Wall clock time and date at job start Sat Apr 11 2020 05:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47185 * 2 1 4 4 C 1.52992 * 109.47457 * 239.99459 * 2 1 3 5 5 S 1.81404 * 109.47530 * 179.97438 * 4 2 1 6 6 C 1.81395 * 101.92536 * 180.02562 * 5 4 2 7 7 O 1.42101 * 108.57543 * 294.49095 * 5 4 2 8 8 O 1.42099 * 108.57695 * 65.51336 * 5 4 2 9 9 N 1.46505 * 109.47200 * 119.99362 * 2 1 3 10 10 C 1.34770 * 120.00096 * 275.00511 * 9 2 1 11 11 O 1.21282 * 120.00471 * 359.97438 * 10 9 2 12 12 C 1.50700 * 120.00252 * 179.97438 * 10 9 2 13 13 C 1.52994 * 109.47505 * 179.97438 * 12 10 9 14 14 H 1.08997 * 109.47674 * 305.00018 * 13 12 10 15 15 C 1.50703 * 109.47113 * 64.99927 * 13 12 10 16 16 H 1.08004 * 120.00335 * 234.68120 * 15 13 12 17 17 C 1.37878 * 120.00054 * 54.67764 * 15 13 12 18 18 N 1.31520 * 119.99983 * 4.87392 * 17 15 13 19 19 Si 1.86799 * 120.00119 * 184.87211 * 17 15 13 20 20 H 1.48503 * 109.46824 * 90.00377 * 19 17 15 21 21 H 1.48506 * 109.46963 * 209.99682 * 19 17 15 22 22 H 1.48492 * 109.47102 * 330.00222 * 19 17 15 23 23 C 1.50702 * 109.47489 * 184.99687 * 13 12 10 24 24 C 1.38228 * 120.00094 * 151.48717 * 23 13 12 25 25 C 1.38237 * 119.99925 * 179.79258 * 24 23 13 26 26 C 1.38237 * 120.00138 * 0.43671 * 25 24 23 27 27 C 1.38232 * 119.99672 * 359.81753 * 26 25 24 28 28 C 1.38237 * 120.00308 * 359.97243 * 27 26 25 29 29 H 1.08997 * 109.47353 * 300.00370 * 1 2 3 30 30 H 1.08995 * 109.47010 * 60.00637 * 1 2 3 31 31 H 1.08995 * 109.46662 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47598 * 300.00387 * 4 2 1 33 33 H 1.09007 * 109.46802 * 60.00235 * 4 2 1 34 34 H 1.09004 * 109.47139 * 59.99964 * 6 5 4 35 35 H 1.08996 * 109.47253 * 179.97438 * 6 5 4 36 36 H 1.08999 * 109.47019 * 300.00209 * 6 5 4 37 37 H 0.97003 * 119.99743 * 94.99907 * 9 2 1 38 38 H 1.09003 * 109.47082 * 59.99639 * 12 10 9 39 39 H 1.09003 * 109.46891 * 300.00039 * 12 10 9 40 40 H 0.97002 * 120.00077 * 179.97438 * 18 17 15 41 41 H 1.07996 * 120.00271 * 359.97438 * 24 23 13 42 42 H 1.08005 * 120.00065 * 180.27503 * 25 24 23 43 43 H 1.07997 * 120.00455 * 179.83127 * 26 25 24 44 44 H 1.08001 * 119.99970 * 179.97438 * 27 26 25 45 45 H 1.08001 * 120.00535 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 16 3.8541 -0.7207 -1.2495 6 6 4.2289 -1.6076 -2.7868 7 8 4.3062 0.6202 -1.3792 8 8 4.3073 -1.5027 -0.1530 9 7 2.0184 -0.6905 1.1963 10 6 2.1470 -0.0181 2.3572 11 8 1.8589 1.1588 2.4115 12 6 2.6488 -0.7285 3.5879 13 6 2.7009 0.2549 4.7588 14 1 3.3029 1.1198 4.4805 15 6 1.3035 0.7043 5.0999 16 1 1.0665 1.7577 5.1271 17 6 0.3274 -0.2292 5.3770 18 7 0.6369 -1.5060 5.4381 19 14 -1.4347 0.3195 5.6658 20 1 -2.1663 0.3351 4.3736 21 1 -2.1001 -0.6240 6.5999 22 1 -1.4385 1.6832 6.2534 23 6 3.3171 -0.4218 5.9561 24 6 4.0034 0.3253 6.8950 25 6 4.5650 -0.2949 7.9955 26 6 4.4479 -1.6633 8.1523 27 6 3.7661 -2.4111 7.2106 28 6 3.2008 -1.7904 6.1124 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3632 -1.0276 0.0005 32 1 1.6767 -1.7490 -1.2491 33 1 1.6767 -0.2075 -2.1392 34 1 3.8008 -1.0677 -3.6314 35 1 5.3094 -1.6784 -2.9112 36 1 3.8016 -2.6093 -2.7417 37 1 2.2490 -1.6317 1.1528 38 1 3.6479 -1.1210 3.3988 39 1 1.9759 -1.5503 3.8327 40 1 -0.0497 -2.1627 5.6335 41 1 4.0984 1.3938 6.7704 42 1 5.0974 0.2894 8.7314 43 1 4.8890 -2.1482 9.0107 44 1 3.6751 -3.4803 7.3329 45 1 2.6685 -2.3746 5.3764 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356117189.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:15 Heat of formation + Delta-G solvation = -78.773017 kcal Electronic energy + Delta-G solvation = -28200.916594 eV Core-core repulsion = 24311.051074 eV Total energy + Delta-G solvation = -3889.865520 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.17995 -38.06310 -37.06987 -36.14458 -35.73051 -34.05985 -31.39897 -30.90479 -29.91813 -29.72445 -28.22912 -27.74266 -25.75078 -22.84448 -21.65012 -21.14018 -20.02682 -19.24309 -18.95424 -16.93073 -16.69982 -16.48183 -16.15455 -15.85559 -15.48044 -15.29355 -14.82813 -14.15073 -13.83223 -13.76430 -13.61447 -13.52163 -13.40776 -13.04198 -12.91170 -12.74756 -12.44013 -12.15893 -12.12273 -12.07155 -12.03767 -11.55141 -11.41809 -11.35506 -11.24332 -11.06891 -10.86979 -10.75200 -10.57866 -10.33512 -10.09516 -9.87820 -9.22307 -9.11566 -8.75334 -8.57005 -8.35107 -7.72884 -7.36567 -5.91894 -4.01525 -0.22818 2.56399 2.57388 2.66044 3.33063 3.38814 3.45028 3.47721 3.61064 3.71957 3.89578 4.33011 4.46593 4.47284 4.49020 4.80641 5.05473 5.13161 5.30057 5.30235 5.40081 5.41680 5.71671 5.87939 5.90961 5.98291 6.07750 6.19973 6.36647 6.49147 6.55588 6.69237 6.79669 6.85900 6.98528 7.22247 7.24427 7.34159 7.55526 7.61981 7.76762 7.99195 8.14423 8.25780 8.25879 8.41829 8.95197 9.22333 9.61076 11.02055 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012114 B = 0.003967 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.857796 B = 7057.051032 C = 8555.235993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.157 3.843 3 H 0.100 0.900 4 C -0.623 4.623 5 S 2.420 3.580 6 C -0.663 4.663 7 O -0.935 6.935 8 O -0.923 6.923 9 N -0.755 5.755 10 C 0.530 3.470 11 O -0.524 6.524 12 C -0.139 4.139 13 C 0.086 3.914 14 H 0.038 0.962 15 C -0.468 4.468 16 H 0.059 0.941 17 C 0.059 3.941 18 N -0.890 5.890 19 Si 0.891 3.109 20 H -0.284 1.284 21 H -0.289 1.289 22 H -0.275 1.275 23 C -0.026 4.026 24 C -0.132 4.132 25 C -0.142 4.142 26 C -0.155 4.155 27 C -0.143 4.143 28 C -0.067 4.067 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.136 0.864 33 H 0.142 0.858 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.401 0.599 38 H 0.059 0.941 39 H 0.133 0.867 40 H 0.259 0.741 41 H 0.105 0.895 42 H 0.100 0.900 43 H 0.098 0.902 44 H 0.101 0.899 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.959 -5.380 -15.398 16.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.050 3.950 3 H 0.118 0.882 4 C -0.752 4.752 5 S 2.600 3.400 6 C -0.812 4.812 7 O -0.932 6.932 8 O -0.920 6.920 9 N -0.412 5.412 10 C 0.319 3.681 11 O -0.398 6.398 12 C -0.179 4.179 13 C 0.067 3.933 14 H 0.056 0.944 15 C -0.505 4.505 16 H 0.077 0.923 17 C -0.140 4.140 18 N -0.529 5.529 19 Si 0.720 3.280 20 H -0.210 1.210 21 H -0.215 1.215 22 H -0.200 1.200 23 C -0.026 4.026 24 C -0.150 4.150 25 C -0.160 4.160 26 C -0.173 4.173 27 C -0.162 4.162 28 C -0.086 4.086 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.155 0.845 33 H 0.160 0.840 34 H 0.144 0.856 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.237 0.763 38 H 0.077 0.923 39 H 0.150 0.850 40 H 0.070 0.930 41 H 0.123 0.877 42 H 0.119 0.881 43 H 0.116 0.884 44 H 0.119 0.881 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.242 -4.303 -14.694 15.888 hybrid contribution -1.730 -0.738 -0.468 1.938 sum 2.512 -5.041 -15.161 16.174 Atomic orbital electron populations 1.22123 0.94015 1.02351 1.02916 1.20369 0.95956 0.97099 0.81558 0.88160 1.30689 1.26364 1.10735 1.07364 1.08019 0.78357 0.76325 0.77299 1.30369 1.12369 1.15266 1.23157 1.93613 1.78752 1.34264 1.86546 1.93619 1.78537 1.71590 1.48232 1.46537 1.70421 1.14562 1.09712 1.21197 0.75914 0.87340 0.83660 1.90613 1.48530 1.16409 1.84204 1.21944 1.00874 1.03110 0.91997 1.17656 0.95717 0.92365 0.87567 0.94352 1.20994 0.92369 0.93200 1.43962 0.92290 1.24883 0.98645 0.95047 0.95427 1.69693 1.32565 1.00395 1.50285 0.86587 0.85169 0.78536 0.77713 1.21004 1.21510 1.20041 1.20326 0.91350 0.93398 0.97558 1.20897 0.99847 0.99020 0.95238 1.20791 1.02391 0.94644 0.98193 1.20754 1.02817 0.94289 0.99422 1.21038 1.00215 0.98593 0.96312 1.21364 0.94549 0.94997 0.97678 0.90759 0.92125 0.92355 0.84536 0.84019 0.85598 0.85341 0.85401 0.76339 0.92282 0.84987 0.93024 0.87667 0.88141 0.88357 0.88126 0.84247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.48 37.16 0.35 -1.67 16 2 C 0.16 2.14 2.63 -67.93 -0.18 1.96 16 3 H 0.10 1.56 7.58 -51.93 -0.39 1.16 16 4 C -0.62 -4.90 5.37 37.15 0.20 -4.70 16 5 S 2.42 23.36 5.24 -107.50 -0.56 22.80 16 6 C -0.66 -3.22 10.62 101.05 1.07 -2.15 16 7 O -0.93 -13.18 18.10 -57.83 -1.05 -14.23 16 8 O -0.92 -12.35 16.46 -57.83 -0.95 -13.30 16 9 N -0.75 -12.55 4.07 -53.81 -0.22 -12.77 16 10 C 0.53 11.49 7.54 -10.99 -0.08 11.41 16 11 O -0.52 -13.05 14.65 5.56 0.08 -12.97 16 12 C -0.14 -3.11 4.07 -27.89 -0.11 -3.23 16 13 C 0.09 2.14 1.97 -92.92 -0.18 1.95 16 14 H 0.04 0.97 7.91 -51.93 -0.41 0.56 16 15 C -0.47 -12.70 7.27 -34.44 -0.25 -12.95 16 16 H 0.06 1.69 7.82 -52.48 -0.41 1.28 16 17 C 0.06 1.57 5.12 -17.82 -0.09 1.48 16 18 N -0.89 -22.83 7.99 55.43 0.44 -22.38 16 19 Si 0.89 21.57 29.54 -169.99 -5.02 16.54 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 C -0.03 -0.61 4.69 -104.62 -0.49 -1.10 16 24 C -0.13 -2.91 9.71 -39.59 -0.38 -3.30 16 25 C -0.14 -2.83 10.05 -39.58 -0.40 -3.22 16 26 C -0.15 -3.00 10.05 -39.58 -0.40 -3.40 16 27 C -0.14 -2.93 10.05 -39.58 -0.40 -3.33 16 28 C -0.07 -1.52 7.45 -39.58 -0.30 -1.82 16 29 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.14 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.14 0.64 8.14 -51.92 -0.42 0.22 16 34 H 0.13 0.36 8.14 -51.92 -0.42 -0.07 16 35 H 0.13 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.13 0.36 8.14 -51.92 -0.42 -0.06 16 37 H 0.40 5.75 7.78 -40.82 -0.32 5.43 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.13 3.06 4.71 -51.93 -0.24 2.82 16 40 H 0.26 6.51 8.31 -40.82 -0.34 6.17 16 41 H 0.11 2.21 8.06 -52.49 -0.42 1.79 16 42 H 0.10 1.71 8.06 -52.48 -0.42 1.29 16 43 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 44 H 0.10 1.82 8.06 -52.49 -0.42 1.39 16 45 H 0.14 3.21 5.18 -52.49 -0.27 2.93 16 LS Contribution 378.22 15.07 5.70 5.70 Total: -1.00 -35.53 378.22 -9.89 -45.42 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -6.68 Total: 9.25 kcal Atomic # 6 Polarization: -22.43 SS G_CDS: -1.64 Total: -24.07 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: 0.22 Total: -35.15 kcal Atomic # 8 Polarization: -38.58 SS G_CDS: -1.92 Total: -40.50 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 23.36 SS G_CDS: -0.56 Total: 22.80 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.53 -9.89 -45.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356117189.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.353 kcal (2) G-P(sol) polarization free energy of solvation -35.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds