 -0.50 53.67 16 11 O -0.97 -19.47 17.11 -57.17 -0.98 -20.45 16 12 O -0.96 -21.81 14.81 -57.17 -0.85 -22.66 16 13 N -0.98 -19.52 1.93 -115.66 -0.22 -19.74 16 14 C 0.24 5.82 5.42 -5.19 -0.03 5.79 16 15 C -0.54 -13.85 9.38 -34.44 -0.32 -14.18 16 16 H 0.06 1.54 5.54 -52.49 -0.29 1.25 16 17 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 18 N -0.89 -25.00 13.29 55.43 0.74 -24.26 16 19 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 23 C 0.16 2.64 4.82 -4.04 -0.02 2.62 16 24 C -0.16 -2.57 6.01 -90.62 -0.54 -3.11 16 25 C -0.17 -2.43 10.18 -26.69 -0.27 -2.70 16 26 C -0.18 -2.28 10.25 -26.69 -0.27 -2.55 16 27 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 1.08 7.90 -51.93 -0.41 0.67 16 31 H 0.10 1.65 7.04 -51.93 -0.37 1.29 16 32 H 0.14 1.88 7.02 -52.48 -0.37 1.52 16 33 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 35 H 0.14 2.42 5.33 -52.48 -0.28 2.14 16 36 H 0.04 1.10 8.11 -51.93 -0.42 0.68 16 37 H 0.05 1.44 6.89 -51.93 -0.36 1.08 16 38 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.09 1.45 8.11 -51.93 -0.42 1.03 16 40 H 0.07 1.01 7.43 -51.93 -0.39 0.63 16 41 H 0.11 1.81 8.14 -51.93 -0.42 1.39 16 42 H 0.10 1.34 8.03 -51.93 -0.42 0.92 16 43 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 44 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 382.05 15.07 5.76 5.76 Total: -1.00 -31.31 382.05 -10.68 -41.99 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -6.66 Total: 5.85 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: -2.62 Total: -29.80 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: 0.51 Total: -44.01 kcal Atomic # 8 Polarization: -46.84 SS G_CDS: -2.15 Total: -48.99 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 54.17 SS G_CDS: -0.50 Total: 53.67 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.31 -10.68 -41.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351999315.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.746 kcal (2) G-P(sol) polarization free energy of solvation -31.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds