Wall clock time and date at job start Sat Apr 11 2020 05:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47626 * 2 1 4 4 C 1.53002 * 109.46779 * 119.99344 * 2 1 3 5 5 S 1.81402 * 109.46970 * 185.00077 * 4 2 1 6 6 C 1.81402 * 101.92179 * 180.02562 * 5 4 2 7 7 O 1.42108 * 108.57771 * 294.48675 * 5 4 2 8 8 O 1.42101 * 108.58085 * 65.51181 * 5 4 2 9 9 N 1.46494 * 109.47454 * 239.99277 * 2 1 3 10 10 C 1.34777 * 119.99696 * 84.72616 * 9 2 1 11 11 O 1.21276 * 120.00412 * 0.27402 * 10 9 2 12 12 C 1.50709 * 119.99785 * 180.28046 * 10 9 2 13 13 C 1.53000 * 109.46752 * 179.97438 * 12 10 9 14 14 H 1.09006 * 109.47189 * 55.00084 * 13 12 10 15 15 C 1.50695 * 109.47303 * 294.99522 * 13 12 10 16 16 H 1.08004 * 120.00082 * 325.85479 * 15 13 12 17 17 C 1.37876 * 119.99747 * 145.85288 * 15 13 12 18 18 N 1.31513 * 120.00452 * 6.12045 * 17 15 13 19 19 Si 1.86807 * 119.99789 * 186.11910 * 17 15 13 20 20 H 1.48495 * 109.47118 * 90.00412 * 19 17 15 21 21 H 1.48498 * 109.46963 * 210.00065 * 19 17 15 22 22 H 1.48499 * 109.47102 * 329.99864 * 19 17 15 23 23 C 1.50703 * 109.46744 * 174.99852 * 13 12 10 24 24 C 1.38225 * 120.00215 * 63.45815 * 23 13 12 25 25 C 1.38238 * 120.00283 * 179.79009 * 24 23 13 26 26 C 1.38237 * 119.99586 * 0.43786 * 25 24 23 27 27 C 1.38234 * 120.00002 * 359.81542 * 26 25 24 28 28 C 1.38230 * 120.00042 * 359.97438 * 27 26 25 29 29 H 1.08999 * 109.46881 * 300.00736 * 1 2 3 30 30 H 1.08998 * 109.47112 * 60.00364 * 1 2 3 31 31 H 1.08996 * 109.47320 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47418 * 304.99618 * 4 2 1 33 33 H 1.09000 * 109.47462 * 65.00368 * 4 2 1 34 34 H 1.08999 * 109.47129 * 59.99632 * 6 5 4 35 35 H 1.09002 * 109.47213 * 180.02562 * 6 5 4 36 36 H 1.09000 * 109.46861 * 300.00012 * 6 5 4 37 37 H 0.97003 * 120.00198 * 265.00737 * 9 2 1 38 38 H 1.09004 * 109.46912 * 299.99435 * 12 10 9 39 39 H 1.08991 * 109.47171 * 59.99942 * 12 10 9 40 40 H 0.97002 * 120.00023 * 179.97438 * 18 17 15 41 41 H 1.08002 * 119.99996 * 359.97438 * 24 23 13 42 42 H 1.08002 * 120.00430 * 180.27694 * 25 24 23 43 43 H 1.08004 * 119.99434 * 179.83746 * 26 25 24 44 44 H 1.07999 * 119.99277 * 180.02562 * 27 26 25 45 45 H 1.08007 * 119.99801 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7211 1.2494 5 16 3.8478 -0.5931 1.3258 6 6 4.2234 -1.4989 2.8520 7 8 4.3991 -1.3080 0.2283 8 8 4.1977 0.7716 1.5110 9 7 2.0184 -0.6907 -1.1960 10 6 2.1419 -0.0198 -2.3584 11 8 1.8534 1.1569 -2.4130 12 6 2.6383 -0.7319 -3.5903 13 6 2.6840 0.2496 -4.7631 14 1 3.2868 1.1155 -4.4890 15 6 1.2846 0.6974 -5.0982 16 1 0.4571 0.0124 -4.9865 17 6 1.0608 1.9816 -5.5474 18 7 2.0775 2.7771 -5.7984 19 14 -0.6868 2.5915 -5.7996 20 1 -1.1811 3.2105 -4.5436 21 1 -0.7067 3.5999 -6.8895 22 1 -1.5617 1.4490 -6.1663 23 6 3.2951 -0.4286 -5.9622 24 6 2.6635 -1.5147 -6.5384 25 6 3.2218 -2.1341 -7.6410 26 6 4.4164 -1.6729 -8.1617 27 6 5.0506 -0.5899 -7.5822 28 6 4.4901 0.0321 -6.4824 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.6053 -0.2615 2.1371 33 1 1.7516 -1.7714 1.2058 34 1 3.8708 -2.5263 2.7609 35 1 5.3004 -1.4975 3.0196 36 1 3.7245 -1.0168 3.6927 37 1 2.2490 -1.6319 -1.1524 38 1 3.6384 -1.1241 -3.4051 39 1 1.9645 -1.5540 -3.8311 40 1 1.9199 3.6804 -6.1148 41 1 1.7323 -1.8776 -6.1291 42 1 2.7260 -2.9800 -8.0939 43 1 4.8539 -2.1585 -9.0215 44 1 5.9837 -0.2294 -7.9894 45 1 4.9859 0.8780 -6.0294 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356117186.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:09 Heat of formation + Delta-G solvation = -84.897861 kcal Electronic energy + Delta-G solvation = -27811.734609 eV Core-core repulsion = 23921.603496 eV Total energy + Delta-G solvation = -3890.131113 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.25999 -38.19359 -37.09959 -36.17720 -35.79155 -33.83028 -31.66305 -31.09191 -29.95750 -29.92094 -28.55154 -27.80716 -25.47352 -22.96177 -21.69095 -21.39276 -20.10958 -19.27966 -18.98325 -16.98862 -16.66478 -16.53553 -16.35576 -16.00871 -15.58122 -15.51633 -14.42672 -14.32388 -14.06147 -13.84470 -13.66180 -13.56233 -13.45839 -13.16865 -12.93224 -12.84144 -12.46626 -12.22402 -12.16486 -12.15514 -12.08727 -11.80115 -11.67718 -11.51853 -11.28531 -11.11718 -10.82137 -10.65228 -10.59011 -10.50905 -10.18138 -9.98171 -9.36968 -8.99867 -8.82916 -8.64449 -8.26800 -7.96334 -7.52327 -5.86413 -3.85850 -0.26354 2.37104 2.42859 2.52869 3.42351 3.44169 3.47879 3.48895 3.51294 3.58764 3.82910 4.26775 4.42206 4.45701 4.57386 4.76779 4.83666 5.05968 5.26862 5.33171 5.34610 5.47255 5.63898 5.73120 5.80094 5.81004 5.91719 6.06749 6.21987 6.28253 6.31962 6.39264 6.49302 6.63225 6.85855 6.90787 6.99701 7.12756 7.38794 7.53486 7.61652 7.92852 8.03137 8.08499 8.15262 8.46371 9.11230 9.14904 9.75723 11.23901 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011075 B = 0.003813 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.502481 B = 7341.909709 C = 8938.081327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.157 3.843 3 H 0.101 0.899 4 C -0.622 4.622 5 S 2.418 3.582 6 C -0.663 4.663 7 O -0.923 6.923 8 O -0.933 6.933 9 N -0.755 5.755 10 C 0.518 3.482 11 O -0.492 6.492 12 C -0.123 4.123 13 C 0.078 3.922 14 H 0.073 0.927 15 C -0.491 4.491 16 H 0.050 0.950 17 C 0.079 3.921 18 N -0.880 5.880 19 Si 0.886 3.114 20 H -0.281 1.281 21 H -0.290 1.290 22 H -0.277 1.277 23 C -0.019 4.019 24 C -0.115 4.115 25 C -0.132 4.132 26 C -0.156 4.156 27 C -0.128 4.128 28 C -0.118 4.118 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.142 0.858 33 H 0.136 0.864 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.398 0.602 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.259 0.741 41 H 0.112 0.888 42 H 0.104 0.896 43 H 0.103 0.897 44 H 0.105 0.895 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.892 -12.422 15.840 20.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.050 3.950 3 H 0.119 0.881 4 C -0.751 4.751 5 S 2.599 3.401 6 C -0.811 4.811 7 O -0.920 6.920 8 O -0.930 6.930 9 N -0.413 5.413 10 C 0.305 3.695 11 O -0.362 6.362 12 C -0.163 4.163 13 C 0.059 3.941 14 H 0.091 0.909 15 C -0.529 4.529 16 H 0.068 0.932 17 C -0.125 4.125 18 N -0.518 5.518 19 Si 0.714 3.286 20 H -0.207 1.207 21 H -0.216 1.216 22 H -0.202 1.202 23 C -0.020 4.020 24 C -0.133 4.133 25 C -0.150 4.150 26 C -0.175 4.175 27 C -0.146 4.146 28 C -0.136 4.136 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.161 0.839 33 H 0.154 0.846 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.144 0.856 37 H 0.233 0.767 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.068 0.932 41 H 0.131 0.869 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.323 -10.907 15.139 18.802 hybrid contribution -1.545 -0.524 0.486 1.702 sum 0.778 -11.431 15.624 19.375 Atomic orbital electron populations 1.22128 0.93937 1.02221 1.03151 1.20372 0.95959 0.97166 0.81459 0.88058 1.30697 1.26365 1.10684 1.07380 1.08062 0.78372 0.76396 0.77298 1.30366 1.12389 1.15397 1.22965 1.93620 1.75446 1.74494 1.48489 1.93626 1.81328 1.31841 1.86206 1.46495 1.70772 1.14338 1.09656 1.20953 0.77056 0.87835 0.83678 1.90764 1.46073 1.15600 1.83774 1.21809 1.00254 1.00163 0.94111 1.17859 0.97824 0.92728 0.85671 0.90918 1.20675 0.90910 0.96913 1.44371 0.93183 1.24807 0.96207 0.96785 0.94654 1.69915 1.29824 1.07474 1.44538 0.86713 0.85769 0.78602 0.77507 1.20714 1.21565 1.20195 1.20723 0.91223 0.91677 0.98358 1.20933 0.99385 0.96756 0.96262 1.20962 0.96357 1.00249 0.97479 1.20783 0.97041 0.98831 1.00801 1.20976 0.99664 0.96824 0.97154 1.21099 0.96178 0.99545 0.96797 0.91990 0.90681 0.92396 0.83942 0.84570 0.85440 0.85332 0.85575 0.76713 0.91079 0.90480 0.93167 0.86948 0.87744 0.87874 0.87679 0.86810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.48 37.16 0.35 -1.49 16 2 C 0.16 2.01 2.57 -67.93 -0.17 1.83 16 3 H 0.10 1.56 7.58 -51.93 -0.39 1.17 16 4 C -0.62 -4.43 5.33 37.16 0.20 -4.23 16 5 S 2.42 22.34 5.28 -107.50 -0.57 21.77 16 6 C -0.66 -2.95 10.62 101.05 1.07 -1.87 16 7 O -0.92 -11.89 16.90 -57.83 -0.98 -12.87 16 8 O -0.93 -13.08 18.10 -57.83 -1.05 -14.13 16 9 N -0.75 -11.33 4.16 -53.81 -0.22 -11.56 16 10 C 0.52 10.60 7.54 -10.98 -0.08 10.51 16 11 O -0.49 -12.40 14.65 5.56 0.08 -12.32 16 12 C -0.12 -2.49 4.95 -27.88 -0.14 -2.63 16 13 C 0.08 1.93 1.67 -92.92 -0.16 1.77 16 14 H 0.07 2.06 6.98 -51.93 -0.36 1.70 16 15 C -0.49 -13.36 6.37 -34.44 -0.22 -13.58 16 16 H 0.05 1.35 7.82 -52.48 -0.41 0.94 16 17 C 0.08 2.25 5.45 -17.82 -0.10 2.16 16 18 N -0.88 -26.38 12.87 55.43 0.71 -25.66 16 19 Si 0.89 22.49 29.54 -169.99 -5.02 17.46 16 20 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 21 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 C -0.02 -0.44 4.77 -104.62 -0.50 -0.94 16 24 C -0.12 -2.39 8.86 -39.59 -0.35 -2.74 16 25 C -0.13 -2.45 10.05 -39.58 -0.40 -2.84 16 26 C -0.16 -2.82 10.05 -39.58 -0.40 -3.22 16 27 C -0.13 -2.46 10.05 -39.59 -0.40 -2.85 16 28 C -0.12 -2.59 9.67 -39.58 -0.38 -2.98 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.14 0.57 8.14 -51.92 -0.42 0.14 16 33 H 0.14 0.53 8.14 -51.92 -0.42 0.11 16 34 H 0.13 0.29 8.14 -51.92 -0.42 -0.13 16 35 H 0.13 0.56 8.14 -51.92 -0.42 0.14 16 36 H 0.13 0.31 8.14 -51.92 -0.42 -0.11 16 37 H 0.40 4.78 8.20 -40.82 -0.33 4.44 16 38 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 39 H 0.08 1.41 7.77 -51.93 -0.40 1.00 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.11 2.23 7.76 -52.49 -0.41 1.83 16 42 H 0.10 1.63 8.06 -52.49 -0.42 1.20 16 43 H 0.10 1.55 8.06 -52.48 -0.42 1.13 16 44 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 45 H 0.11 2.54 7.95 -52.48 -0.42 2.12 16 LS Contribution 390.07 15.07 5.88 5.88 Total: -1.00 -38.82 390.07 -9.77 -48.59 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -6.94 Total: 5.93 kcal Atomic # 6 Polarization: -21.43 SS G_CDS: -1.67 Total: -23.10 kcal Atomic # 7 Polarization: -37.71 SS G_CDS: 0.49 Total: -37.22 kcal Atomic # 8 Polarization: -37.37 SS G_CDS: -1.94 Total: -39.31 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Atomic # 16 Polarization: 22.34 SS G_CDS: -0.57 Total: 21.77 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -38.82 -9.77 -48.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356117186.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.305 kcal (2) G-P(sol) polarization free energy of solvation -38.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds