Wall clock time and date at job start Sat Apr 11 2020 05:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47626 * 2 1 4 4 C 1.53002 * 109.46779 * 119.99344 * 2 1 3 5 5 S 1.81402 * 109.46970 * 185.00077 * 4 2 1 6 6 C 1.81402 * 101.92179 * 180.02562 * 5 4 2 7 7 O 1.42108 * 108.57771 * 294.48675 * 5 4 2 8 8 O 1.42101 * 108.58085 * 65.51181 * 5 4 2 9 9 N 1.46494 * 109.47454 * 239.99277 * 2 1 3 10 10 C 1.34777 * 119.99696 * 84.72616 * 9 2 1 11 11 O 1.21276 * 120.00412 * 0.27402 * 10 9 2 12 12 C 1.50709 * 119.99785 * 180.28046 * 10 9 2 13 13 C 1.53000 * 109.46752 * 179.97438 * 12 10 9 14 14 H 1.09006 * 109.47189 * 55.00084 * 13 12 10 15 15 C 1.50695 * 109.47303 * 294.99522 * 13 12 10 16 16 H 1.08004 * 120.00082 * 325.85479 * 15 13 12 17 17 C 1.37876 * 119.99747 * 145.85288 * 15 13 12 18 18 N 1.31513 * 120.00452 * 6.12045 * 17 15 13 19 19 Si 1.86807 * 119.99789 * 186.11910 * 17 15 13 20 20 H 1.48495 * 109.47118 * 90.00412 * 19 17 15 21 21 H 1.48498 * 109.46963 * 210.00065 * 19 17 15 22 22 H 1.48499 * 109.47102 * 329.99864 * 19 17 15 23 23 C 1.50703 * 109.46744 * 174.99852 * 13 12 10 24 24 C 1.38225 * 120.00215 * 63.45815 * 23 13 12 25 25 C 1.38238 * 120.00283 * 179.79009 * 24 23 13 26 26 C 1.38237 * 119.99586 * 0.43786 * 25 24 23 27 27 C 1.38234 * 120.00002 * 359.81542 * 26 25 24 28 28 C 1.38230 * 120.00042 * 359.97438 * 27 26 25 29 29 H 1.08999 * 109.46881 * 300.00736 * 1 2 3 30 30 H 1.08998 * 109.47112 * 60.00364 * 1 2 3 31 31 H 1.08996 * 109.47320 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47418 * 304.99618 * 4 2 1 33 33 H 1.09000 * 109.47462 * 65.00368 * 4 2 1 34 34 H 1.08999 * 109.47129 * 59.99632 * 6 5 4 35 35 H 1.09002 * 109.47213 * 180.02562 * 6 5 4 36 36 H 1.09000 * 109.46861 * 300.00012 * 6 5 4 37 37 H 0.97003 * 120.00198 * 265.00737 * 9 2 1 38 38 H 1.09004 * 109.46912 * 299.99435 * 12 10 9 39 39 H 1.08991 * 109.47171 * 59.99942 * 12 10 9 40 40 H 0.97002 * 120.00023 * 179.97438 * 18 17 15 41 41 H 1.08002 * 119.99996 * 359.97438 * 24 23 13 42 42 H 1.08002 * 120.00430 * 180.27694 * 25 24 23 43 43 H 1.08004 * 119.99434 * 179.83746 * 26 25 24 44 44 H 1.07999 * 119.99277 * 180.02562 * 27 26 25 45 45 H 1.08007 * 119.99801 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7211 1.2494 5 16 3.8478 -0.5931 1.3258 6 6 4.2234 -1.4989 2.8520 7 8 4.3991 -1.3080 0.2283 8 8 4.1977 0.7716 1.5110 9 7 2.0184 -0.6907 -1.1960 10 6 2.1419 -0.0198 -2.3584 11 8 1.8534 1.1569 -2.4130 12 6 2.6383 -0.7319 -3.5903 13 6 2.6840 0.2496 -4.7631 14 1 3.2868 1.1155 -4.4890 15 6 1.2846 0.6974 -5.0982 16 1 0.4571 0.0124 -4.9865 17 6 1.0608 1.9816 -5.5474 18 7 2.0775 2.7771 -5.7984 19 14 -0.6868 2.5915 -5.7996 20 1 -1.1811 3.2105 -4.5436 21 1 -0.7067 3.5999 -6.8895 22 1 -1.5617 1.4490 -6.1663 23 6 3.2951 -0.4286 -5.9622 24 6 2.6635 -1.5147 -6.5384 25 6 3.2218 -2.1341 -7.6410 26 6 4.4164 -1.6729 -8.1617 27 6 5.0506 -0.5899 -7.5822 28 6 4.4901 0.0321 -6.4824 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.6053 -0.2615 2.1371 33 1 1.7516 -1.7714 1.2058 34 1 3.8708 -2.5263 2.7609 35 1 5.3004 -1.4975 3.0196 36 1 3.7245 -1.0168 3.6927 37 1 2.2490 -1.6319 -1.1524 38 1 3.6384 -1.1241 -3.4051 39 1 1.9645 -1.5540 -3.8311 40 1 1.9199 3.6804 -6.1148 41 1 1.7323 -1.8776 -6.1291 42 1 2.7260 -2.9800 -8.0939 43 1 4.8539 -2.1585 -9.0215 44 1 5.9837 -0.2294 -7.9894 45 1 4.9859 0.8780 -6.0294 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356117186.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:08 Heat of formation + Delta-G solvation = -114.606021 kcal Electronic energy + Delta-G solvation = -27813.022852 eV Core-core repulsion = 23921.603496 eV Total energy + Delta-G solvation = -3891.419356 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.81152 -39.75820 -37.95117 -37.25349 -36.85418 -35.68861 -33.50099 -32.53510 -31.49127 -30.46631 -30.06119 -28.60679 -27.44253 -24.69231 -23.17967 -22.67787 -21.57975 -20.92845 -19.79245 -18.52161 -18.08955 -17.62693 -17.54419 -17.20562 -16.78917 -16.58401 -16.37062 -15.90041 -15.63914 -15.42977 -14.73672 -14.47770 -14.41758 -14.08881 -13.96451 -13.87659 -13.84007 -13.67986 -13.51211 -13.42616 -13.20395 -13.02052 -12.98125 -12.95208 -12.85093 -12.52717 -12.44623 -12.17925 -11.91829 -11.82253 -11.67821 -11.35476 -11.30350 -10.95051 -10.65299 -10.34714 -10.01514 -9.53328 -9.17886 -8.02855 -6.05843 -0.91955 0.78793 0.85373 1.34746 1.39909 1.44715 1.91152 1.96397 2.32099 2.46664 2.76859 3.15527 3.19985 3.37418 3.50034 3.94578 4.12260 4.15591 4.19927 4.26130 4.30148 4.36550 4.42342 4.46642 4.56318 4.65117 4.67444 4.75406 4.77767 4.93427 4.97929 5.00053 5.02338 5.24949 5.27750 5.38667 5.53501 5.60455 5.65154 5.79505 5.84322 5.96257 6.18546 6.42904 6.47541 6.75026 7.01963 7.56412 7.58863 9.07396 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011075 B = 0.003813 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.502481 B = 7341.909709 C = 8938.081327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.141 3.859 3 H 0.062 0.938 4 C -0.601 4.601 5 S 2.393 3.607 6 C -0.628 4.628 7 O -0.976 6.976 8 O -1.000 7.000 9 N -0.734 5.734 10 C 0.513 3.487 11 O -0.553 6.553 12 C -0.119 4.119 13 C 0.080 3.920 14 H 0.019 0.981 15 C -0.481 4.481 16 H 0.050 0.950 17 C 0.020 3.980 18 N -0.920 5.920 19 Si 0.938 3.062 20 H -0.289 1.289 21 H -0.288 1.288 22 H -0.260 1.260 23 C -0.045 4.045 24 C -0.126 4.126 25 C -0.125 4.125 26 C -0.148 4.148 27 C -0.128 4.128 28 C -0.146 4.146 29 H 0.090 0.910 30 H 0.028 0.972 31 H 0.086 0.914 32 H 0.185 0.815 33 H 0.184 0.816 34 H 0.163 0.837 35 H 0.132 0.868 36 H 0.157 0.843 37 H 0.416 0.584 38 H 0.084 0.916 39 H 0.102 0.898 40 H 0.253 0.747 41 H 0.118 0.882 42 H 0.143 0.857 43 H 0.145 0.855 44 H 0.131 0.869 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.758 -16.828 17.142 24.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.035 3.965 3 H 0.080 0.920 4 C -0.731 4.731 5 S 2.582 3.418 6 C -0.781 4.781 7 O -0.973 6.973 8 O -0.998 6.998 9 N -0.392 5.392 10 C 0.300 3.700 11 O -0.429 6.429 12 C -0.159 4.159 13 C 0.061 3.939 14 H 0.037 0.963 15 C -0.519 4.519 16 H 0.069 0.931 17 C -0.178 4.178 18 N -0.560 5.560 19 Si 0.765 3.235 20 H -0.216 1.216 21 H -0.214 1.214 22 H -0.184 1.184 23 C -0.046 4.046 24 C -0.145 4.145 25 C -0.143 4.143 26 C -0.165 4.165 27 C -0.146 4.146 28 C -0.165 4.165 29 H 0.108 0.892 30 H 0.047 0.953 31 H 0.105 0.895 32 H 0.203 0.797 33 H 0.201 0.799 34 H 0.181 0.819 35 H 0.151 0.849 36 H 0.175 0.825 37 H 0.254 0.746 38 H 0.103 0.897 39 H 0.120 0.880 40 H 0.061 0.939 41 H 0.136 0.864 42 H 0.161 0.839 43 H 0.163 0.837 44 H 0.149 0.851 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.194 -15.357 16.430 22.521 hybrid contribution -1.126 0.690 0.206 1.336 sum 0.069 -14.667 16.636 22.178 Atomic orbital electron populations 1.22091 0.92773 1.03757 1.02319 1.20573 0.96985 0.96111 0.82809 0.92008 1.30537 1.23722 1.13225 1.05657 1.08214 0.79334 0.75429 0.78843 1.30051 1.13259 1.16155 1.18680 1.93556 1.76899 1.74635 1.52214 1.93552 1.82816 1.35929 1.87474 1.46228 1.69036 1.14955 1.08962 1.21031 0.76516 0.87180 0.85259 1.90740 1.49089 1.18056 1.84995 1.21705 1.01702 0.99634 0.92878 1.17640 0.95758 0.92278 0.88219 0.96289 1.20959 0.92164 0.96675 1.42134 0.93141 1.25537 0.99328 0.97471 0.95458 1.70079 1.31531 1.07480 1.46910 0.85871 0.82243 0.78522 0.76870 1.21615 1.21371 1.18368 1.20555 0.92378 0.93419 0.98208 1.21038 0.99665 0.96397 0.97352 1.21385 0.96274 1.00545 0.96072 1.21268 0.96444 0.97645 1.01171 1.21271 1.00559 0.96923 0.95887 1.21099 0.96861 0.99878 0.98644 0.89152 0.95287 0.89535 0.79722 0.79871 0.81899 0.84938 0.82502 0.74650 0.89722 0.88015 0.93856 0.86419 0.83886 0.83722 0.85133 0.89271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 9.48 71.98 0.68 -2.72 16 2 C 0.14 3.58 2.57 44.99 0.12 3.70 16 3 H 0.06 2.08 7.58 -2.39 -0.02 2.06 16 4 C -0.60 -6.61 5.33 71.98 0.38 -6.22 16 5 S 2.39 42.25 5.28 -56.49 -0.30 41.95 16 6 C -0.63 -2.78 10.62 113.37 1.20 -1.57 16 7 O -0.98 -25.50 16.90 -127.37 -2.15 -27.65 16 8 O -1.00 -29.80 18.10 -127.37 -2.31 -32.10 16 9 N -0.73 -22.38 4.16 -442.54 -1.84 -24.22 16 10 C 0.51 22.28 7.54 87.66 0.66 22.94 16 11 O -0.55 -30.41 14.65 -3.02 -0.04 -30.45 16 12 C -0.12 -5.04 4.95 29.85 0.15 -4.89 16 13 C 0.08 4.21 1.67 -12.29 -0.02 4.19 16 14 H 0.02 1.18 6.98 -2.38 -0.02 1.16 16 15 C -0.48 -27.41 6.37 25.60 0.16 -27.25 16 16 H 0.05 2.79 7.82 -2.91 -0.02 2.77 16 17 C 0.02 1.23 5.45 84.65 0.46 1.69 16 18 N -0.92 -59.01 12.87 21.45 0.28 -58.73 16 19 Si 0.94 48.00 29.54 68.60 2.03 50.03 16 20 H -0.29 -15.05 7.11 99.48 0.71 -14.35 16 21 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 22 H -0.26 -12.40 7.11 99.48 0.71 -11.69 16 23 C -0.05 -2.13 4.77 -19.87 -0.09 -2.23 16 24 C -0.13 -5.14 8.86 22.27 0.20 -4.94 16 25 C -0.12 -4.22 10.05 22.27 0.22 -3.99 16 26 C -0.15 -4.81 10.05 22.27 0.22 -4.58 16 27 C -0.13 -4.80 10.05 22.27 0.22 -4.58 16 28 C -0.15 -6.74 9.67 22.27 0.22 -6.52 16 29 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.19 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.18 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.16 -0.30 8.14 -2.39 -0.02 -0.32 16 35 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.16 -0.13 8.14 -2.39 -0.02 -0.15 16 37 H 0.42 9.54 8.20 -92.71 -0.76 8.78 16 38 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 39 H 0.10 3.72 7.77 -2.39 -0.02 3.71 16 40 H 0.25 15.66 8.31 -92.71 -0.77 14.88 16 41 H 0.12 4.55 7.76 -2.91 -0.02 4.52 16 42 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 43 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 44 H 0.13 4.11 8.06 -2.91 -0.02 4.08 16 45 H 0.09 4.40 7.95 -2.91 -0.02 4.37 16 Total: -1.00 -96.95 390.07 0.67 -96.28 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: 0.22 Total: 21.90 kcal Atomic # 6 Polarization: -41.78 SS G_CDS: 4.79 Total: -36.99 kcal Atomic # 7 Polarization: -81.39 SS G_CDS: -1.56 Total: -82.96 kcal Atomic # 8 Polarization: -85.70 SS G_CDS: -4.50 Total: -90.21 kcal Atomic # 14 Polarization: 48.00 SS G_CDS: 2.03 Total: 50.03 kcal Atomic # 16 Polarization: 42.25 SS G_CDS: -0.30 Total: 41.95 kcal Total: -96.95 0.67 -96.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356117186.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.331 kcal (2) G-P(sol) polarization free energy of solvation -96.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds