Wall clock time and date at job start Sat Apr 11 2020 05:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47343 * 2 1 4 4 C 1.52999 * 109.47260 * 120.00249 * 2 1 3 5 5 S 1.81403 * 109.47153 * 184.99885 * 4 2 1 6 6 C 1.81394 * 101.92080 * 180.02562 * 5 4 2 7 7 O 1.42104 * 108.57764 * 65.51356 * 5 4 2 8 8 O 1.42100 * 108.57849 * 294.48887 * 5 4 2 9 9 N 1.46506 * 109.47219 * 240.00277 * 2 1 3 10 10 C 1.34777 * 119.99524 * 84.99898 * 9 2 1 11 11 O 1.21279 * 120.00481 * 359.97438 * 10 9 2 12 12 C 1.50702 * 119.99695 * 180.02562 * 10 9 2 13 13 C 1.53000 * 109.47384 * 179.97438 * 12 10 9 14 14 H 1.08996 * 109.47193 * 305.00113 * 13 12 10 15 15 C 1.50696 * 109.46729 * 65.00141 * 13 12 10 16 16 H 1.08008 * 119.99972 * 234.67740 * 15 13 12 17 17 C 1.37879 * 120.00554 * 54.68040 * 15 13 12 18 18 N 1.31516 * 119.99332 * 4.87037 * 17 15 13 19 19 Si 1.86795 * 120.00253 * 184.87159 * 17 15 13 20 20 H 1.48501 * 109.47527 * 89.99818 * 19 17 15 21 21 H 1.48499 * 109.46973 * 209.99971 * 19 17 15 22 22 H 1.48499 * 109.47184 * 329.99543 * 19 17 15 23 23 C 1.50694 * 109.47236 * 184.99849 * 13 12 10 24 24 C 1.38233 * 119.99938 * 151.48303 * 23 13 12 25 25 C 1.38244 * 120.00023 * 179.78722 * 24 23 13 26 26 C 1.38231 * 119.99542 * 0.44814 * 25 24 23 27 27 C 1.38230 * 120.00534 * 359.80460 * 26 25 24 28 28 C 1.38234 * 119.99784 * 359.97438 * 27 26 25 29 29 H 1.08995 * 109.47134 * 59.99880 * 1 2 3 30 30 H 1.08998 * 109.46606 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46666 * 299.99492 * 1 2 3 32 32 H 1.08998 * 109.46861 * 64.99980 * 4 2 1 33 33 H 1.09000 * 109.47283 * 304.99785 * 4 2 1 34 34 H 1.09000 * 109.47546 * 299.99741 * 6 5 4 35 35 H 1.09000 * 109.47292 * 60.00151 * 6 5 4 36 36 H 1.09006 * 109.47155 * 180.02562 * 6 5 4 37 37 H 0.96992 * 119.99989 * 264.99812 * 9 2 1 38 38 H 1.09008 * 109.47021 * 300.00237 * 12 10 9 39 39 H 1.09003 * 109.46861 * 59.99653 * 12 10 9 40 40 H 0.97001 * 119.99369 * 180.02562 * 18 17 15 41 41 H 1.08005 * 120.00222 * 0.02562 * 24 23 13 42 42 H 1.08001 * 119.99862 * 180.28076 * 25 24 23 43 43 H 1.08004 * 119.99489 * 179.83783 * 26 25 24 44 44 H 1.07997 * 120.00339 * 179.97438 * 27 26 25 45 45 H 1.08004 * 119.99787 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 16 3.8479 -0.5933 1.3256 6 6 4.2236 -1.4993 2.8515 7 8 4.1978 0.7715 1.5109 8 8 4.3992 -1.3079 0.2280 9 7 2.0184 -0.6906 -1.1962 10 6 2.1471 -0.0181 -2.3571 11 8 1.8582 1.1585 -2.4117 12 6 2.6489 -0.7285 -3.5878 13 6 2.6999 0.2545 -4.7591 14 1 1.7200 0.7133 -4.8913 15 6 3.7212 1.3248 -4.4724 16 1 3.4376 2.3663 -4.5118 17 6 5.0176 0.9748 -4.1598 18 7 5.3872 -0.2865 -4.2052 19 14 6.2489 2.2920 -3.6717 20 1 6.2095 2.4855 -2.1999 21 1 7.6131 1.8696 -4.0790 22 1 5.9031 3.5679 -4.3481 23 6 3.0835 -0.4819 -6.0166 24 6 2.6501 -0.0224 -7.2462 25 6 3.0058 -0.6954 -8.4002 26 6 3.7870 -1.8332 -8.3237 27 6 4.2160 -2.2958 -7.0938 28 6 3.8643 -1.6202 -5.9402 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3632 0.5137 0.8900 32 1 1.7517 -1.7715 1.2055 33 1 1.6055 -0.2618 2.1370 34 1 3.7249 -1.0174 3.6924 35 1 3.8711 -2.5267 2.7602 36 1 5.3007 -1.4979 3.0191 37 1 2.2491 -1.6317 -1.1527 38 1 3.6481 -1.1211 -3.3987 39 1 1.9760 -1.5504 -3.8326 40 1 6.2992 -0.5328 -3.9849 41 1 2.0369 0.8647 -7.3057 42 1 2.6709 -0.3338 -9.3612 43 1 4.0626 -2.3605 -9.2251 44 1 4.8261 -3.1849 -7.0340 45 1 4.1991 -1.9818 -4.9792 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356117161.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:04 Heat of formation + Delta-G solvation = -104.502184 kcal Electronic energy + Delta-G solvation = -28404.905737 eV Core-core repulsion = 24513.924517 eV Total energy + Delta-G solvation = -3890.981220 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.79356 -39.68927 -37.96673 -37.25434 -36.85842 -35.90411 -33.07109 -32.50209 -31.37600 -30.46727 -29.85865 -28.60809 -27.66657 -24.58405 -23.16575 -22.53571 -21.58203 -20.92116 -19.80767 -18.46176 -17.91826 -17.64297 -17.42716 -17.12972 -16.87940 -16.71811 -16.43055 -15.88737 -15.45765 -15.24716 -14.83224 -14.48293 -14.43982 -14.14459 -13.90467 -13.79220 -13.77067 -13.64408 -13.37685 -13.24092 -13.14212 -13.02958 -12.98225 -12.95732 -12.83601 -12.70677 -12.28051 -12.14002 -11.91315 -11.86114 -11.68090 -11.35382 -11.06118 -11.03154 -10.62130 -10.29786 -9.97871 -9.38334 -9.10377 -7.95351 -6.10181 -0.94025 0.90470 1.01827 1.29370 1.36313 1.40725 1.89860 2.01287 2.39423 2.42851 2.78056 3.12819 3.19821 3.39097 3.49605 3.94472 4.09184 4.18180 4.23238 4.30026 4.35976 4.42785 4.48019 4.53983 4.64457 4.70804 4.78844 4.83406 4.91401 4.94980 5.01685 5.09715 5.16791 5.27741 5.39668 5.55691 5.61462 5.68122 5.69654 5.92114 5.96436 6.11488 6.37203 6.44514 6.59471 6.75542 6.85786 7.51423 7.59946 8.93127 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013314 B = 0.004038 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.575487 B = 6932.076684 C = 7592.551565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.138 3.862 3 H 0.059 0.941 4 C -0.598 4.598 5 S 2.379 3.621 6 C -0.627 4.627 7 O -1.004 7.004 8 O -0.976 6.976 9 N -0.737 5.737 10 C 0.522 3.478 11 O -0.570 6.570 12 C -0.134 4.134 13 C 0.089 3.911 14 H 0.018 0.982 15 C -0.491 4.491 16 H 0.028 0.972 17 C 0.034 3.966 18 N -0.878 5.878 19 Si 0.916 3.084 20 H -0.296 1.296 21 H -0.272 1.272 22 H -0.277 1.277 23 C -0.050 4.050 24 C -0.151 4.151 25 C -0.139 4.139 26 C -0.148 4.148 27 C -0.146 4.146 28 C -0.082 4.082 29 H 0.035 0.965 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.184 0.816 33 H 0.188 0.812 34 H 0.160 0.840 35 H 0.164 0.836 36 H 0.129 0.871 37 H 0.413 0.587 38 H 0.121 0.879 39 H 0.079 0.921 40 H 0.260 0.740 41 H 0.103 0.897 42 H 0.133 0.867 43 H 0.137 0.863 44 H 0.126 0.874 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.762 -11.545 13.688 19.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.033 3.967 3 H 0.077 0.923 4 C -0.728 4.728 5 S 2.568 3.432 6 C -0.780 4.780 7 O -1.001 7.001 8 O -0.973 6.973 9 N -0.393 5.393 10 C 0.311 3.689 11 O -0.448 6.448 12 C -0.174 4.174 13 C 0.070 3.930 14 H 0.036 0.964 15 C -0.529 4.529 16 H 0.046 0.954 17 C -0.166 4.166 18 N -0.517 5.517 19 Si 0.744 3.256 20 H -0.223 1.223 21 H -0.197 1.197 22 H -0.202 1.202 23 C -0.051 4.051 24 C -0.169 4.169 25 C -0.157 4.157 26 C -0.166 4.166 27 C -0.164 4.164 28 C -0.100 4.100 29 H 0.054 0.946 30 H 0.105 0.895 31 H 0.110 0.890 32 H 0.202 0.798 33 H 0.206 0.794 34 H 0.178 0.822 35 H 0.182 0.818 36 H 0.148 0.852 37 H 0.250 0.750 38 H 0.138 0.862 39 H 0.097 0.903 40 H 0.070 0.930 41 H 0.121 0.879 42 H 0.151 0.849 43 H 0.155 0.845 44 H 0.144 0.856 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.172 -10.357 13.070 18.153 hybrid contribution 0.738 0.700 0.734 1.255 sum -6.433 -9.657 13.805 18.033 Atomic orbital electron populations 1.22065 0.91852 1.03880 1.02654 1.20635 0.97518 0.95928 0.82646 0.92271 1.30505 1.22883 1.13364 1.06084 1.08567 0.80014 0.75584 0.78991 1.30045 1.13150 1.16193 1.18649 1.93543 1.83041 1.35995 1.87514 1.93598 1.77054 1.74590 1.52076 1.46251 1.68936 1.14804 1.09301 1.21151 0.75097 0.86978 0.85675 1.90584 1.50584 1.17770 1.85827 1.21805 1.03922 0.98728 0.92896 1.17520 0.94205 0.92297 0.88972 0.96387 1.20939 0.94674 0.92017 1.45277 0.95401 1.25207 0.98799 0.96728 0.95861 1.69739 1.18099 1.15225 1.48622 0.86202 0.80228 0.81373 0.77779 1.22270 1.19742 1.20162 1.20281 0.95876 0.93563 0.95344 1.21075 1.02566 1.00162 0.93136 1.21157 1.00125 0.96706 0.97728 1.21193 0.99996 0.97591 0.97787 1.21351 1.01267 1.00799 0.93030 1.21318 0.95060 0.94480 0.99166 0.94571 0.89544 0.88957 0.79794 0.79404 0.82223 0.81781 0.85231 0.74970 0.86160 0.90294 0.93020 0.87864 0.84901 0.84521 0.85619 0.85465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 9.48 71.98 0.68 -2.40 16 2 C 0.14 3.74 2.57 44.99 0.12 3.85 16 3 H 0.06 2.10 7.58 -2.39 -0.02 2.09 16 4 C -0.60 -8.18 5.33 71.98 0.38 -7.80 16 5 S 2.38 54.56 5.28 -56.49 -0.30 54.26 16 6 C -0.63 -5.27 10.62 113.37 1.20 -4.07 16 7 O -1.00 -35.37 18.10 -127.37 -2.31 -37.68 16 8 O -0.98 -32.58 16.90 -127.37 -2.15 -34.73 16 9 N -0.74 -24.82 4.16 -442.52 -1.84 -26.66 16 10 C 0.52 23.92 7.54 87.66 0.66 24.58 16 11 O -0.57 -30.75 14.65 -3.03 -0.04 -30.80 16 12 C -0.13 -6.23 4.07 29.85 0.12 -6.11 16 13 C 0.09 4.68 1.97 -12.29 -0.02 4.65 16 14 H 0.02 0.96 7.91 -2.39 -0.02 0.94 16 15 C -0.49 -29.18 7.27 25.60 0.19 -28.99 16 16 H 0.03 1.76 7.82 -2.91 -0.02 1.74 16 17 C 0.03 1.97 5.12 84.66 0.43 2.41 16 18 N -0.88 -48.86 7.99 21.45 0.17 -48.69 16 19 Si 0.92 48.68 29.54 68.60 2.03 50.71 16 20 H -0.30 -16.44 7.11 99.48 0.71 -15.73 16 21 H -0.27 -13.69 7.11 99.48 0.71 -12.98 16 22 H -0.28 -14.61 7.11 99.48 0.71 -13.91 16 23 C -0.05 -2.42 4.69 -19.87 -0.09 -2.51 16 24 C -0.15 -6.67 9.71 22.27 0.22 -6.46 16 25 C -0.14 -5.19 10.05 22.27 0.22 -4.97 16 26 C -0.15 -5.23 10.05 22.27 0.22 -5.00 16 27 C -0.15 -5.69 10.05 22.27 0.22 -5.46 16 28 C -0.08 -3.71 7.45 22.27 0.17 -3.55 16 29 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.18 0.80 8.14 -2.39 -0.02 0.79 16 33 H 0.19 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.16 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.16 0.29 8.14 -2.39 -0.02 0.27 16 36 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.41 11.44 8.20 -92.71 -0.76 10.68 16 38 H 0.12 6.08 4.71 -2.38 -0.01 6.07 16 39 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 40 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 41 H 0.10 4.45 8.06 -2.91 -0.02 4.42 16 42 H 0.13 4.04 8.06 -2.91 -0.02 4.01 16 43 H 0.14 3.80 8.06 -2.91 -0.02 3.78 16 44 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 45 H 0.13 6.05 5.18 -2.91 -0.02 6.04 16 Total: -1.00 -90.92 379.12 0.52 -90.40 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: 0.23 Total: 25.01 kcal Atomic # 6 Polarization: -46.55 SS G_CDS: 4.72 Total: -41.82 kcal Atomic # 7 Polarization: -73.69 SS G_CDS: -1.67 Total: -75.36 kcal Atomic # 8 Polarization: -98.70 SS G_CDS: -4.50 Total: -103.20 kcal Atomic # 14 Polarization: 48.68 SS G_CDS: 2.03 Total: 50.71 kcal Atomic # 16 Polarization: 54.56 SS G_CDS: -0.30 Total: 54.26 kcal Total: -90.92 0.52 -90.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356117161.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.098 kcal (2) G-P(sol) polarization free energy of solvation -90.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds