Wall clock time and date at job start Sat Apr 11 2020 05:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46971 * 2 1 4 4 C 1.50701 * 109.47214 * 119.99818 * 2 1 3 5 5 O 1.21246 * 119.99739 * 270.00533 * 4 2 1 6 6 C 1.47166 * 119.99703 * 89.99734 * 4 2 1 7 7 C 1.39855 * 120.17569 * 0.25721 * 6 4 2 8 8 C 1.37879 * 119.82632 * 180.20803 * 7 6 4 9 9 C 1.38412 * 120.17179 * 359.51092 * 8 7 6 10 10 S 1.76194 * 119.82594 * 180.25646 * 9 8 7 11 11 O 1.42090 * 106.40434 * 203.54021 * 10 9 8 12 12 O 1.42108 * 106.40274 * 336.46361 * 10 9 8 13 13 N 1.65600 * 107.21827 * 90.00057 * 10 9 8 14 14 C 1.46500 * 120.00268 * 270.00113 * 13 10 9 15 15 C 1.46502 * 119.99773 * 89.99908 * 13 10 9 16 16 H 1.08990 * 109.47470 * 0.02562 * 15 13 10 17 17 C 1.53003 * 109.46889 * 120.00415 * 15 13 10 18 18 C 1.50699 * 109.46875 * 239.99797 * 15 13 10 19 19 H 1.07995 * 120.00383 * 0.02562 * 18 15 13 20 20 C 1.37885 * 119.99754 * 180.02562 * 18 15 13 21 21 N 1.31512 * 119.99882 * 359.97438 * 20 18 15 22 22 Si 1.86796 * 120.00071 * 180.02562 * 20 18 15 23 23 H 1.48505 * 109.47050 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47224 * 119.99794 * 22 20 18 25 25 H 1.48504 * 109.47284 * 240.00046 * 22 20 18 26 26 C 1.38404 * 120.34669 * 0.27984 * 9 8 7 27 27 C 1.37883 * 120.17343 * 359.95571 * 26 9 8 28 28 H 1.08998 * 109.46913 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47218 * 300.00098 * 1 2 3 30 30 H 1.09001 * 109.46993 * 59.99951 * 1 2 3 31 31 H 1.09003 * 109.46960 * 239.99892 * 2 1 3 32 32 H 1.08998 * 109.47192 * 180.02562 * 3 2 1 33 33 H 1.09006 * 109.46650 * 300.00107 * 3 2 1 34 34 H 1.08999 * 109.46883 * 59.99584 * 3 2 1 35 35 H 1.07998 * 120.08487 * 359.97175 * 7 6 4 36 36 H 1.08002 * 119.91724 * 179.79502 * 8 7 6 37 37 H 1.09004 * 109.47249 * 89.99868 * 14 13 10 38 38 H 1.08999 * 109.47155 * 210.00061 * 14 13 10 39 39 H 1.08997 * 109.47048 * 329.99690 * 14 13 10 40 40 H 1.09001 * 109.47747 * 59.99835 * 17 15 13 41 41 H 1.09003 * 109.47071 * 180.02562 * 17 15 13 42 42 H 1.09002 * 109.47247 * 299.99763 * 17 15 13 43 43 H 0.97005 * 119.99653 * 179.97438 * 21 20 18 44 44 H 1.07995 * 119.91310 * 179.97438 * 26 9 8 45 45 H 1.08002 * 120.08942 * 180.02562 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.2344 -0.0867 2.2505 6 6 2.2776 -2.1610 1.1940 7 6 2.0508 -2.8830 0.0179 8 6 2.2788 -4.2425 -0.0070 9 6 2.7407 -4.8913 1.1251 10 16 3.0354 -6.6278 1.0812 11 8 2.9501 -7.0834 2.4244 12 8 2.2285 -7.1454 0.0321 13 7 4.6085 -6.8463 0.6123 14 6 4.9382 -6.9744 -0.8094 15 6 5.6706 -6.9115 1.6193 16 1 5.2370 -6.7980 2.6127 17 6 6.3807 -8.2635 1.5247 18 6 6.6635 -5.8045 1.3745 19 1 6.5177 -5.1206 0.5515 20 6 7.7580 -5.6649 2.2013 21 7 7.9353 -6.4974 3.2038 22 14 8.9883 -4.2923 1.8984 23 1 8.5637 -3.4988 0.7172 24 1 9.0499 -3.4105 3.0916 25 1 10.3298 -4.8769 1.6451 26 6 2.9717 -4.1831 2.2916 27 6 2.7438 -2.8239 2.3338 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6943 -2.3775 -0.8674 36 1 2.1010 -4.8020 -0.9135 37 1 5.1425 -5.9878 -1.2253 38 1 5.8193 -7.6060 -0.9226 39 1 4.0981 -7.4247 -1.3380 40 1 6.8145 -8.3775 0.5313 41 1 7.1707 -8.3122 2.2743 42 1 5.6626 -9.0642 1.7017 43 1 8.7055 -6.3994 3.7853 44 1 3.3316 -4.6964 3.1710 45 1 2.9250 -2.2725 3.2447 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360409005.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:23 Heat of formation + Delta-G solvation = -88.618979 kcal Electronic energy + Delta-G solvation = -28034.059354 eV Core-core repulsion = 24143.766881 eV Total energy + Delta-G solvation = -3890.292473 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.38073 -38.35062 -36.83461 -36.24757 -35.38257 -34.87564 -32.66556 -31.58986 -31.07386 -29.13788 -27.50830 -25.74240 -25.46228 -25.19191 -23.12257 -22.15676 -20.80368 -19.50015 -18.72362 -17.73517 -17.06587 -16.67131 -16.43689 -16.00987 -15.38249 -15.19188 -14.80629 -14.72889 -14.33317 -14.14348 -13.65068 -13.49884 -13.45067 -13.07876 -12.94687 -12.88919 -12.69187 -12.58623 -12.35996 -12.02175 -11.87977 -11.65323 -11.48592 -11.42879 -11.39918 -11.21534 -11.12007 -11.06135 -10.88005 -10.72675 -10.48201 -10.30757 -10.08860 -9.79041 -9.41807 -9.24360 -9.05359 -8.53517 -8.03923 -6.14563 -4.23078 0.22040 0.92841 1.31629 2.10048 3.20999 3.30059 3.31768 3.40955 3.64918 3.71695 4.21208 4.32087 4.44933 4.49776 4.69406 4.72985 4.82992 4.95595 5.16384 5.18205 5.27942 5.29338 5.38851 5.46653 5.48896 5.58808 5.61513 5.63352 5.80824 5.89073 5.92646 6.01159 6.10994 6.14164 6.21857 6.26571 6.56469 6.75574 6.77879 6.82403 7.03117 7.28007 7.37296 7.56936 7.71839 7.98124 8.19452 8.80613 9.44077 10.90426 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010801 B = 0.004265 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.708650 B = 6563.318691 C = 8213.940148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.141 4.141 3 C -0.141 4.141 4 C 0.400 3.600 5 O -0.444 6.444 6 C -0.128 4.128 7 C -0.101 4.101 8 C -0.037 4.037 9 C -0.638 4.638 10 S 2.682 3.318 11 O -0.955 6.955 12 O -0.974 6.974 13 N -0.977 5.977 14 C 0.096 3.904 15 C 0.265 3.735 16 H 0.061 0.939 17 C -0.145 4.145 18 C -0.527 4.527 19 H 0.063 0.937 20 C 0.066 3.934 21 N -0.886 5.886 22 Si 0.893 3.107 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.283 1.283 26 C -0.017 4.017 27 C -0.083 4.083 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.137 0.863 36 H 0.143 0.857 37 H 0.045 0.955 38 H 0.080 0.920 39 H 0.064 0.936 40 H 0.034 0.966 41 H 0.095 0.905 42 H 0.015 0.985 43 H 0.264 0.736 44 H 0.149 0.851 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.722 8.807 -8.514 16.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.160 4.160 3 C -0.199 4.199 4 C 0.276 3.724 5 O -0.317 6.317 6 C -0.129 4.129 7 C -0.120 4.120 8 C -0.056 4.056 9 C -0.722 4.722 10 S 2.771 3.229 11 O -0.945 6.945 12 O -0.964 6.964 13 N -0.818 5.818 14 C -0.050 4.050 15 C 0.163 3.837 16 H 0.079 0.921 17 C -0.205 4.205 18 C -0.567 4.567 19 H 0.081 0.919 20 C -0.137 4.137 21 N -0.524 5.524 22 Si 0.721 3.279 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.209 1.209 26 C -0.036 4.036 27 C -0.102 4.102 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.117 0.883 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.155 0.845 36 H 0.161 0.839 37 H 0.063 0.937 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.053 0.947 41 H 0.113 0.887 42 H 0.034 0.966 43 H 0.074 0.926 44 H 0.167 0.833 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -12.093 8.487 -7.620 16.624 hybrid contribution 1.122 1.507 -0.277 1.899 sum -10.972 9.994 -7.897 16.811 Atomic orbital electron populations 1.21730 0.92194 1.02877 1.03048 1.21635 0.98184 0.98144 0.98020 1.21722 1.01475 0.93991 1.02681 1.22596 0.73076 0.87634 0.89074 1.90511 1.39176 1.68495 1.33565 1.20747 1.01704 0.95059 0.95378 1.21474 0.99146 0.94224 0.97163 1.20863 0.93408 0.94490 0.96818 1.31661 1.11259 1.29052 1.00236 1.02234 0.73208 0.73893 0.73538 1.93569 1.86131 1.78846 1.35979 1.93508 1.67905 1.77434 1.57529 1.57390 1.24408 1.85803 1.14165 1.21340 1.01969 1.01385 0.80304 1.18828 0.84257 0.94694 0.85958 0.92110 1.22074 1.00971 0.95755 1.01719 1.21413 1.07674 1.13358 1.14229 0.91879 1.24897 0.97703 0.96162 0.94896 1.69879 1.29396 1.36432 1.16671 0.86518 0.81139 0.81988 0.78234 1.19843 1.20911 1.20871 1.21005 0.91850 0.93917 0.96819 1.21533 0.96012 0.94453 0.98158 0.91776 0.91961 0.91124 0.88280 0.92275 0.91707 0.91571 0.84483 0.83891 0.93672 0.90171 0.91720 0.94683 0.88689 0.96633 0.92617 0.83291 0.84199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.18 37.16 0.34 -0.69 16 2 C -0.14 -1.25 2.70 -91.77 -0.25 -1.49 16 3 C -0.14 -1.21 8.79 37.16 0.33 -0.88 16 4 C 0.40 5.01 6.17 -30.69 -0.19 4.82 16 5 O -0.44 -6.76 16.17 5.59 0.09 -6.67 16 6 C -0.13 -1.74 5.87 -105.06 -0.62 -2.36 16 7 C -0.10 -1.22 9.37 -39.11 -0.37 -1.58 16 8 C -0.04 -0.51 9.50 -39.65 -0.38 -0.89 16 9 C -0.64 -10.66 5.98 -39.46 -0.24 -10.90 16 10 S 2.68 50.36 5.68 -107.50 -0.61 49.75 16 11 O -0.95 -20.56 15.83 -57.17 -0.90 -21.47 16 12 O -0.97 -18.34 15.87 -57.17 -0.91 -19.25 16 13 N -0.98 -19.32 3.06 -115.85 -0.35 -19.68 16 14 C 0.10 1.60 9.90 59.85 0.59 2.19 16 15 C 0.27 6.22 2.62 -69.08 -0.18 6.04 16 16 H 0.06 1.56 6.91 -51.93 -0.36 1.20 16 17 C -0.15 -3.32 8.95 37.16 0.33 -2.99 16 18 C -0.53 -13.21 8.37 -34.44 -0.29 -13.50 16 19 H 0.06 1.56 7.65 -52.49 -0.40 1.16 16 20 C 0.07 1.71 5.30 -17.82 -0.09 1.62 16 21 N -0.89 -23.78 11.32 55.43 0.63 -23.15 16 22 Si 0.89 20.31 29.54 -169.99 -5.02 15.29 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 C -0.02 -0.28 9.50 -39.65 -0.38 -0.66 16 27 C -0.08 -1.27 9.60 -39.11 -0.38 -1.65 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.10 0.71 6.46 -51.93 -0.34 0.38 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.62 7.85 -51.93 -0.41 0.21 16 35 H 0.14 1.12 6.35 -52.49 -0.33 0.79 16 36 H 0.14 1.70 7.60 -52.49 -0.40 1.30 16 37 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.08 1.33 6.43 -51.93 -0.33 0.99 16 39 H 0.06 0.95 7.02 -51.93 -0.36 0.58 16 40 H 0.03 0.74 6.66 -51.93 -0.35 0.39 16 41 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 42 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 44 H 0.15 2.53 7.60 -52.49 -0.40 2.13 16 45 H 0.14 2.02 7.65 -52.49 -0.40 1.62 16 LS Contribution 380.14 15.07 5.73 5.73 Total: -1.00 -31.03 380.14 -9.60 -40.63 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -6.49 Total: 1.74 kcal Atomic # 6 Polarization: -21.16 SS G_CDS: -1.76 Total: -22.92 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: 0.27 Total: -42.83 kcal Atomic # 8 Polarization: -45.66 SS G_CDS: -1.72 Total: -47.38 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 16 Polarization: 50.36 SS G_CDS: -0.61 Total: 49.75 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.03 -9.60 -40.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360409005.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.987 kcal (2) G-P(sol) polarization free energy of solvation -31.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds