Wall clock time and date at job start Sat Apr 11 2020 05:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47226 * 2 1 4 4 C 1.50703 * 109.46654 * 119.99762 * 2 1 3 5 5 O 1.21253 * 120.00027 * 269.99793 * 4 2 1 6 6 C 1.47168 * 120.00037 * 90.00247 * 4 2 1 7 7 C 1.39852 * 120.17183 * 179.97438 * 6 4 2 8 8 C 1.37882 * 119.82705 * 180.02562 * 7 6 4 9 9 C 1.38411 * 120.17172 * 0.02562 * 8 7 6 10 10 S 1.76201 * 119.82680 * 179.97438 * 9 8 7 11 11 O 1.42101 * 106.39915 * 336.46089 * 10 9 8 12 12 O 1.42093 * 106.40141 * 203.54396 * 10 9 8 13 13 N 1.65593 * 107.21631 * 90.00133 * 10 9 8 14 14 C 1.46498 * 120.00388 * 269.99756 * 13 10 9 15 15 C 1.46505 * 119.99939 * 90.00236 * 13 10 9 16 16 H 1.09002 * 109.47068 * 359.97438 * 15 13 10 17 17 C 1.52997 * 109.47212 * 239.99810 * 15 13 10 18 18 C 1.50699 * 109.47262 * 119.99723 * 15 13 10 19 19 H 1.08000 * 119.99792 * 0.02562 * 18 15 13 20 20 C 1.37878 * 119.99902 * 179.97438 * 18 15 13 21 21 N 1.31515 * 120.00126 * 0.02562 * 20 18 15 22 22 Si 1.86803 * 119.99745 * 180.02562 * 20 18 15 23 23 H 1.48500 * 109.47256 * 90.00491 * 22 20 18 24 24 H 1.48506 * 109.46930 * 210.00332 * 22 20 18 25 25 H 1.48499 * 109.47104 * 330.00193 * 22 20 18 26 26 C 1.38409 * 120.34480 * 0.23547 * 9 8 7 27 27 C 1.37882 * 120.17308 * 359.48113 * 26 9 8 28 28 H 1.08992 * 109.47646 * 300.00418 * 1 2 3 29 29 H 1.09008 * 109.46880 * 60.00652 * 1 2 3 30 30 H 1.09003 * 109.47469 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46994 * 239.99366 * 2 1 3 32 32 H 1.08999 * 109.46959 * 180.02562 * 3 2 1 33 33 H 1.09008 * 109.46659 * 299.99484 * 3 2 1 34 34 H 1.08999 * 109.47525 * 59.99233 * 3 2 1 35 35 H 1.08004 * 120.08665 * 0.02562 * 7 6 4 36 36 H 1.07996 * 119.91941 * 180.02562 * 8 7 6 37 37 H 1.08992 * 109.47421 * 270.00337 * 14 13 10 38 38 H 1.09007 * 109.46720 * 30.00347 * 14 13 10 39 39 H 1.09003 * 109.47218 * 150.00128 * 14 13 10 40 40 H 1.08998 * 109.47533 * 59.99637 * 17 15 13 41 41 H 1.08996 * 109.47853 * 179.97438 * 17 15 13 42 42 H 1.09002 * 109.47153 * 300.00008 * 17 15 13 43 43 H 0.96999 * 120.00073 * 179.97438 * 21 20 18 44 44 H 1.07998 * 119.90849 * 179.72106 * 26 9 8 45 45 H 1.08005 * 120.08718 * 180.23007 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 2.2343 -0.0868 2.2506 6 6 2.2775 -2.1610 1.1942 7 6 2.7441 -2.8238 2.3339 8 6 2.9720 -4.1830 2.2917 9 6 2.7407 -4.8913 1.1252 10 16 3.0356 -6.6279 1.0813 11 8 3.9767 -6.9011 2.1104 12 8 3.2555 -6.9631 -0.2819 13 7 1.6266 -7.3757 1.5255 14 6 1.3693 -7.6752 2.9363 15 6 0.6372 -7.7380 0.5076 16 1 1.0006 -7.4383 -0.4754 17 6 -0.6831 -7.0232 0.8023 18 6 0.4170 -9.2287 0.5291 19 1 0.9595 -9.8446 1.2312 20 6 -0.4778 -9.8061 -0.3466 21 7 -1.1387 -9.0561 -1.2012 22 14 -0.7512 -11.6539 -0.3194 23 1 -1.8493 -11.9779 0.6263 24 1 -1.1169 -12.1202 -1.6811 25 1 0.4952 -12.3323 0.1181 26 6 2.2841 -4.2416 -0.0084 27 6 2.0459 -2.8838 0.0195 28 1 -0.3634 0.5138 0.8898 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9562 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 2.9254 -2.2724 3.2447 36 1 3.3319 -4.6964 3.1710 37 1 1.7566 -8.6659 3.1739 38 1 1.8642 -6.9320 3.5615 39 1 0.2957 -7.6503 3.1231 40 1 -0.5239 -5.9450 0.7868 41 1 -1.4191 -7.2924 0.0448 42 1 -1.0467 -7.3226 1.7853 43 1 -1.7679 -9.4624 -1.8176 44 1 2.1103 -4.8004 -0.9161 45 1 1.6860 -2.3789 -0.8648 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360409004.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:18 Heat of formation + Delta-G solvation = -106.530465 kcal Electronic energy + Delta-G solvation = -27838.159064 eV Core-core repulsion = 23947.089890 eV Total energy + Delta-G solvation = -3891.069173 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.41576 -39.48097 -38.38603 -37.91419 -36.92452 -35.62896 -34.52460 -32.73585 -32.23020 -30.90995 -28.09372 -27.28258 -27.03246 -26.55768 -24.18288 -23.24221 -22.50418 -20.45525 -20.04979 -19.14717 -18.57400 -18.27348 -17.80081 -17.27206 -16.81175 -16.36757 -16.06860 -15.86363 -15.58423 -15.23605 -15.04341 -14.83819 -14.65961 -14.52953 -14.28342 -13.97139 -13.71671 -13.61820 -13.39473 -13.28136 -13.19219 -13.15426 -12.99117 -12.97238 -12.76940 -12.57987 -12.43383 -12.28865 -12.17282 -12.10548 -12.03476 -11.87368 -11.81037 -11.13694 -10.75173 -10.58316 -10.47809 -10.22111 -9.67273 -8.10083 -6.22799 -0.97499 -0.56151 0.15178 1.02731 1.44113 1.46652 1.55564 2.04118 2.45059 2.46891 2.73971 2.80082 3.18643 3.22848 3.58080 3.75545 3.78254 4.02970 4.05931 4.08225 4.14779 4.22011 4.43456 4.51002 4.68406 4.74826 4.79618 4.82987 4.83328 4.88764 4.91186 4.92368 4.99862 5.02577 5.04078 5.11194 5.13693 5.19023 5.27522 5.29961 5.59269 5.63213 5.72611 5.88003 6.12991 6.31156 6.31363 6.83923 7.45832 8.94076 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016676 B = 0.003219 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.615234 B = 8696.185193 C = 9601.650786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.139 4.139 3 C -0.140 4.140 4 C 0.404 3.596 5 O -0.472 6.472 6 C -0.128 4.128 7 C -0.090 4.090 8 C -0.039 4.039 9 C -0.650 4.650 10 S 2.688 3.312 11 O -0.984 6.984 12 O -0.987 6.987 13 N -0.986 5.986 14 C 0.098 3.902 15 C 0.271 3.729 16 H 0.034 0.966 17 C -0.138 4.138 18 C -0.538 4.538 19 H 0.057 0.943 20 C 0.021 3.979 21 N -0.911 5.911 22 Si 0.953 3.047 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.276 1.276 26 C -0.043 4.043 27 C -0.081 4.081 28 H 0.052 0.948 29 H 0.092 0.908 30 H 0.064 0.936 31 H 0.122 0.878 32 H 0.053 0.947 33 H 0.087 0.913 34 H 0.052 0.948 35 H 0.152 0.848 36 H 0.156 0.844 37 H 0.047 0.953 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.033 0.967 41 H 0.070 0.930 42 H 0.042 0.958 43 H 0.265 0.735 44 H 0.146 0.854 45 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.550 18.170 2.904 18.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.158 4.158 3 C -0.198 4.198 4 C 0.282 3.718 5 O -0.348 6.348 6 C -0.129 4.129 7 C -0.109 4.109 8 C -0.058 4.058 9 C -0.738 4.738 10 S 2.781 3.219 11 O -0.974 6.974 12 O -0.978 6.978 13 N -0.826 5.826 14 C -0.047 4.047 15 C 0.167 3.833 16 H 0.052 0.948 17 C -0.198 4.198 18 C -0.578 4.578 19 H 0.075 0.925 20 C -0.179 4.179 21 N -0.550 5.550 22 Si 0.779 3.221 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.201 1.201 26 C -0.062 4.062 27 C -0.100 4.100 28 H 0.071 0.929 29 H 0.111 0.889 30 H 0.083 0.917 31 H 0.140 0.860 32 H 0.073 0.927 33 H 0.106 0.894 34 H 0.071 0.929 35 H 0.170 0.830 36 H 0.174 0.826 37 H 0.066 0.934 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.052 0.948 41 H 0.089 0.911 42 H 0.061 0.939 43 H 0.074 0.926 44 H 0.164 0.836 45 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 3.305 18.072 3.093 18.631 hybrid contribution -0.496 -0.813 0.030 0.953 sum 2.809 17.259 3.123 17.763 Atomic orbital electron populations 1.21776 0.91166 1.03260 1.03774 1.21738 0.98896 0.98250 0.96891 1.21736 1.01075 0.93698 1.03256 1.23018 0.71976 0.86965 0.89827 1.90504 1.40613 1.68852 1.34808 1.21085 1.00553 0.96014 0.95264 1.21696 0.96254 0.94006 0.98966 1.21084 0.93789 0.94655 0.96248 1.31228 1.14501 1.26229 1.01834 1.01760 0.73140 0.74351 0.72608 1.93494 1.60170 1.84826 1.58894 1.93528 1.84798 1.83395 1.36038 1.57293 1.37799 1.72246 1.15287 1.21442 1.03375 1.00918 0.78984 1.18502 0.85256 0.94301 0.85214 0.94803 1.21949 0.99771 0.96654 1.01384 1.21632 1.23757 0.93123 1.19299 0.92518 1.25575 0.95466 1.02024 0.94864 1.69951 1.27214 1.36435 1.21399 0.85640 0.78370 0.80707 0.77408 1.19663 1.20906 1.20059 1.21167 0.92410 0.95933 0.96738 1.21887 0.96576 0.93064 0.98453 0.92860 0.88902 0.91730 0.85964 0.92748 0.89434 0.92855 0.83032 0.82594 0.93395 0.89956 0.90162 0.94751 0.91120 0.93899 0.92586 0.83638 0.80474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.17 71.98 0.66 -1.00 16 2 C -0.14 -1.82 2.69 -11.54 -0.03 -1.85 16 3 C -0.14 -1.74 8.79 71.98 0.63 -1.11 16 4 C 0.40 8.06 6.17 28.03 0.17 8.23 16 5 O -0.47 -12.02 16.17 -2.95 -0.05 -12.07 16 6 C -0.13 -2.79 5.87 -20.15 -0.12 -2.90 16 7 C -0.09 -2.12 9.60 22.58 0.22 -1.90 16 8 C -0.04 -1.01 9.50 22.23 0.21 -0.79 16 9 C -0.65 -19.71 5.98 22.35 0.13 -19.57 16 10 S 2.69 102.20 5.64 -56.49 -0.32 101.88 16 11 O -0.98 -38.56 16.34 -128.00 -2.09 -40.65 16 12 O -0.99 -44.52 15.82 -128.00 -2.03 -46.55 16 13 N -0.99 -39.28 3.06 -520.44 -1.59 -40.87 16 14 C 0.10 3.25 9.53 127.77 1.22 4.47 16 15 C 0.27 12.81 2.62 44.24 0.12 12.92 16 16 H 0.03 1.78 6.91 -2.39 -0.02 1.77 16 17 C -0.14 -5.95 8.95 71.98 0.64 -5.31 16 18 C -0.54 -28.38 8.37 25.60 0.21 -28.17 16 19 H 0.06 2.98 7.65 -2.91 -0.02 2.96 16 20 C 0.02 1.10 5.30 84.65 0.45 1.55 16 21 N -0.91 -49.42 11.32 21.45 0.24 -49.17 16 22 Si 0.95 42.36 29.54 68.60 2.03 44.38 16 23 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 24 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 25 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 26 C -0.04 -1.18 9.50 22.23 0.21 -0.97 16 27 C -0.08 -1.67 9.36 22.58 0.21 -1.46 16 28 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.12 1.07 6.47 -2.39 -0.02 1.05 16 32 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 34 H 0.05 0.80 7.86 -2.39 -0.02 0.78 16 35 H 0.15 3.14 7.65 -2.91 -0.02 3.12 16 36 H 0.16 3.58 7.60 -2.91 -0.02 3.56 16 37 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.08 2.17 7.79 -2.38 -0.02 2.15 16 39 H 0.08 2.55 6.43 -2.39 -0.02 2.53 16 40 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.07 3.42 6.07 -2.39 -0.01 3.40 16 42 H 0.04 1.73 6.66 -2.39 -0.02 1.72 16 43 H 0.26 13.67 8.31 -92.71 -0.77 12.90 16 44 H 0.15 4.06 7.59 -2.91 -0.02 4.04 16 45 H 0.18 2.23 6.36 -2.91 -0.02 2.21 16 Total: -1.00 -68.58 380.97 2.13 -66.45 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.99 Total: 14.46 kcal Atomic # 6 Polarization: -42.80 SS G_CDS: 4.94 Total: -37.86 kcal Atomic # 7 Polarization: -88.69 SS G_CDS: -1.35 Total: -90.04 kcal Atomic # 8 Polarization: -95.11 SS G_CDS: -4.16 Total: -99.27 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.38 kcal Atomic # 16 Polarization: 102.20 SS G_CDS: -0.32 Total: 101.88 kcal Total: -68.58 2.13 -66.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360409004.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.078 kcal (2) G-P(sol) polarization free energy of solvation -68.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds