Wall clock time and date at job start Sat Apr 11 2020 05:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47033 * 2 1 4 4 C 1.53006 * 109.46594 * 240.00212 * 2 1 3 5 5 S 1.81403 * 109.46794 * 180.02562 * 4 2 1 6 6 C 1.81400 * 101.91965 * 180.02562 * 5 4 2 7 7 O 1.42101 * 108.57722 * 294.49066 * 5 4 2 8 8 O 1.42101 * 108.57744 * 65.51248 * 5 4 2 9 9 N 1.46494 * 109.47168 * 120.00688 * 2 1 3 10 10 C 1.34780 * 119.99915 * 275.00015 * 9 2 1 11 11 O 1.21284 * 119.99631 * 359.97438 * 10 9 2 12 12 C 1.50698 * 120.00342 * 180.02562 * 10 9 2 13 13 C 1.52994 * 109.47404 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.46845 * 55.00037 * 13 12 10 15 15 C 1.50695 * 109.47338 * 294.99823 * 13 12 10 16 16 H 1.07999 * 119.99680 * 325.84831 * 15 13 12 17 17 C 1.37878 * 120.00406 * 145.84711 * 15 13 12 18 18 N 1.31516 * 119.99645 * 6.11520 * 17 15 13 19 19 Si 1.86797 * 120.00147 * 186.12000 * 17 15 13 20 20 H 1.48501 * 109.47353 * 59.99867 * 19 17 15 21 21 H 1.48501 * 109.47190 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47429 * 299.99678 * 19 17 15 23 23 C 1.50702 * 109.47283 * 174.99520 * 13 12 10 24 24 C 1.38238 * 119.99617 * 63.46695 * 23 13 12 25 25 C 1.38235 * 119.99648 * 179.79206 * 24 23 13 26 26 C 1.38238 * 120.00395 * 0.43394 * 25 24 23 27 27 C 1.38241 * 119.99323 * 359.81511 * 26 25 24 28 28 C 1.38230 * 120.00330 * 359.97438 * 27 26 25 29 29 H 1.09000 * 109.47805 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46862 * 300.00072 * 1 2 3 31 31 H 1.09004 * 109.46883 * 59.99360 * 1 2 3 32 32 H 1.09002 * 109.47050 * 299.99747 * 4 2 1 33 33 H 1.09000 * 109.47180 * 60.00073 * 4 2 1 34 34 H 1.08997 * 109.47408 * 60.00111 * 6 5 4 35 35 H 1.08998 * 109.46994 * 180.02562 * 6 5 4 36 36 H 1.09007 * 109.46879 * 300.00109 * 6 5 4 37 37 H 0.97000 * 120.00321 * 94.98854 * 9 2 1 38 38 H 1.09009 * 109.46625 * 299.99658 * 12 10 9 39 39 H 1.08998 * 109.47404 * 59.99218 * 12 10 9 40 40 H 0.97003 * 119.99566 * 179.97438 * 18 17 15 41 41 H 1.07996 * 119.99976 * 359.97438 * 24 23 13 42 42 H 1.07996 * 119.99870 * 180.27722 * 25 24 23 43 43 H 1.07989 * 120.00367 * 179.84164 * 26 25 24 44 44 H 1.08006 * 119.99590 * 179.97438 * 27 26 25 45 45 H 1.08003 * 119.99990 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2494 5 16 3.8539 -0.7220 -1.2490 6 6 4.2285 -1.6086 -2.7866 7 8 4.3072 0.6186 -1.3780 8 8 4.3062 -1.5048 -0.1527 9 7 2.0183 -0.6907 1.1960 10 6 2.1471 -0.0185 2.3571 11 8 1.8590 1.1584 2.4115 12 6 2.6499 -0.7288 3.5874 13 6 2.7019 0.2543 4.7585 14 1 1.7221 0.7130 4.8915 15 6 3.7229 1.3247 4.4710 16 1 4.6174 1.0827 3.9163 17 6 3.5151 2.6131 4.9159 18 7 2.4885 2.8830 5.6924 19 14 4.6916 3.9751 4.4158 20 1 4.7001 4.1035 2.9364 21 1 4.2503 5.2574 5.0210 22 1 6.0594 3.6474 4.8920 23 6 3.0865 -0.4820 6.0159 24 6 4.3259 -1.0869 6.1109 25 6 4.6804 -1.7586 7.2658 26 6 3.7921 -1.8333 8.3224 27 6 2.5507 -1.2328 8.2253 28 6 2.1979 -0.5574 7.0721 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8900 32 1 1.6766 -1.7489 -1.2493 33 1 1.6765 -0.2074 -2.1393 34 1 3.8012 -1.0680 -3.6311 35 1 5.3091 -1.6809 -2.9103 36 1 3.8004 -2.6100 -2.7421 37 1 2.2489 -1.6319 1.1525 38 1 1.9776 -1.5511 3.8324 39 1 3.6492 -1.1207 3.3978 40 1 2.3426 3.7893 6.0058 41 1 5.0183 -1.0320 5.2839 42 1 5.6504 -2.2273 7.3418 43 1 4.0681 -2.3603 9.2237 44 1 1.8565 -1.2915 9.0506 45 1 1.2279 -0.0886 6.9961 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356117187.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:11 Heat of formation + Delta-G solvation = -113.975350 kcal Electronic energy + Delta-G solvation = -27945.736503 eV Core-core repulsion = 24054.344496 eV Total energy + Delta-G solvation = -3891.392008 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.81874 -39.76097 -37.96036 -37.26540 -36.84585 -35.69919 -33.51397 -32.53832 -31.49055 -30.47571 -30.05928 -28.61218 -27.45922 -24.69223 -23.18093 -22.67571 -21.57947 -20.93025 -19.80294 -18.53818 -18.10474 -17.64250 -17.51449 -17.22173 -16.79810 -16.58966 -16.35054 -16.01351 -15.62140 -15.35657 -14.82339 -14.50255 -14.31357 -14.15232 -13.97167 -13.88675 -13.86051 -13.66448 -13.54256 -13.39366 -13.21427 -13.02824 -12.97881 -12.94364 -12.84979 -12.54598 -12.50838 -12.17538 -11.92082 -11.82446 -11.68481 -11.35133 -11.31615 -10.97492 -10.65625 -10.36070 -10.02506 -9.53280 -9.18277 -8.06184 -6.07588 -0.92856 0.78834 0.85148 1.30875 1.36150 1.42310 1.90268 1.94849 2.32368 2.44374 2.77173 3.14435 3.18689 3.34802 3.50314 3.93802 4.11707 4.15460 4.20526 4.26802 4.29422 4.36793 4.42140 4.46620 4.55812 4.65204 4.66476 4.74828 4.78103 4.93996 4.97563 4.98673 5.02035 5.25230 5.27144 5.38483 5.53389 5.59834 5.63865 5.78459 5.84420 5.96485 6.17940 6.42384 6.47779 6.73784 6.99170 7.54186 7.57607 9.03265 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011235 B = 0.003836 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.547671 B = 7296.846102 C = 8081.473819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.139 3.861 3 H 0.061 0.939 4 C -0.600 4.600 5 S 2.389 3.611 6 C -0.628 4.628 7 O -1.002 7.002 8 O -0.975 6.975 9 N -0.737 5.737 10 C 0.513 3.487 11 O -0.552 6.552 12 C -0.120 4.120 13 C 0.084 3.916 14 H 0.028 0.972 15 C -0.488 4.488 16 H 0.038 0.962 17 C 0.028 3.972 18 N -0.913 5.913 19 Si 0.927 3.073 20 H -0.288 1.288 21 H -0.281 1.281 22 H -0.267 1.267 23 C -0.045 4.045 24 C -0.130 4.130 25 C -0.126 4.126 26 C -0.147 4.147 27 C -0.127 4.127 28 C -0.141 4.141 29 H 0.086 0.914 30 H 0.031 0.969 31 H 0.090 0.910 32 H 0.185 0.815 33 H 0.185 0.815 34 H 0.157 0.843 35 H 0.131 0.869 36 H 0.164 0.836 37 H 0.416 0.584 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.255 0.745 41 H 0.109 0.891 42 H 0.139 0.861 43 H 0.145 0.855 44 H 0.134 0.866 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.269 -17.115 -16.269 23.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.033 3.967 3 H 0.079 0.921 4 C -0.731 4.731 5 S 2.578 3.422 6 C -0.781 4.781 7 O -1.000 7.000 8 O -0.972 6.972 9 N -0.395 5.395 10 C 0.300 3.700 11 O -0.427 6.427 12 C -0.160 4.160 13 C 0.065 3.935 14 H 0.047 0.953 15 C -0.526 4.526 16 H 0.057 0.943 17 C -0.171 4.171 18 N -0.553 5.553 19 Si 0.754 3.246 20 H -0.215 1.215 21 H -0.207 1.207 22 H -0.192 1.192 23 C -0.045 4.045 24 C -0.148 4.148 25 C -0.144 4.144 26 C -0.164 4.164 27 C -0.145 4.145 28 C -0.160 4.160 29 H 0.105 0.895 30 H 0.050 0.950 31 H 0.109 0.891 32 H 0.203 0.797 33 H 0.202 0.798 34 H 0.175 0.825 35 H 0.150 0.850 36 H 0.182 0.818 37 H 0.254 0.746 38 H 0.114 0.886 39 H 0.107 0.893 40 H 0.064 0.936 41 H 0.127 0.873 42 H 0.157 0.843 43 H 0.163 0.837 44 H 0.152 0.848 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.943 -15.722 -15.489 22.156 hybrid contribution 0.182 0.960 -0.644 1.170 sum -1.761 -14.762 -16.132 21.938 Atomic orbital electron populations 1.22077 0.92346 1.03818 1.02443 1.20615 0.97259 0.96146 0.82656 0.92086 1.30524 1.23534 1.13307 1.05714 1.08302 0.79528 0.75317 0.79020 1.30054 1.13255 1.16083 1.18750 1.93557 1.80382 1.38156 1.87870 1.93546 1.79908 1.71713 1.52008 1.46299 1.69061 1.14951 1.09219 1.21028 0.76425 0.87071 0.85459 1.90735 1.49121 1.17625 1.85249 1.21714 1.02194 0.98958 0.93157 1.17610 0.97180 0.90971 0.87777 0.95341 1.20934 1.04870 0.93852 1.32944 0.94326 1.25401 0.96449 1.00322 0.94920 1.70025 1.30339 1.19934 1.34968 0.86101 0.80425 0.80079 0.77987 1.21470 1.20654 1.19161 1.20533 0.93965 0.92703 0.97312 1.21026 0.96039 0.98949 0.98805 1.21352 1.00175 0.99598 0.93287 1.21264 0.93947 1.01743 0.99477 1.21296 0.97781 0.98190 0.97190 1.21093 0.99531 1.00477 0.94878 0.89464 0.95022 0.89105 0.79725 0.79751 0.82518 0.85008 0.81770 0.74598 0.88592 0.89274 0.93639 0.87297 0.84278 0.83700 0.84781 0.88588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.16 9.48 71.98 0.68 -2.48 16 2 C 0.14 3.55 2.63 45.00 0.12 3.67 16 3 H 0.06 2.09 7.58 -2.39 -0.02 2.07 16 4 C -0.60 -6.92 5.37 71.98 0.39 -6.53 16 5 S 2.39 45.41 5.24 -56.49 -0.30 45.12 16 6 C -0.63 -3.38 10.62 113.37 1.20 -2.17 16 7 O -1.00 -32.04 18.10 -127.37 -2.30 -34.34 16 8 O -0.97 -26.42 16.46 -127.37 -2.10 -28.52 16 9 N -0.74 -22.89 4.07 -442.53 -1.80 -24.69 16 10 C 0.51 22.49 7.54 87.66 0.66 23.15 16 11 O -0.55 -30.38 14.65 -3.04 -0.04 -30.43 16 12 C -0.12 -5.14 4.95 29.85 0.15 -5.00 16 13 C 0.08 4.41 1.67 -12.29 -0.02 4.39 16 14 H 0.03 1.72 6.98 -2.39 -0.02 1.70 16 15 C -0.49 -29.00 6.37 25.60 0.16 -28.83 16 16 H 0.04 2.32 7.82 -2.91 -0.02 2.30 16 17 C 0.03 1.73 5.45 84.65 0.46 2.19 16 18 N -0.91 -58.26 12.87 21.45 0.28 -57.98 16 19 Si 0.93 49.90 29.54 68.60 2.03 51.92 16 20 H -0.29 -15.98 7.11 99.48 0.71 -15.28 16 21 H -0.28 -14.63 7.11 99.48 0.71 -13.93 16 22 H -0.27 -13.64 7.11 99.48 0.71 -12.94 16 23 C -0.04 -2.11 4.77 -19.86 -0.09 -2.20 16 24 C -0.13 -5.49 8.86 22.27 0.20 -5.29 16 25 C -0.13 -4.39 10.05 22.27 0.22 -4.16 16 26 C -0.15 -4.75 10.05 22.27 0.22 -4.53 16 27 C -0.13 -4.58 10.05 22.27 0.22 -4.36 16 28 C -0.14 -6.29 9.67 22.27 0.22 -6.07 16 29 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.19 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.18 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.16 0.02 8.14 -2.39 -0.02 0.00 16 35 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.16 -0.20 8.14 -2.39 -0.02 -0.22 16 37 H 0.42 9.99 7.77 -92.71 -0.72 9.27 16 38 H 0.10 3.44 8.14 -2.38 -0.02 3.42 16 39 H 0.09 3.65 7.77 -2.39 -0.02 3.64 16 40 H 0.25 15.68 8.31 -92.71 -0.77 14.91 16 41 H 0.11 4.59 7.76 -2.91 -0.02 4.57 16 42 H 0.14 3.86 8.06 -2.91 -0.02 3.83 16 43 H 0.15 3.54 8.06 -2.92 -0.02 3.52 16 44 H 0.13 3.99 8.06 -2.91 -0.02 3.97 16 45 H 0.10 4.47 7.95 -2.91 -0.02 4.44 16 Total: -1.00 -97.27 389.16 0.81 -96.46 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: 0.26 Total: 20.71 kcal Atomic # 6 Polarization: -43.03 SS G_CDS: 4.79 Total: -38.24 kcal Atomic # 7 Polarization: -81.15 SS G_CDS: -1.53 Total: -82.68 kcal Atomic # 8 Polarization: -88.85 SS G_CDS: -4.45 Total: -93.29 kcal Atomic # 14 Polarization: 49.90 SS G_CDS: 2.03 Total: 51.92 kcal Atomic # 16 Polarization: 45.41 SS G_CDS: -0.30 Total: 45.12 kcal Total: -97.27 0.81 -96.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356117187.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.520 kcal (2) G-P(sol) polarization free energy of solvation -97.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds