Wall clock time and date at job start Sat Apr 11 2020 05:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47226 * 2 1 4 4 C 1.50703 * 109.46654 * 119.99762 * 2 1 3 5 5 O 1.21253 * 120.00027 * 269.99793 * 4 2 1 6 6 C 1.47168 * 120.00037 * 90.00247 * 4 2 1 7 7 C 1.39852 * 120.17183 * 179.97438 * 6 4 2 8 8 C 1.37882 * 119.82705 * 180.02562 * 7 6 4 9 9 C 1.38411 * 120.17172 * 0.02562 * 8 7 6 10 10 S 1.76201 * 119.82680 * 179.97438 * 9 8 7 11 11 O 1.42101 * 106.39915 * 336.46089 * 10 9 8 12 12 O 1.42093 * 106.40141 * 203.54396 * 10 9 8 13 13 N 1.65593 * 107.21631 * 90.00133 * 10 9 8 14 14 C 1.46498 * 120.00388 * 269.99756 * 13 10 9 15 15 C 1.46505 * 119.99939 * 90.00236 * 13 10 9 16 16 H 1.09002 * 109.47068 * 359.97438 * 15 13 10 17 17 C 1.52997 * 109.47212 * 239.99810 * 15 13 10 18 18 C 1.50699 * 109.47262 * 119.99723 * 15 13 10 19 19 H 1.08000 * 119.99792 * 0.02562 * 18 15 13 20 20 C 1.37878 * 119.99902 * 179.97438 * 18 15 13 21 21 N 1.31515 * 120.00126 * 0.02562 * 20 18 15 22 22 Si 1.86803 * 119.99745 * 180.02562 * 20 18 15 23 23 H 1.48500 * 109.47256 * 90.00491 * 22 20 18 24 24 H 1.48506 * 109.46930 * 210.00332 * 22 20 18 25 25 H 1.48499 * 109.47104 * 330.00193 * 22 20 18 26 26 C 1.38409 * 120.34480 * 0.23547 * 9 8 7 27 27 C 1.37882 * 120.17308 * 359.48113 * 26 9 8 28 28 H 1.08992 * 109.47646 * 300.00418 * 1 2 3 29 29 H 1.09008 * 109.46880 * 60.00652 * 1 2 3 30 30 H 1.09003 * 109.47469 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46994 * 239.99366 * 2 1 3 32 32 H 1.08999 * 109.46959 * 180.02562 * 3 2 1 33 33 H 1.09008 * 109.46659 * 299.99484 * 3 2 1 34 34 H 1.08999 * 109.47525 * 59.99233 * 3 2 1 35 35 H 1.08004 * 120.08665 * 0.02562 * 7 6 4 36 36 H 1.07996 * 119.91941 * 180.02562 * 8 7 6 37 37 H 1.08992 * 109.47421 * 270.00337 * 14 13 10 38 38 H 1.09007 * 109.46720 * 30.00347 * 14 13 10 39 39 H 1.09003 * 109.47218 * 150.00128 * 14 13 10 40 40 H 1.08998 * 109.47533 * 59.99637 * 17 15 13 41 41 H 1.08996 * 109.47853 * 179.97438 * 17 15 13 42 42 H 1.09002 * 109.47153 * 300.00008 * 17 15 13 43 43 H 0.96999 * 120.00073 * 179.97438 * 21 20 18 44 44 H 1.07998 * 119.90849 * 179.72106 * 26 9 8 45 45 H 1.08005 * 120.08718 * 180.23007 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 2.2343 -0.0868 2.2506 6 6 2.2775 -2.1610 1.1942 7 6 2.7441 -2.8238 2.3339 8 6 2.9720 -4.1830 2.2917 9 6 2.7407 -4.8913 1.1252 10 16 3.0356 -6.6279 1.0813 11 8 3.9767 -6.9011 2.1104 12 8 3.2555 -6.9631 -0.2819 13 7 1.6266 -7.3757 1.5255 14 6 1.3693 -7.6752 2.9363 15 6 0.6372 -7.7380 0.5076 16 1 1.0006 -7.4383 -0.4754 17 6 -0.6831 -7.0232 0.8023 18 6 0.4170 -9.2287 0.5291 19 1 0.9595 -9.8446 1.2312 20 6 -0.4778 -9.8061 -0.3466 21 7 -1.1387 -9.0561 -1.2012 22 14 -0.7512 -11.6539 -0.3194 23 1 -1.8493 -11.9779 0.6263 24 1 -1.1169 -12.1202 -1.6811 25 1 0.4952 -12.3323 0.1181 26 6 2.2841 -4.2416 -0.0084 27 6 2.0459 -2.8838 0.0195 28 1 -0.3634 0.5138 0.8898 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9562 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 2.9254 -2.2724 3.2447 36 1 3.3319 -4.6964 3.1710 37 1 1.7566 -8.6659 3.1739 38 1 1.8642 -6.9320 3.5615 39 1 0.2957 -7.6503 3.1231 40 1 -0.5239 -5.9450 0.7868 41 1 -1.4191 -7.2924 0.0448 42 1 -1.0467 -7.3226 1.7853 43 1 -1.7679 -9.4624 -1.8176 44 1 2.1103 -4.8004 -0.9161 45 1 1.6860 -2.3789 -0.8648 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360409004.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:19 Heat of formation + Delta-G solvation = -87.648564 kcal Electronic energy + Delta-G solvation = -27837.340283 eV Core-core repulsion = 23947.089890 eV Total energy + Delta-G solvation = -3890.250393 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.48843 -38.47158 -36.81040 -36.25621 -35.34427 -34.93132 -32.64328 -31.70514 -31.20072 -29.16100 -27.53479 -25.69702 -25.63388 -25.17234 -23.21438 -22.27641 -20.79055 -19.58058 -18.74685 -17.83313 -17.06401 -16.83658 -16.28800 -16.08270 -15.40869 -15.22566 -14.90625 -14.77349 -14.36596 -14.20668 -13.72476 -13.54314 -13.41110 -13.19136 -12.98362 -12.91725 -12.74448 -12.63747 -12.41679 -12.06600 -11.83606 -11.63973 -11.51781 -11.46139 -11.41733 -11.29140 -11.19526 -11.02289 -10.86527 -10.76116 -10.47524 -10.34166 -10.05759 -9.87425 -9.49225 -9.30912 -9.19837 -8.50322 -8.04961 -6.11950 -4.18490 0.09385 0.88216 1.17458 1.98478 3.26252 3.32184 3.33644 3.38247 3.56889 3.67935 4.21816 4.36554 4.39610 4.43683 4.64703 4.66242 4.75789 4.86050 5.12308 5.15379 5.19822 5.26928 5.34491 5.40432 5.44227 5.45571 5.51869 5.59766 5.78096 5.82979 5.84345 5.92081 6.00304 6.04716 6.09001 6.29393 6.55658 6.61943 6.70255 6.74098 6.94251 7.17223 7.35072 7.56682 7.72548 7.97924 8.21199 8.83679 9.47515 10.93786 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016676 B = 0.003219 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.615234 B = 8696.185193 C = 9601.650786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.141 4.141 3 C -0.141 4.141 4 C 0.401 3.599 5 O -0.446 6.446 6 C -0.128 4.128 7 C -0.087 4.087 8 C -0.035 4.035 9 C -0.643 4.643 10 S 2.679 3.321 11 O -0.970 6.970 12 O -0.947 6.947 13 N -0.977 5.977 14 C 0.106 3.894 15 C 0.266 3.734 16 H 0.062 0.938 17 C -0.151 4.151 18 C -0.520 4.520 19 H 0.064 0.936 20 C 0.064 3.936 21 N -0.890 5.890 22 Si 0.899 3.101 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.273 1.273 26 C -0.028 4.028 27 C -0.095 4.095 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.100 0.900 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.139 0.861 36 H 0.144 0.856 37 H 0.054 0.946 38 H 0.050 0.950 39 H 0.074 0.926 40 H 0.010 0.990 41 H 0.095 0.905 42 H 0.035 0.965 43 H 0.264 0.736 44 H 0.150 0.850 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.030 16.465 2.818 16.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.160 4.160 3 C -0.198 4.198 4 C 0.278 3.722 5 O -0.320 6.320 6 C -0.129 4.129 7 C -0.106 4.106 8 C -0.054 4.054 9 C -0.726 4.726 10 S 2.767 3.233 11 O -0.960 6.960 12 O -0.938 6.938 13 N -0.818 5.818 14 C -0.040 4.040 15 C 0.164 3.836 16 H 0.079 0.921 17 C -0.210 4.210 18 C -0.559 4.559 19 H 0.082 0.918 20 C -0.138 4.138 21 N -0.529 5.529 22 Si 0.727 3.273 23 H -0.207 1.207 24 H -0.211 1.211 25 H -0.198 1.198 26 C -0.047 4.047 27 C -0.114 4.114 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.118 0.882 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.157 0.843 36 H 0.162 0.838 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.093 0.907 40 H 0.029 0.971 41 H 0.113 0.887 42 H 0.054 0.946 43 H 0.074 0.926 44 H 0.168 0.832 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.778 16.425 2.993 17.118 hybrid contribution -0.696 -0.421 0.028 0.814 sum 3.082 16.004 3.021 16.576 Atomic orbital electron populations 1.21743 0.91963 1.03163 1.03128 1.21644 0.98406 0.98084 0.97902 1.21719 1.01256 0.94033 1.02791 1.22615 0.72916 0.87561 0.89125 1.90503 1.39383 1.68560 1.33530 1.20771 1.01618 0.95161 0.95363 1.21484 0.96660 0.94422 0.98027 1.20930 0.93882 0.94098 0.96521 1.31876 1.11691 1.28930 1.00152 1.02465 0.73732 0.73310 0.73786 1.93523 1.59821 1.83784 1.58881 1.93584 1.84250 1.81889 1.34040 1.57431 1.38556 1.71043 1.14800 1.21228 1.02579 1.00103 0.80056 1.18825 0.83979 0.95478 0.85339 0.92077 1.22151 1.01484 0.95399 1.01979 1.21311 1.23827 0.91414 1.19388 0.91789 1.24898 0.95483 0.98424 0.95003 1.69847 1.26866 1.35157 1.21002 0.86482 0.78537 0.84990 0.77338 1.20652 1.21104 1.19781 1.21025 0.91813 0.94601 0.97234 1.21584 0.98185 0.94319 0.97343 0.91961 0.90987 0.91563 0.88213 0.92417 0.91612 0.91578 0.84309 0.83786 0.92772 0.93100 0.90698 0.97070 0.88687 0.94615 0.92646 0.83240 0.84166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.17 37.16 0.34 -0.71 16 2 C -0.14 -1.16 2.69 -91.77 -0.25 -1.40 16 3 C -0.14 -1.06 8.79 37.16 0.33 -0.74 16 4 C 0.40 4.49 6.17 -30.68 -0.19 4.31 16 5 O -0.45 -6.05 16.17 5.58 0.09 -5.96 16 6 C -0.13 -1.55 5.87 -105.06 -0.62 -2.17 16 7 C -0.09 -1.11 9.60 -39.11 -0.38 -1.48 16 8 C -0.04 -0.49 9.50 -39.65 -0.38 -0.86 16 9 C -0.64 -10.01 5.98 -39.45 -0.24 -10.25 16 10 S 2.68 50.42 5.64 -107.50 -0.61 49.82 16 11 O -0.97 -19.01 16.34 -57.17 -0.93 -19.95 16 12 O -0.95 -20.67 15.82 -57.17 -0.90 -21.57 16 13 N -0.98 -19.38 3.06 -115.85 -0.35 -19.73 16 14 C 0.11 1.80 9.53 59.85 0.57 2.37 16 15 C 0.27 6.20 2.62 -69.08 -0.18 6.02 16 16 H 0.06 1.55 6.91 -51.93 -0.36 1.19 16 17 C -0.15 -3.26 8.95 37.16 0.33 -2.93 16 18 C -0.52 -13.48 8.37 -34.44 -0.29 -13.77 16 19 H 0.06 1.65 7.65 -52.49 -0.40 1.25 16 20 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 21 N -0.89 -23.87 11.32 55.43 0.63 -23.24 16 22 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 26 C -0.03 -0.40 9.50 -39.65 -0.38 -0.77 16 27 C -0.10 -1.11 9.36 -39.11 -0.37 -1.48 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.42 8.14 -51.92 -0.42 -0.01 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.10 0.66 6.47 -51.93 -0.34 0.32 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 34 H 0.07 0.56 7.86 -51.93 -0.41 0.15 16 35 H 0.14 1.58 7.65 -52.48 -0.40 1.18 16 36 H 0.14 1.76 7.60 -52.49 -0.40 1.37 16 37 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.05 0.71 7.79 -51.92 -0.40 0.30 16 39 H 0.07 1.22 6.43 -51.93 -0.33 0.89 16 40 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 41 H 0.09 2.28 6.07 -51.93 -0.32 1.97 16 42 H 0.03 0.73 6.66 -51.93 -0.35 0.39 16 43 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 44 H 0.15 2.09 7.59 -52.49 -0.40 1.70 16 45 H 0.14 1.17 6.36 -52.48 -0.33 0.83 16 LS Contribution 380.97 15.07 5.74 5.74 Total: -1.00 -31.51 380.97 -9.67 -41.18 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -6.53 Total: 0.45 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: -1.78 Total: -22.29 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: 0.27 Total: -42.97 kcal Atomic # 8 Polarization: -45.73 SS G_CDS: -1.75 Total: -47.48 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 50.42 SS G_CDS: -0.61 Total: 49.82 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.51 -9.67 -41.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360409004.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.467 kcal (2) G-P(sol) polarization free energy of solvation -31.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds