Wall clock time and date at job start Sat Apr 11 2020 05:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47185 * 2 1 4 4 C 1.52992 * 109.47457 * 239.99459 * 2 1 3 5 5 S 1.81404 * 109.47530 * 179.97438 * 4 2 1 6 6 C 1.81395 * 101.92536 * 180.02562 * 5 4 2 7 7 O 1.42101 * 108.57543 * 294.49095 * 5 4 2 8 8 O 1.42099 * 108.57695 * 65.51336 * 5 4 2 9 9 N 1.46505 * 109.47200 * 119.99362 * 2 1 3 10 10 C 1.34770 * 120.00096 * 275.00511 * 9 2 1 11 11 O 1.21282 * 120.00471 * 359.97438 * 10 9 2 12 12 C 1.50700 * 120.00252 * 179.97438 * 10 9 2 13 13 C 1.52994 * 109.47505 * 179.97438 * 12 10 9 14 14 H 1.08997 * 109.47674 * 305.00018 * 13 12 10 15 15 C 1.50703 * 109.47113 * 64.99927 * 13 12 10 16 16 H 1.08004 * 120.00335 * 234.68120 * 15 13 12 17 17 C 1.37878 * 120.00054 * 54.67764 * 15 13 12 18 18 N 1.31520 * 119.99983 * 4.87392 * 17 15 13 19 19 Si 1.86799 * 120.00119 * 184.87211 * 17 15 13 20 20 H 1.48503 * 109.46824 * 90.00377 * 19 17 15 21 21 H 1.48506 * 109.46963 * 209.99682 * 19 17 15 22 22 H 1.48492 * 109.47102 * 330.00222 * 19 17 15 23 23 C 1.50702 * 109.47489 * 184.99687 * 13 12 10 24 24 C 1.38228 * 120.00094 * 151.48717 * 23 13 12 25 25 C 1.38237 * 119.99925 * 179.79258 * 24 23 13 26 26 C 1.38237 * 120.00138 * 0.43671 * 25 24 23 27 27 C 1.38232 * 119.99672 * 359.81753 * 26 25 24 28 28 C 1.38237 * 120.00308 * 359.97243 * 27 26 25 29 29 H 1.08997 * 109.47353 * 300.00370 * 1 2 3 30 30 H 1.08995 * 109.47010 * 60.00637 * 1 2 3 31 31 H 1.08995 * 109.46662 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47598 * 300.00387 * 4 2 1 33 33 H 1.09007 * 109.46802 * 60.00235 * 4 2 1 34 34 H 1.09004 * 109.47139 * 59.99964 * 6 5 4 35 35 H 1.08996 * 109.47253 * 179.97438 * 6 5 4 36 36 H 1.08999 * 109.47019 * 300.00209 * 6 5 4 37 37 H 0.97003 * 119.99743 * 94.99907 * 9 2 1 38 38 H 1.09003 * 109.47082 * 59.99639 * 12 10 9 39 39 H 1.09003 * 109.46891 * 300.00039 * 12 10 9 40 40 H 0.97002 * 120.00077 * 179.97438 * 18 17 15 41 41 H 1.07996 * 120.00271 * 359.97438 * 24 23 13 42 42 H 1.08005 * 120.00065 * 180.27503 * 25 24 23 43 43 H 1.07997 * 120.00455 * 179.83127 * 26 25 24 44 44 H 1.08001 * 119.99970 * 179.97438 * 27 26 25 45 45 H 1.08001 * 120.00535 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 16 3.8541 -0.7207 -1.2495 6 6 4.2289 -1.6076 -2.7868 7 8 4.3062 0.6202 -1.3792 8 8 4.3073 -1.5027 -0.1530 9 7 2.0184 -0.6905 1.1963 10 6 2.1470 -0.0181 2.3572 11 8 1.8589 1.1588 2.4115 12 6 2.6488 -0.7285 3.5879 13 6 2.7009 0.2549 4.7588 14 1 3.3029 1.1198 4.4805 15 6 1.3035 0.7043 5.0999 16 1 1.0665 1.7577 5.1271 17 6 0.3274 -0.2292 5.3770 18 7 0.6369 -1.5060 5.4381 19 14 -1.4347 0.3195 5.6658 20 1 -2.1663 0.3351 4.3736 21 1 -2.1001 -0.6240 6.5999 22 1 -1.4385 1.6832 6.2534 23 6 3.3171 -0.4218 5.9561 24 6 4.0034 0.3253 6.8950 25 6 4.5650 -0.2949 7.9955 26 6 4.4479 -1.6633 8.1523 27 6 3.7661 -2.4111 7.2106 28 6 3.2008 -1.7904 6.1124 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3632 -1.0276 0.0005 32 1 1.6767 -1.7490 -1.2491 33 1 1.6767 -0.2075 -2.1392 34 1 3.8008 -1.0677 -3.6314 35 1 5.3094 -1.6784 -2.9112 36 1 3.8016 -2.6093 -2.7417 37 1 2.2490 -1.6317 1.1528 38 1 3.6479 -1.1210 3.3988 39 1 1.9759 -1.5503 3.8327 40 1 -0.0497 -2.1627 5.6335 41 1 4.0984 1.3938 6.7704 42 1 5.0974 0.2894 8.7314 43 1 4.8890 -2.1482 9.0107 44 1 3.6751 -3.4803 7.3329 45 1 2.6685 -2.3746 5.3764 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356117189.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:14 Heat of formation + Delta-G solvation = -104.390550 kcal Electronic energy + Delta-G solvation = -28202.027453 eV Core-core repulsion = 24311.051074 eV Total energy + Delta-G solvation = -3890.976380 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.81183 -39.70223 -37.94665 -37.26701 -36.84966 -35.91060 -33.07373 -32.50741 -31.39014 -30.43125 -29.86733 -28.62173 -27.66710 -24.59734 -23.17521 -22.54966 -21.59251 -20.92726 -19.79099 -18.46014 -17.86039 -17.63658 -17.49736 -17.12002 -16.85822 -16.73599 -16.40144 -15.79851 -15.48249 -15.37991 -14.70008 -14.56308 -14.49011 -14.11137 -13.87529 -13.80854 -13.78393 -13.57216 -13.38506 -13.28504 -13.14013 -13.02504 -12.97646 -12.93868 -12.80516 -12.68759 -12.29361 -12.14982 -11.92244 -11.86450 -11.68186 -11.34868 -11.06809 -11.04893 -10.63119 -10.29040 -10.00993 -9.39633 -9.11187 -7.92908 -6.09364 -0.91618 0.89298 1.00788 1.36222 1.38005 1.47360 1.90914 2.00751 2.37239 2.45713 2.76396 3.16560 3.20355 3.38308 3.50483 3.93163 4.13381 4.19556 4.22387 4.30883 4.34916 4.41839 4.46660 4.52925 4.66527 4.70660 4.75574 4.81172 4.90269 4.97939 5.00398 5.08965 5.15165 5.25277 5.38520 5.53917 5.58817 5.66413 5.68464 5.90399 5.94834 6.09831 6.36633 6.43114 6.58710 6.73758 6.85304 7.51965 7.57911 8.96784 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012114 B = 0.003967 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.857796 B = 7057.051032 C = 8555.235993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.141 3.859 3 H 0.071 0.929 4 C -0.605 4.605 5 S 2.397 3.603 6 C -0.629 4.629 7 O -0.996 6.996 8 O -0.976 6.976 9 N -0.740 5.740 10 C 0.522 3.478 11 O -0.568 6.568 12 C -0.131 4.131 13 C 0.086 3.914 14 H 0.010 0.990 15 C -0.490 4.490 16 H 0.027 0.973 17 C 0.035 3.965 18 N -0.885 5.885 19 Si 0.932 3.068 20 H -0.283 1.283 21 H -0.277 1.277 22 H -0.286 1.286 23 C -0.051 4.051 24 C -0.154 4.154 25 C -0.140 4.140 26 C -0.148 4.148 27 C -0.146 4.146 28 C -0.081 4.081 29 H 0.025 0.975 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.178 0.822 33 H 0.187 0.813 34 H 0.157 0.843 35 H 0.134 0.866 36 H 0.161 0.839 37 H 0.414 0.586 38 H 0.068 0.932 39 H 0.127 0.873 40 H 0.262 0.738 41 H 0.101 0.899 42 H 0.133 0.867 43 H 0.138 0.862 44 H 0.128 0.872 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.694 -8.394 -16.922 19.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.036 3.964 3 H 0.089 0.911 4 C -0.734 4.734 5 S 2.586 3.414 6 C -0.782 4.782 7 O -0.994 6.994 8 O -0.973 6.973 9 N -0.396 5.396 10 C 0.311 3.689 11 O -0.446 6.446 12 C -0.171 4.171 13 C 0.067 3.933 14 H 0.028 0.972 15 C -0.528 4.528 16 H 0.045 0.955 17 C -0.164 4.164 18 N -0.524 5.524 19 Si 0.760 3.240 20 H -0.209 1.209 21 H -0.202 1.202 22 H -0.212 1.212 23 C -0.052 4.052 24 C -0.172 4.172 25 C -0.157 4.157 26 C -0.166 4.166 27 C -0.164 4.164 28 C -0.100 4.100 29 H 0.045 0.955 30 H 0.113 0.887 31 H 0.096 0.904 32 H 0.196 0.804 33 H 0.204 0.796 34 H 0.176 0.824 35 H 0.152 0.848 36 H 0.179 0.821 37 H 0.251 0.749 38 H 0.086 0.914 39 H 0.145 0.855 40 H 0.072 0.928 41 H 0.119 0.881 42 H 0.151 0.849 43 H 0.156 0.844 44 H 0.146 0.854 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.993 -7.342 -16.203 18.232 hybrid contribution -1.598 0.154 -0.079 1.607 sum 2.396 -7.188 -16.282 17.959 Atomic orbital electron populations 1.22092 0.93238 1.03366 1.02284 1.20603 0.96691 0.96466 0.82666 0.91109 1.30554 1.24215 1.13032 1.05638 1.08114 0.79063 0.75364 0.78887 1.30059 1.13341 1.16012 1.18826 1.93545 1.80166 1.37802 1.87849 1.93557 1.79757 1.71839 1.52135 1.46332 1.68916 1.14986 1.09396 1.21130 0.75792 0.86899 0.85049 1.90584 1.50668 1.18154 1.85190 1.21785 1.01223 1.02184 0.91935 1.17546 0.94279 0.92179 0.89277 0.97169 1.20903 0.94309 0.91860 1.45761 0.95507 1.25241 1.00533 0.95359 0.95311 1.69778 1.32934 1.00193 1.49476 0.85959 0.82557 0.77829 0.77611 1.20941 1.20206 1.21186 1.20301 0.93004 0.94312 0.97589 1.21073 1.00752 0.99104 0.96268 1.21155 1.01468 0.95489 0.97634 1.21204 1.01443 0.93982 0.99960 1.21370 0.99398 1.00157 0.95467 1.21322 0.95520 0.94389 0.98726 0.95530 0.88671 0.90408 0.80408 0.79585 0.82424 0.84772 0.82109 0.74902 0.91361 0.85509 0.92768 0.88096 0.84944 0.84434 0.85398 0.85197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.82 9.48 71.98 0.68 -3.14 16 2 C 0.14 3.84 2.63 44.99 0.12 3.96 16 3 H 0.07 2.35 7.58 -2.38 -0.02 2.33 16 4 C -0.60 -7.65 5.37 71.98 0.39 -7.26 16 5 S 2.40 43.88 5.24 -56.49 -0.30 43.59 16 6 C -0.63 -3.25 10.62 113.37 1.20 -2.04 16 7 O -1.00 -29.20 18.10 -127.37 -2.30 -31.50 16 8 O -0.98 -26.49 16.46 -127.37 -2.10 -28.59 16 9 N -0.74 -25.40 4.07 -442.54 -1.80 -27.20 16 10 C 0.52 24.23 7.54 87.66 0.66 24.89 16 11 O -0.57 -30.82 14.65 -3.04 -0.04 -30.87 16 12 C -0.13 -6.23 4.07 29.85 0.12 -6.11 16 13 C 0.09 4.59 1.97 -12.29 -0.02 4.57 16 14 H 0.01 0.56 7.91 -2.39 -0.02 0.54 16 15 C -0.49 -28.38 7.27 25.60 0.19 -28.20 16 16 H 0.03 1.66 7.82 -2.91 -0.02 1.64 16 17 C 0.03 1.91 5.12 84.65 0.43 2.34 16 18 N -0.88 -46.05 7.99 21.45 0.17 -45.88 16 19 Si 0.93 45.21 29.54 68.60 2.03 47.23 16 20 H -0.28 -13.62 7.11 99.48 0.71 -12.92 16 21 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 22 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 23 C -0.05 -2.53 4.69 -19.87 -0.09 -2.62 16 24 C -0.15 -6.97 9.71 22.27 0.22 -6.75 16 25 C -0.14 -5.32 10.05 22.27 0.22 -5.10 16 26 C -0.15 -5.30 10.05 22.27 0.22 -5.08 16 27 C -0.15 -5.68 10.05 22.27 0.22 -5.46 16 28 C -0.08 -3.69 7.45 22.27 0.17 -3.53 16 29 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.18 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.19 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.16 -0.04 8.14 -2.39 -0.02 -0.06 16 35 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.16 -0.08 8.14 -2.39 -0.02 -0.10 16 37 H 0.41 11.93 7.78 -92.71 -0.72 11.21 16 38 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 39 H 0.13 6.14 4.71 -2.39 -0.01 6.13 16 40 H 0.26 13.09 8.31 -92.71 -0.77 12.32 16 41 H 0.10 4.50 8.06 -2.91 -0.02 4.48 16 42 H 0.13 4.14 8.06 -2.91 -0.02 4.12 16 43 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 44 H 0.13 4.22 8.06 -2.91 -0.02 4.20 16 45 H 0.13 6.07 5.18 -2.91 -0.02 6.06 16 Total: -1.00 -85.81 378.22 0.66 -85.16 By element: Atomic # 1 Polarization: 27.32 SS G_CDS: 0.27 Total: 27.60 kcal Atomic # 6 Polarization: -44.27 SS G_CDS: 4.73 Total: -39.54 kcal Atomic # 7 Polarization: -71.45 SS G_CDS: -1.63 Total: -73.08 kcal Atomic # 8 Polarization: -86.51 SS G_CDS: -4.45 Total: -90.96 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Atomic # 16 Polarization: 43.88 SS G_CDS: -0.30 Total: 43.59 kcal Total: -85.81 0.66 -85.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356117189.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.233 kcal (2) G-P(sol) polarization free energy of solvation -85.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds