Wall clock time and date at job start Sat Apr 11 2020 05:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99716 * 2 1 4 4 C 1.50707 * 109.46848 * 180.02562 * 3 2 1 5 5 C 1.38251 * 119.99910 * 354.78272 * 4 3 2 6 6 C 1.38214 * 120.00049 * 179.97438 * 5 4 3 7 7 C 1.38262 * 119.99613 * 0.02562 * 6 5 4 8 8 C 1.38204 * 120.00052 * 359.97438 * 7 6 5 9 9 C 1.38214 * 119.99823 * 174.50832 * 4 3 2 10 10 S 1.76203 * 119.99816 * 359.97438 * 9 4 3 11 11 O 1.42100 * 106.40095 * 279.72883 * 10 9 4 12 12 O 1.42099 * 106.40264 * 52.64978 * 10 9 4 13 13 N 1.65598 * 107.21530 * 166.18877 * 10 9 4 14 14 C 1.46498 * 120.00082 * 266.67788 * 13 10 9 15 15 C 1.50700 * 109.47480 * 94.99869 * 14 13 10 16 16 H 1.07999 * 119.99709 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00299 * 179.97438 * 15 14 13 18 18 N 1.31509 * 120.00246 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00185 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47295 * 90.00085 * 19 17 15 21 21 H 1.48494 * 109.47431 * 210.00756 * 19 17 15 22 22 H 1.48501 * 109.47051 * 330.00408 * 19 17 15 23 23 C 1.46498 * 120.00317 * 86.67802 * 13 10 9 24 24 C 1.53001 * 109.47124 * 95.10539 * 23 13 10 25 25 C 1.53001 * 117.50450 * 243.74997 * 24 23 13 26 26 C 1.53003 * 117.49991 * 175.09043 * 24 23 13 27 27 H 1.09002 * 109.47095 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47089 * 299.99646 * 1 2 3 29 29 H 1.08999 * 109.47515 * 59.99890 * 1 2 3 30 30 H 1.08996 * 109.47204 * 299.99921 * 3 2 1 31 31 H 1.09001 * 109.47033 * 60.00354 * 3 2 1 32 32 H 1.08003 * 120.00162 * 0.02562 * 5 4 3 33 33 H 1.07997 * 120.00494 * 180.02562 * 6 5 4 34 34 H 1.08002 * 119.99672 * 179.97438 * 7 6 5 35 35 H 1.08010 * 120.00096 * 179.97438 * 8 7 6 36 36 H 1.09000 * 109.47561 * 215.00416 * 14 13 10 37 37 H 1.09003 * 109.47405 * 334.99914 * 14 13 10 38 38 H 0.97001 * 120.00304 * 179.97438 * 18 17 15 39 39 H 1.08996 * 109.47844 * 215.11079 * 23 13 10 40 40 H 1.09004 * 109.47222 * 335.11148 * 23 13 10 41 41 H 1.08997 * 115.54969 * 29.42275 * 24 23 13 42 42 H 1.08999 * 117.49237 * 0.02562 * 25 24 23 43 43 H 1.09001 * 117.50299 * 145.01816 * 25 24 23 44 44 H 1.09002 * 117.50133 * 214.98694 * 26 24 23 45 45 H 1.09007 * 117.49606 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.1075 -0.0567 0.1078 6 6 5.4853 -0.1659 0.1067 7 6 6.2685 0.9683 -0.0023 8 6 5.6737 2.2110 -0.1107 9 6 4.2955 2.3198 -0.1153 10 16 3.5370 3.9035 -0.2614 11 8 3.1461 4.0372 -1.6210 12 8 2.6260 4.0137 0.8236 13 7 4.7153 5.0372 0.0002 14 6 4.9236 5.5804 1.3447 15 6 6.0178 4.8074 2.0349 16 1 6.5092 3.9933 1.5230 17 6 6.3922 5.1403 3.3194 18 7 5.7942 6.1320 3.9426 19 14 7.7491 4.1826 4.1745 20 1 9.0595 4.8219 3.8926 21 1 7.5049 4.1791 5.6393 22 1 7.7615 2.7855 3.6715 23 6 5.5494 5.4971 -1.1128 24 6 4.9577 6.7816 -1.6968 25 6 4.4603 6.7367 -3.1429 26 6 5.7498 7.4866 -2.7997 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.6886 1.8464 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 3.4957 -0.9427 0.1925 33 1 5.9502 -1.1371 0.1909 34 1 7.3452 0.8830 -0.0028 35 1 6.2856 3.0971 -0.1954 36 1 5.2099 6.6296 1.2725 37 1 4.0007 5.4944 1.9184 38 1 6.0574 6.3659 4.8464 39 1 6.5595 5.6931 -0.7532 40 1 5.5814 4.7282 -1.8848 41 1 4.4070 7.4072 -0.9944 42 1 4.5542 5.7919 -3.6782 43 1 3.5825 7.3329 -3.3920 44 1 5.7200 8.5760 -2.8231 45 1 6.6923 7.0350 -3.1097 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351999315.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:53 Heat of formation + Delta-G solvation = -80.582019 kcal Electronic energy + Delta-G solvation = -28738.380986 eV Core-core repulsion = 24848.437022 eV Total energy + Delta-G solvation = -3889.943964 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.56688 -38.96644 -38.63489 -38.22581 -36.96534 -36.49271 -34.38869 -33.26509 -32.21580 -29.65139 -28.36783 -27.13249 -26.54881 -24.44888 -24.18287 -23.10588 -22.64618 -21.58901 -20.05396 -18.93170 -18.61623 -18.24327 -17.60281 -17.33962 -17.16561 -17.06446 -16.42672 -16.07979 -15.77824 -15.66846 -15.54649 -15.10952 -15.04802 -14.44839 -14.38379 -14.02256 -13.80908 -13.49033 -13.34207 -13.24546 -13.18929 -13.10848 -12.92712 -12.90527 -12.52242 -12.49364 -12.39298 -12.28072 -12.22860 -11.94539 -11.77396 -11.50194 -11.18577 -10.99792 -10.73048 -10.55458 -10.31391 -9.85200 -9.79477 -8.15626 -6.28586 -0.56036 -0.18199 0.28543 1.42777 1.44904 1.53742 1.89074 2.43168 2.47185 2.50204 2.63750 2.99298 3.17159 3.49200 3.58451 3.83681 3.87081 3.90528 3.97264 4.07699 4.11683 4.17330 4.29385 4.36126 4.42648 4.44718 4.47896 4.52700 4.70040 4.77681 4.82716 4.88617 4.92276 5.02905 5.10611 5.12323 5.22999 5.30284 5.34735 5.35094 5.37224 5.48963 5.75742 5.87915 5.90255 5.93459 6.09984 6.82627 7.41425 8.92995 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008271 B = 0.005890 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3384.560711 B = 4752.914486 C = 6523.167719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.388 6.388 3 C 0.067 3.933 4 C -0.020 4.020 5 C -0.125 4.125 6 C -0.064 4.064 7 C -0.142 4.142 8 C -0.032 4.032 9 C -0.676 4.676 10 S 2.691 3.309 11 O -0.976 6.976 12 O -0.994 6.994 13 N -0.979 5.979 14 C 0.259 3.741 15 C -0.546 4.546 16 H 0.081 0.919 17 C 0.012 3.988 18 N -0.928 5.928 19 Si 0.953 3.047 20 H -0.267 1.267 21 H -0.290 1.290 22 H -0.261 1.261 23 C 0.154 3.846 24 C -0.196 4.196 25 C -0.176 4.176 26 C -0.153 4.153 27 H 0.118 0.882 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.154 0.846 33 H 0.170 0.830 34 H 0.161 0.839 35 H 0.144 0.856 36 H 0.031 0.969 37 H 0.018 0.982 38 H 0.264 0.736 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.098 0.902 43 H 0.094 0.906 44 H 0.104 0.896 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.677 -9.909 -12.034 15.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.307 6.307 3 C -0.010 4.010 4 C -0.022 4.022 5 C -0.143 4.143 6 C -0.082 4.082 7 C -0.161 4.161 8 C -0.051 4.051 9 C -0.764 4.764 10 S 2.783 3.217 11 O -0.966 6.966 12 O -0.985 6.985 13 N -0.817 5.817 14 C 0.136 3.864 15 C -0.585 4.585 16 H 0.099 0.901 17 C -0.187 4.187 18 N -0.568 5.568 19 Si 0.778 3.222 20 H -0.193 1.193 21 H -0.217 1.217 22 H -0.185 1.185 23 C 0.028 3.972 24 C -0.217 4.217 25 C -0.213 4.213 26 C -0.191 4.191 27 H 0.136 0.864 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.172 0.828 33 H 0.188 0.812 34 H 0.179 0.821 35 H 0.162 0.838 36 H 0.049 0.951 37 H 0.036 0.964 38 H 0.073 0.927 39 H 0.113 0.887 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.116 0.884 43 H 0.112 0.888 44 H 0.123 0.877 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.453 -9.806 -12.052 15.605 hybrid contribution 0.534 -0.061 1.195 1.311 sum -0.919 -9.867 -10.856 14.699 Atomic orbital electron populations 1.23136 0.78624 1.05021 1.01217 1.87771 1.22129 1.25139 1.95661 1.21679 0.90369 0.87111 1.01866 1.19363 0.93609 0.93786 0.95419 1.21310 0.95889 0.96827 1.00281 1.21892 0.93090 1.00302 0.92889 1.21704 1.02045 0.91860 1.00460 1.21188 0.91611 1.00295 0.91998 1.30502 1.05836 1.20612 1.19408 1.01715 0.73560 0.73711 0.72675 1.93529 1.81283 1.86631 1.35156 1.93505 1.62071 1.86800 1.56101 1.57125 1.53589 1.54513 1.16506 1.18827 0.96270 0.94816 0.76461 1.21971 1.19535 1.17433 0.99563 0.90135 1.25773 0.98933 0.95972 0.98048 1.70061 1.43205 1.29967 1.13572 0.85625 0.79555 0.79655 0.77395 1.19266 1.21654 1.18460 1.20985 0.94993 0.94607 0.86574 1.22762 1.06261 1.00147 0.92487 1.23083 0.98536 1.02814 0.96872 1.23052 0.95944 0.99817 1.00245 0.86360 0.93304 0.92883 0.91696 0.90393 0.82812 0.81213 0.82116 0.83807 0.95133 0.96428 0.92664 0.88714 0.89563 0.89300 0.88389 0.88789 0.87713 0.87020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 11.01 113.37 1.25 1.57 16 2 O -0.39 -11.01 9.20 -148.98 -1.37 -12.38 16 3 C 0.07 2.26 4.96 71.24 0.35 2.61 16 4 C -0.02 -0.71 5.87 -19.87 -0.12 -0.83 16 5 C -0.12 -3.59 9.37 22.27 0.21 -3.38 16 6 C -0.06 -1.55 10.05 22.27 0.22 -1.33 16 7 C -0.14 -3.82 10.05 22.27 0.22 -3.60 16 8 C -0.03 -1.08 8.75 22.27 0.19 -0.89 16 9 C -0.68 -25.62 5.83 22.27 0.13 -25.49 16 10 S 2.69 112.92 4.63 -56.49 -0.26 112.66 16 11 O -0.98 -40.32 17.11 -128.00 -2.19 -42.51 16 12 O -0.99 -48.41 14.81 -128.00 -1.90 -50.31 16 13 N -0.98 -40.45 1.93 -519.85 -1.00 -41.45 16 14 C 0.26 13.03 5.42 85.63 0.46 13.50 16 15 C -0.55 -28.11 9.38 25.60 0.24 -27.87 16 16 H 0.08 3.79 5.54 -2.91 -0.02 3.78 16 17 C 0.01 0.66 5.46 84.65 0.46 1.12 16 18 N -0.93 -53.80 13.29 21.44 0.28 -53.51 16 19 Si 0.95 41.73 29.54 68.60 2.03 43.75 16 20 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 21 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 22 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 23 C 0.15 5.14 4.82 86.38 0.42 5.55 16 24 C -0.20 -6.18 6.01 -10.79 -0.06 -6.24 16 25 C -0.18 -4.75 10.18 30.62 0.31 -4.44 16 26 C -0.15 -3.60 10.25 30.62 0.31 -3.28 16 27 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 2.16 7.90 -2.39 -0.02 2.14 16 31 H 0.08 2.87 7.04 -2.39 -0.02 2.85 16 32 H 0.15 3.82 7.02 -2.91 -0.02 3.80 16 33 H 0.17 2.61 8.06 -2.91 -0.02 2.58 16 34 H 0.16 3.21 8.06 -2.91 -0.02 3.18 16 35 H 0.14 4.68 5.33 -2.91 -0.02 4.66 16 36 H 0.03 1.60 8.11 -2.39 -0.02 1.58 16 37 H 0.02 1.01 6.89 -2.39 -0.02 0.99 16 38 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 39 H 0.09 3.02 8.11 -2.39 -0.02 3.00 16 40 H 0.09 2.53 7.43 -2.38 -0.02 2.51 16 41 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 42 H 0.10 2.61 8.03 -2.39 -0.02 2.59 16 43 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 44 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.11 2.21 8.14 -2.38 -0.02 2.20 16 Total: -1.00 -69.79 382.05 1.19 -68.60 By element: Atomic # 1 Polarization: 27.17 SS G_CDS: 0.99 Total: 28.16 kcal Atomic # 6 Polarization: -57.61 SS G_CDS: 4.61 Total: -53.00 kcal Atomic # 7 Polarization: -94.25 SS G_CDS: -0.72 Total: -94.97 kcal Atomic # 8 Polarization: -99.74 SS G_CDS: -5.46 Total: -105.20 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.75 kcal Atomic # 16 Polarization: 112.92 SS G_CDS: -0.26 Total: 112.66 kcal Total: -69.79 1.19 -68.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351999315.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.985 kcal (2) G-P(sol) polarization free energy of solvation -69.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds