Wall clock time and date at job start Sat Apr 11 2020 05:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46971 * 2 1 4 4 C 1.50701 * 109.47214 * 119.99818 * 2 1 3 5 5 O 1.21246 * 119.99739 * 270.00533 * 4 2 1 6 6 C 1.47166 * 119.99703 * 89.99734 * 4 2 1 7 7 C 1.39855 * 120.17569 * 0.25721 * 6 4 2 8 8 C 1.37879 * 119.82632 * 180.20803 * 7 6 4 9 9 C 1.38412 * 120.17179 * 359.51092 * 8 7 6 10 10 S 1.76194 * 119.82594 * 180.25646 * 9 8 7 11 11 O 1.42090 * 106.40434 * 203.54021 * 10 9 8 12 12 O 1.42108 * 106.40274 * 336.46361 * 10 9 8 13 13 N 1.65600 * 107.21827 * 90.00057 * 10 9 8 14 14 C 1.46500 * 120.00268 * 270.00113 * 13 10 9 15 15 C 1.46502 * 119.99773 * 89.99908 * 13 10 9 16 16 H 1.08990 * 109.47470 * 0.02562 * 15 13 10 17 17 C 1.53003 * 109.46889 * 120.00415 * 15 13 10 18 18 C 1.50699 * 109.46875 * 239.99797 * 15 13 10 19 19 H 1.07995 * 120.00383 * 0.02562 * 18 15 13 20 20 C 1.37885 * 119.99754 * 180.02562 * 18 15 13 21 21 N 1.31512 * 119.99882 * 359.97438 * 20 18 15 22 22 Si 1.86796 * 120.00071 * 180.02562 * 20 18 15 23 23 H 1.48505 * 109.47050 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47224 * 119.99794 * 22 20 18 25 25 H 1.48504 * 109.47284 * 240.00046 * 22 20 18 26 26 C 1.38404 * 120.34669 * 0.27984 * 9 8 7 27 27 C 1.37883 * 120.17343 * 359.95571 * 26 9 8 28 28 H 1.08998 * 109.46913 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47218 * 300.00098 * 1 2 3 30 30 H 1.09001 * 109.46993 * 59.99951 * 1 2 3 31 31 H 1.09003 * 109.46960 * 239.99892 * 2 1 3 32 32 H 1.08998 * 109.47192 * 180.02562 * 3 2 1 33 33 H 1.09006 * 109.46650 * 300.00107 * 3 2 1 34 34 H 1.08999 * 109.46883 * 59.99584 * 3 2 1 35 35 H 1.07998 * 120.08487 * 359.97175 * 7 6 4 36 36 H 1.08002 * 119.91724 * 179.79502 * 8 7 6 37 37 H 1.09004 * 109.47249 * 89.99868 * 14 13 10 38 38 H 1.08999 * 109.47155 * 210.00061 * 14 13 10 39 39 H 1.08997 * 109.47048 * 329.99690 * 14 13 10 40 40 H 1.09001 * 109.47747 * 59.99835 * 17 15 13 41 41 H 1.09003 * 109.47071 * 180.02562 * 17 15 13 42 42 H 1.09002 * 109.47247 * 299.99763 * 17 15 13 43 43 H 0.97005 * 119.99653 * 179.97438 * 21 20 18 44 44 H 1.07995 * 119.91310 * 179.97438 * 26 9 8 45 45 H 1.08002 * 120.08942 * 180.02562 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.2344 -0.0867 2.2505 6 6 2.2776 -2.1610 1.1940 7 6 2.0508 -2.8830 0.0179 8 6 2.2788 -4.2425 -0.0070 9 6 2.7407 -4.8913 1.1251 10 16 3.0354 -6.6278 1.0812 11 8 2.9501 -7.0834 2.4244 12 8 2.2285 -7.1454 0.0321 13 7 4.6085 -6.8463 0.6123 14 6 4.9382 -6.9744 -0.8094 15 6 5.6706 -6.9115 1.6193 16 1 5.2370 -6.7980 2.6127 17 6 6.3807 -8.2635 1.5247 18 6 6.6635 -5.8045 1.3745 19 1 6.5177 -5.1206 0.5515 20 6 7.7580 -5.6649 2.2013 21 7 7.9353 -6.4974 3.2038 22 14 8.9883 -4.2923 1.8984 23 1 8.5637 -3.4988 0.7172 24 1 9.0499 -3.4105 3.0916 25 1 10.3298 -4.8769 1.6451 26 6 2.9717 -4.1831 2.2916 27 6 2.7438 -2.8239 2.3338 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6943 -2.3775 -0.8674 36 1 2.1010 -4.8020 -0.9135 37 1 5.1425 -5.9878 -1.2253 38 1 5.8193 -7.6060 -0.9226 39 1 4.0981 -7.4247 -1.3380 40 1 6.8145 -8.3775 0.5313 41 1 7.1707 -8.3122 2.2743 42 1 5.6626 -9.0642 1.7017 43 1 8.7055 -6.3994 3.7853 44 1 3.3316 -4.6964 3.1710 45 1 2.9250 -2.2725 3.2447 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360409005.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:21 Heat of formation + Delta-G solvation = -107.250350 kcal Electronic energy + Delta-G solvation = -28034.867271 eV Core-core repulsion = 24143.766881 eV Total energy + Delta-G solvation = -3891.100390 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.40739 -39.46189 -38.39387 -37.91904 -36.94606 -35.63293 -34.53139 -32.71493 -32.20797 -30.91700 -28.09310 -27.32276 -26.98653 -26.53807 -24.19828 -23.16570 -22.57355 -20.46613 -20.06153 -19.05400 -18.53951 -18.32781 -17.85073 -17.27529 -16.83693 -16.36838 -16.09205 -15.85278 -15.56980 -15.23206 -15.05480 -14.88611 -14.63597 -14.53767 -14.22541 -13.99335 -13.67771 -13.59945 -13.45362 -13.27548 -13.22657 -13.18248 -12.97032 -12.94969 -12.76816 -12.61737 -12.41217 -12.24781 -12.16486 -12.11227 -12.06955 -11.86857 -11.85598 -11.14297 -10.74750 -10.54753 -10.51347 -10.19109 -9.65652 -8.11139 -6.25115 -0.94497 -0.52424 0.18106 1.04679 1.40386 1.44223 1.52722 2.01869 2.41601 2.47412 2.74004 2.78322 3.17804 3.24063 3.59004 3.77158 3.78774 4.04333 4.06191 4.14252 4.18444 4.23000 4.45410 4.52311 4.75117 4.76253 4.78625 4.83950 4.84286 4.88875 4.92673 4.94667 4.98764 5.03669 5.04991 5.12897 5.17072 5.20030 5.27630 5.30390 5.61496 5.63038 5.72114 5.85192 6.08685 6.28285 6.32687 6.84285 7.44677 8.93406 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010801 B = 0.004265 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.708650 B = 6563.318691 C = 8213.940148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.135 4.135 3 C -0.142 4.142 4 C 0.400 3.600 5 O -0.479 6.479 6 C -0.131 4.131 7 C -0.080 4.080 8 C -0.037 4.037 9 C -0.650 4.650 10 S 2.693 3.307 11 O -0.994 6.994 12 O -0.973 6.973 13 N -0.985 5.985 14 C 0.088 3.912 15 C 0.270 3.730 16 H 0.028 0.972 17 C -0.140 4.140 18 C -0.528 4.528 19 H 0.066 0.934 20 C 0.020 3.980 21 N -0.915 5.915 22 Si 0.950 3.050 23 H -0.266 1.266 24 H -0.288 1.288 25 H -0.279 1.279 26 C -0.040 4.040 27 C -0.099 4.099 28 H 0.069 0.931 29 H 0.048 0.952 30 H 0.096 0.904 31 H 0.128 0.872 32 H 0.048 0.952 33 H 0.091 0.909 34 H 0.050 0.950 35 H 0.189 0.811 36 H 0.171 0.829 37 H 0.060 0.940 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.048 0.952 41 H 0.070 0.930 42 H 0.023 0.977 43 H 0.263 0.737 44 H 0.130 0.870 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.817 10.643 -12.149 20.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.154 4.154 3 C -0.200 4.200 4 C 0.279 3.721 5 O -0.355 6.355 6 C -0.132 4.132 7 C -0.098 4.098 8 C -0.056 4.056 9 C -0.737 4.737 10 S 2.786 3.214 11 O -0.984 6.984 12 O -0.964 6.964 13 N -0.825 5.825 14 C -0.057 4.057 15 C 0.166 3.834 16 H 0.046 0.954 17 C -0.200 4.200 18 C -0.568 4.568 19 H 0.085 0.915 20 C -0.180 4.180 21 N -0.554 5.554 22 Si 0.776 3.224 23 H -0.190 1.190 24 H -0.215 1.215 25 H -0.205 1.205 26 C -0.060 4.060 27 C -0.118 4.118 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.115 0.885 31 H 0.146 0.854 32 H 0.067 0.933 33 H 0.110 0.890 34 H 0.069 0.931 35 H 0.206 0.794 36 H 0.188 0.812 37 H 0.078 0.922 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.067 0.933 41 H 0.089 0.911 42 H 0.042 0.958 43 H 0.073 0.927 44 H 0.147 0.853 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -13.189 10.278 -11.286 20.173 hybrid contribution 1.366 0.997 0.832 1.885 sum -11.823 11.275 -10.454 19.396 Atomic orbital electron populations 1.21777 0.90681 1.03524 1.03773 1.21741 0.99212 0.97916 0.96540 1.21753 1.00894 0.94020 1.03296 1.23188 0.71936 0.86998 0.90025 1.90509 1.40768 1.68934 1.35288 1.21107 1.00661 0.96124 0.95290 1.21977 0.96617 0.93310 0.97935 1.21300 0.92202 0.95594 0.96506 1.31261 1.13554 1.27372 1.01548 1.01608 0.72700 0.74547 0.72548 1.93518 1.86488 1.80342 1.38070 1.93494 1.67547 1.78165 1.57144 1.57261 1.23757 1.86594 1.14869 1.21586 1.02942 1.02541 0.78602 1.18472 0.84700 0.94596 0.85612 0.95392 1.21959 1.00455 0.95895 1.01688 1.21651 1.07673 1.13530 1.13901 0.91544 1.25594 0.99454 0.98054 0.94862 1.70005 1.29963 1.37928 1.17554 0.85633 0.79257 0.79547 0.77955 1.18986 1.21479 1.20469 1.20910 0.93577 0.94752 0.96733 1.21591 0.96971 0.93909 0.99315 0.91188 0.93235 0.88502 0.85446 0.93255 0.88971 0.93105 0.79387 0.81165 0.92185 0.90310 0.89485 0.93272 0.91115 0.95790 0.92734 0.85255 0.84581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.18 71.98 0.66 -0.82 16 2 C -0.14 -1.87 2.70 -11.54 -0.03 -1.90 16 3 C -0.14 -2.02 8.79 71.98 0.63 -1.38 16 4 C 0.40 9.24 6.17 28.03 0.17 9.42 16 5 O -0.48 -14.47 16.17 -2.93 -0.05 -14.52 16 6 C -0.13 -3.30 5.87 -20.15 -0.12 -3.42 16 7 C -0.08 -1.59 9.37 22.58 0.21 -1.38 16 8 C -0.04 -0.91 9.50 22.23 0.21 -0.70 16 9 C -0.65 -21.38 5.98 22.35 0.13 -21.24 16 10 S 2.69 101.31 5.68 -56.49 -0.32 100.98 16 11 O -0.99 -44.80 15.83 -128.00 -2.03 -46.82 16 12 O -0.97 -35.20 15.87 -128.00 -2.03 -37.23 16 13 N -0.99 -38.69 3.06 -520.45 -1.59 -40.28 16 14 C 0.09 2.76 9.90 127.77 1.27 4.03 16 15 C 0.27 12.95 2.62 44.25 0.12 13.07 16 16 H 0.03 1.53 6.91 -2.39 -0.02 1.51 16 17 C -0.14 -6.51 8.95 71.98 0.64 -5.87 16 18 C -0.53 -26.60 8.37 25.60 0.21 -26.39 16 19 H 0.07 3.24 7.65 -2.91 -0.02 3.21 16 20 C 0.02 1.06 5.30 84.66 0.45 1.51 16 21 N -0.92 -50.46 11.32 21.45 0.24 -50.22 16 22 Si 0.95 41.70 29.54 68.60 2.03 43.73 16 23 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 24 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 25 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 26 C -0.04 -1.41 9.50 22.23 0.21 -1.20 16 27 C -0.10 -3.09 9.60 22.58 0.22 -2.87 16 28 H 0.07 0.67 8.14 -2.39 -0.02 0.66 16 29 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.13 1.06 6.46 -2.39 -0.02 1.05 16 32 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.05 0.87 7.85 -2.39 -0.02 0.85 16 35 H 0.19 1.79 6.35 -2.91 -0.02 1.77 16 36 H 0.17 3.27 7.60 -2.91 -0.02 3.24 16 37 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 38 H 0.08 2.48 6.43 -2.39 -0.02 2.46 16 39 H 0.09 2.32 7.02 -2.39 -0.02 2.31 16 40 H 0.05 2.08 6.66 -2.39 -0.02 2.06 16 41 H 0.07 3.64 6.07 -2.39 -0.01 3.63 16 42 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.26 13.87 8.31 -92.70 -0.77 13.10 16 44 H 0.13 4.86 7.60 -2.91 -0.02 4.84 16 45 H 0.14 4.19 7.65 -2.91 -0.02 4.17 16 Total: -1.00 -69.42 380.14 2.23 -67.19 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.99 Total: 16.34 kcal Atomic # 6 Polarization: -44.15 SS G_CDS: 4.99 Total: -39.16 kcal Atomic # 7 Polarization: -89.15 SS G_CDS: -1.35 Total: -90.50 kcal Atomic # 8 Polarization: -94.47 SS G_CDS: -4.10 Total: -98.58 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Atomic # 16 Polarization: 101.31 SS G_CDS: -0.32 Total: 100.98 kcal Total: -69.42 2.23 -67.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360409005.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.062 kcal (2) G-P(sol) polarization free energy of solvation -69.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds