Wall clock time and date at job start Sat Apr 11 2020 05:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99779 * 2 1 4 4 C 1.38775 * 120.17738 * 359.97167 * 3 2 1 5 5 C 1.37749 * 119.46015 * 179.09401 * 4 3 2 6 6 C 1.39111 * 120.82037 * 359.86386 * 5 4 3 7 7 C 1.37460 * 119.96798 * 1.90745 * 6 5 4 8 8 C 1.38228 * 120.17544 * 180.02562 * 3 2 1 9 9 C 1.50753 * 124.65500 * 177.14240 * 7 6 5 10 10 C 1.52724 * 112.31584 * 30.56059 * 9 7 6 11 11 N 1.47228 * 107.75559 * 274.75480 * 10 9 7 12 12 S 1.65605 * 120.87628 * 238.24186 * 11 10 9 13 13 O 1.42093 * 104.27792 * 26.04616 * 12 11 10 14 14 O 1.42102 * 104.27632 * 153.90812 * 12 11 10 15 15 C 1.81408 * 104.44712 * 269.97694 * 12 11 10 16 16 C 1.52999 * 109.46730 * 180.02562 * 15 12 11 17 17 C 1.50700 * 109.46968 * 180.02562 * 16 15 12 18 18 H 1.07998 * 120.00197 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00208 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99869 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00150 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47216 * 59.99821 * 21 19 17 23 23 H 1.48495 * 109.47023 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46746 * 299.99886 * 21 19 17 25 25 C 1.46294 * 118.24387 * 58.22163 * 11 10 9 26 26 C 1.50251 * 117.00782 * 184.21645 * 6 5 4 27 27 H 1.09005 * 109.47066 * 60.00282 * 1 2 3 28 28 H 1.08999 * 109.46920 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47325 * 300.00502 * 1 2 3 30 30 H 1.07998 * 120.26687 * 359.06897 * 4 3 2 31 31 H 1.08002 * 119.58647 * 179.85080 * 5 4 3 32 32 H 1.07997 * 119.55485 * 0.24304 * 8 3 2 33 33 H 1.09005 * 108.91831 * 269.83065 * 9 7 6 34 34 H 1.08999 * 108.91258 * 151.29013 * 9 7 6 35 35 H 1.08995 * 109.80656 * 155.18639 * 10 9 7 36 36 H 1.09001 * 109.85015 * 34.34497 * 10 9 7 37 37 H 1.08993 * 109.47250 * 299.99925 * 15 12 11 38 38 H 1.08998 * 109.47090 * 60.00388 * 15 12 11 39 39 H 1.09001 * 109.47351 * 299.99942 * 16 15 12 40 40 H 1.09000 * 109.47601 * 59.99946 * 16 15 12 41 41 H 0.96994 * 120.00041 * 179.97438 * 20 19 17 42 42 H 1.09002 * 110.03104 * 151.14999 * 25 11 10 43 43 H 1.09000 * 110.02988 * 272.52091 * 25 11 10 44 44 H 1.09004 * 108.98893 * 108.13213 * 26 6 5 45 45 H 1.09002 * 109.14146 * 349.15217 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2937 2.3770 -0.0006 5 6 1.9342 3.5964 0.0184 6 6 3.3231 3.6717 0.0409 7 6 4.0738 2.5207 0.0048 8 6 3.4261 1.2875 -0.0005 9 6 5.5802 2.4808 -0.0375 10 6 6.2123 3.6720 0.6794 11 7 6.2780 4.7888 -0.2777 12 16 7.7256 5.4964 -0.6599 13 8 8.6866 4.4757 -0.4282 14 8 7.5223 6.0295 -1.9614 15 6 7.9107 6.8322 0.5534 16 6 9.2267 7.5710 0.3016 17 6 9.3809 8.6803 1.3099 18 1 8.6165 8.8425 2.0554 19 6 10.4973 9.4889 1.2801 20 7 11.4279 9.2917 0.3719 21 14 10.6879 10.8645 2.5294 22 1 10.6967 10.2913 3.8993 23 1 11.9646 11.5822 2.2844 24 1 9.5537 11.8138 2.3973 25 6 5.0307 5.2565 -0.8824 26 6 3.9304 5.0409 0.1589 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 0.2149 2.3289 -0.0162 31 1 1.3508 4.5053 0.0155 32 1 4.0101 0.3790 -0.0049 33 1 5.9046 2.4820 -1.0782 34 1 5.9226 1.5609 0.4363 35 1 7.2168 3.4117 1.0128 36 1 5.6008 3.9553 1.5361 37 1 7.0787 7.5295 0.4559 38 1 7.9164 6.4116 1.5589 39 1 10.0591 6.8739 0.3988 40 1 9.2207 7.9917 -0.7039 41 1 12.2130 9.8608 0.3507 42 1 5.1094 6.3155 -1.1287 43 1 4.8123 4.6798 -1.7812 44 1 4.3555 5.1556 1.1560 45 1 3.1521 5.7906 0.0159 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000364845635.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:35 Heat of formation + Delta-G solvation = -86.962874 kcal Electronic energy + Delta-G solvation = -27276.066265 eV Core-core repulsion = 23385.845606 eV Total energy + Delta-G solvation = -3890.220659 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.68690 -38.97614 -36.63921 -36.51867 -35.39832 -33.88156 -33.29142 -31.77715 -31.14807 -30.15542 -27.73700 -26.90534 -25.56933 -24.84124 -22.69693 -21.83353 -21.13062 -20.60080 -18.58579 -17.92582 -17.57551 -16.70922 -16.60209 -16.29232 -16.03507 -15.88918 -15.29364 -14.92779 -14.65659 -14.52742 -14.07778 -13.79094 -13.42437 -13.33695 -13.20428 -12.92715 -12.73239 -12.62320 -12.51649 -12.38058 -12.02287 -11.75961 -11.71693 -11.55223 -11.48863 -11.15605 -11.06613 -11.02613 -10.95663 -10.84423 -10.80003 -10.41926 -10.36903 -9.75458 -9.33395 -8.98697 -8.75991 -8.49887 -8.27492 -6.12034 -4.17692 0.76204 1.07743 1.19452 2.95543 3.02938 3.27127 3.32034 3.33756 3.46942 4.30481 4.38375 4.42966 4.47692 4.56468 4.63439 4.70609 4.75713 4.76803 4.91241 4.96454 5.06355 5.08580 5.15636 5.22170 5.22942 5.32894 5.42198 5.53429 5.60576 5.66171 5.70342 5.74209 5.77630 5.90088 6.02998 6.10870 6.16258 6.23719 6.40624 6.50174 6.54197 6.69599 7.11842 7.30506 7.36681 7.80647 8.17994 8.85469 9.46904 10.98904 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.026520 B = 0.002350 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.559248 B =11913.312491 C =12343.196025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.122 3.878 4 C -0.210 4.210 5 C -0.077 4.077 6 C -0.109 4.109 7 C -0.028 4.028 8 C -0.157 4.157 9 C -0.095 4.095 10 C 0.119 3.881 11 N -1.010 6.010 12 S 2.590 3.410 13 O -0.964 6.964 14 O -0.963 6.963 15 C -0.589 4.589 16 C 0.028 3.972 17 C -0.520 4.520 18 H 0.061 0.939 19 C 0.057 3.943 20 N -0.890 5.890 21 Si 0.900 3.100 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.276 1.276 25 C 0.132 3.868 26 C -0.093 4.093 27 H 0.054 0.946 28 H 0.098 0.902 29 H 0.054 0.946 30 H 0.126 0.874 31 H 0.124 0.876 32 H 0.128 0.872 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.075 0.925 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.033 0.967 40 H 0.033 0.967 41 H 0.266 0.734 42 H 0.086 0.914 43 H 0.067 0.933 44 H 0.089 0.911 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.785 -15.592 0.701 27.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.077 3.923 4 C -0.228 4.228 5 C -0.095 4.095 6 C -0.109 4.109 7 C -0.028 4.028 8 C -0.175 4.175 9 C -0.133 4.133 10 C -0.006 4.006 11 N -0.848 5.848 12 S 2.689 3.311 13 O -0.954 6.954 14 O -0.954 6.954 15 C -0.723 4.723 16 C -0.011 4.011 17 C -0.560 4.560 18 H 0.079 0.921 19 C -0.145 4.145 20 N -0.528 5.528 21 Si 0.728 3.272 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.201 1.201 25 C 0.007 3.993 26 C -0.132 4.132 27 H 0.073 0.927 28 H 0.117 0.883 29 H 0.073 0.927 30 H 0.144 0.856 31 H 0.142 0.858 32 H 0.146 0.854 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.119 0.881 36 H 0.093 0.907 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.075 0.925 42 H 0.104 0.896 43 H 0.086 0.914 44 H 0.107 0.893 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -21.977 -16.032 -0.104 27.203 hybrid contribution -0.567 1.186 1.164 1.756 sum -22.544 -14.846 1.060 27.014 Atomic orbital electron populations 1.23031 0.78503 1.03828 1.01294 1.86064 1.21279 1.27092 1.88927 1.18861 0.92352 0.84076 0.96988 1.21146 0.99845 0.92449 1.09410 1.21054 0.93723 0.97151 0.97621 1.19393 0.93048 0.94672 1.03768 1.19532 0.95413 0.91330 0.96527 1.20564 0.91344 0.98283 1.07353 1.20887 0.90042 0.99504 1.02887 1.21451 1.02632 0.84996 0.91489 1.58199 1.23246 1.46099 1.57222 1.05726 0.72430 0.76273 0.76642 1.93527 1.59285 1.55716 1.86898 1.93540 1.84443 1.81145 1.36258 1.30492 1.10279 1.16011 1.15494 1.18955 0.87301 0.95803 0.99035 1.20963 1.05663 1.14372 1.14985 0.92123 1.25074 0.95712 0.97781 0.95962 1.69942 1.09635 1.39242 1.34005 0.86526 0.77494 0.81768 0.81451 1.20087 1.21088 1.20103 1.21248 0.82642 0.99996 0.95444 1.20839 0.98207 0.93294 1.00821 0.92720 0.88339 0.92719 0.85624 0.85757 0.85360 0.89401 0.89642 0.88060 0.90664 0.86330 0.86290 0.94888 0.94905 0.92476 0.89599 0.91437 0.89312 0.90178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.82 101.05 0.99 1.15 16 2 O -0.32 -3.07 10.50 -19.42 -0.20 -3.27 16 3 C 0.12 1.24 6.67 -39.39 -0.26 0.98 16 4 C -0.21 -1.85 9.04 -39.56 -0.36 -2.21 16 5 C -0.08 -0.68 9.53 -39.44 -0.38 -1.06 16 6 C -0.11 -1.07 5.26 -104.80 -0.55 -1.62 16 7 C -0.03 -0.29 5.58 -104.49 -0.58 -0.87 16 8 C -0.16 -1.63 9.42 -39.19 -0.37 -2.00 16 9 C -0.09 -0.98 5.27 -28.00 -0.15 -1.13 16 10 C 0.12 1.33 5.76 -3.79 -0.02 1.31 16 11 N -1.01 -13.25 3.07 -114.13 -0.35 -13.60 16 12 S 2.59 45.76 5.42 -107.50 -0.58 45.17 16 13 O -0.96 -19.46 16.66 -57.54 -0.96 -20.41 16 14 O -0.96 -19.77 17.16 -57.54 -0.99 -20.76 16 15 C -0.59 -11.07 6.12 37.16 0.23 -10.84 16 16 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 17 C -0.52 -14.31 9.11 -34.44 -0.31 -14.62 16 18 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 21 Si 0.90 21.14 29.54 -169.99 -5.02 16.11 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 25 C 0.13 1.50 5.67 -4.14 -0.02 1.48 16 26 C -0.09 -0.86 5.15 -28.09 -0.14 -1.00 16 27 H 0.05 0.26 7.66 -51.93 -0.40 -0.14 16 28 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.25 7.69 -51.93 -0.40 -0.14 16 30 H 0.13 0.83 6.34 -52.49 -0.33 0.50 16 31 H 0.12 0.84 7.78 -52.49 -0.41 0.43 16 32 H 0.13 1.21 7.92 -52.49 -0.42 0.79 16 33 H 0.09 1.00 8.03 -51.93 -0.42 0.58 16 34 H 0.09 0.74 7.88 -51.93 -0.41 0.33 16 35 H 0.10 1.16 6.97 -51.93 -0.36 0.80 16 36 H 0.08 0.70 6.13 -51.93 -0.32 0.38 16 37 H 0.12 1.99 8.14 -51.93 -0.42 1.57 16 38 H 0.12 2.00 8.14 -51.92 -0.42 1.58 16 39 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.27 7.40 8.31 -40.82 -0.34 7.07 16 42 H 0.09 0.94 7.85 -51.93 -0.41 0.53 16 43 H 0.07 0.78 7.93 -51.93 -0.41 0.37 16 44 H 0.09 0.79 6.26 -51.93 -0.33 0.47 16 45 H 0.08 0.59 7.67 -51.93 -0.40 0.19 16 LS Contribution 372.65 15.07 5.62 5.62 Total: -1.00 -35.34 372.65 -10.58 -45.92 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -6.66 Total: -0.74 kcal Atomic # 6 Polarization: -26.18 SS G_CDS: -2.17 Total: -28.35 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.39 Total: -39.29 kcal Atomic # 8 Polarization: -42.30 SS G_CDS: -2.15 Total: -44.45 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 45.76 SS G_CDS: -0.58 Total: 45.17 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.34 -10.58 -45.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364845635.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.047 kcal (2) G-P(sol) polarization free energy of solvation -35.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds