Wall clock time and date at job start Sat Apr 11 2020 05:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99779 * 2 1 4 4 C 1.38775 * 120.17738 * 359.97167 * 3 2 1 5 5 C 1.37749 * 119.46015 * 179.09401 * 4 3 2 6 6 C 1.39111 * 120.82037 * 359.86386 * 5 4 3 7 7 C 1.37460 * 119.96798 * 1.90745 * 6 5 4 8 8 C 1.38228 * 120.17544 * 180.02562 * 3 2 1 9 9 C 1.50753 * 124.65500 * 177.14240 * 7 6 5 10 10 C 1.52724 * 112.31584 * 30.56059 * 9 7 6 11 11 N 1.47228 * 107.75559 * 274.75480 * 10 9 7 12 12 S 1.65605 * 120.87628 * 238.24186 * 11 10 9 13 13 O 1.42093 * 104.27792 * 26.04616 * 12 11 10 14 14 O 1.42102 * 104.27632 * 153.90812 * 12 11 10 15 15 C 1.81408 * 104.44712 * 269.97694 * 12 11 10 16 16 C 1.52999 * 109.46730 * 180.02562 * 15 12 11 17 17 C 1.50700 * 109.46968 * 180.02562 * 16 15 12 18 18 H 1.07998 * 120.00197 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00208 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99869 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00150 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47216 * 59.99821 * 21 19 17 23 23 H 1.48495 * 109.47023 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46746 * 299.99886 * 21 19 17 25 25 C 1.46294 * 118.24387 * 58.22163 * 11 10 9 26 26 C 1.50251 * 117.00782 * 184.21645 * 6 5 4 27 27 H 1.09005 * 109.47066 * 60.00282 * 1 2 3 28 28 H 1.08999 * 109.46920 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47325 * 300.00502 * 1 2 3 30 30 H 1.07998 * 120.26687 * 359.06897 * 4 3 2 31 31 H 1.08002 * 119.58647 * 179.85080 * 5 4 3 32 32 H 1.07997 * 119.55485 * 0.24304 * 8 3 2 33 33 H 1.09005 * 108.91831 * 269.83065 * 9 7 6 34 34 H 1.08999 * 108.91258 * 151.29013 * 9 7 6 35 35 H 1.08995 * 109.80656 * 155.18639 * 10 9 7 36 36 H 1.09001 * 109.85015 * 34.34497 * 10 9 7 37 37 H 1.08993 * 109.47250 * 299.99925 * 15 12 11 38 38 H 1.08998 * 109.47090 * 60.00388 * 15 12 11 39 39 H 1.09001 * 109.47351 * 299.99942 * 16 15 12 40 40 H 1.09000 * 109.47601 * 59.99946 * 16 15 12 41 41 H 0.96994 * 120.00041 * 179.97438 * 20 19 17 42 42 H 1.09002 * 110.03104 * 151.14999 * 25 11 10 43 43 H 1.09000 * 110.02988 * 272.52091 * 25 11 10 44 44 H 1.09004 * 108.98893 * 108.13213 * 26 6 5 45 45 H 1.09002 * 109.14146 * 349.15217 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2937 2.3770 -0.0006 5 6 1.9342 3.5964 0.0184 6 6 3.3231 3.6717 0.0409 7 6 4.0738 2.5207 0.0048 8 6 3.4261 1.2875 -0.0005 9 6 5.5802 2.4808 -0.0375 10 6 6.2123 3.6720 0.6794 11 7 6.2780 4.7888 -0.2777 12 16 7.7256 5.4964 -0.6599 13 8 8.6866 4.4757 -0.4282 14 8 7.5223 6.0295 -1.9614 15 6 7.9107 6.8322 0.5534 16 6 9.2267 7.5710 0.3016 17 6 9.3809 8.6803 1.3099 18 1 8.6165 8.8425 2.0554 19 6 10.4973 9.4889 1.2801 20 7 11.4279 9.2917 0.3719 21 14 10.6879 10.8645 2.5294 22 1 10.6967 10.2913 3.8993 23 1 11.9646 11.5822 2.2844 24 1 9.5537 11.8138 2.3973 25 6 5.0307 5.2565 -0.8824 26 6 3.9304 5.0409 0.1589 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 0.2149 2.3289 -0.0162 31 1 1.3508 4.5053 0.0155 32 1 4.0101 0.3790 -0.0049 33 1 5.9046 2.4820 -1.0782 34 1 5.9226 1.5609 0.4363 35 1 7.2168 3.4117 1.0128 36 1 5.6008 3.9553 1.5361 37 1 7.0787 7.5295 0.4559 38 1 7.9164 6.4116 1.5589 39 1 10.0591 6.8739 0.3988 40 1 9.2207 7.9917 -0.7039 41 1 12.2130 9.8608 0.3507 42 1 5.1094 6.3155 -1.1287 43 1 4.8123 4.6798 -1.7812 44 1 4.3555 5.1556 1.1560 45 1 3.1521 5.7906 0.0159 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000364845635.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:34 Heat of formation + Delta-G solvation = -110.631381 kcal Electronic energy + Delta-G solvation = -27277.092609 eV Core-core repulsion = 23385.845606 eV Total energy + Delta-G solvation = -3891.247002 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.37883 -39.70785 -38.18334 -37.36636 -36.93332 -35.87125 -34.05446 -33.09781 -32.58170 -30.87877 -28.32600 -27.76000 -27.47824 -25.61597 -23.60711 -23.37438 -22.21330 -21.31158 -19.81885 -19.13950 -18.55764 -18.34176 -17.71159 -17.15089 -17.00497 -16.63633 -16.55900 -16.48132 -16.19757 -15.35726 -15.10983 -14.71919 -14.61918 -14.41089 -14.14449 -14.04318 -13.82455 -13.70683 -13.52269 -13.38597 -13.25288 -13.14108 -13.00931 -12.88908 -12.78058 -12.64284 -12.31575 -12.20664 -12.16356 -12.05748 -11.86955 -11.70921 -11.56928 -11.51662 -11.10734 -10.62678 -9.91495 -9.68876 -8.96895 -8.24472 -6.38585 -0.68095 0.38116 0.48944 1.41725 1.45260 1.53377 1.77590 2.39236 2.40094 2.76746 2.90332 3.08619 3.20688 3.59966 3.83219 3.84098 3.97518 4.09213 4.10210 4.17079 4.20066 4.28311 4.35053 4.40781 4.41761 4.46971 4.54976 4.68172 4.75467 4.78831 4.79075 4.85734 4.90644 5.03505 5.10403 5.27020 5.28563 5.29713 5.34264 5.40482 5.47298 5.61367 5.69696 5.75220 5.91062 6.07805 6.49655 6.75031 7.31431 8.87451 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.026520 B = 0.002350 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.559248 B =11913.312491 C =12343.196025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.341 6.341 3 C 0.110 3.890 4 C -0.211 4.211 5 C -0.078 4.078 6 C -0.119 4.119 7 C -0.038 4.038 8 C -0.174 4.174 9 C -0.092 4.092 10 C 0.113 3.887 11 N -0.998 5.998 12 S 2.613 3.387 13 O -0.993 6.993 14 O -0.995 6.995 15 C -0.586 4.586 16 C 0.020 3.980 17 C -0.538 4.538 18 H 0.077 0.923 19 C -0.006 4.006 20 N -0.935 5.935 21 Si 0.974 3.026 22 H -0.263 1.263 23 H -0.286 1.286 24 H -0.263 1.263 25 C 0.123 3.877 26 C -0.087 4.087 27 H 0.063 0.937 28 H 0.115 0.885 29 H 0.065 0.935 30 H 0.148 0.852 31 H 0.149 0.851 32 H 0.128 0.872 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.005 0.995 40 H 0.005 0.995 41 H 0.267 0.733 42 H 0.091 0.909 43 H 0.063 0.937 44 H 0.096 0.904 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.724 -15.161 2.456 29.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.255 6.255 3 C 0.065 3.935 4 C -0.229 4.229 5 C -0.095 4.095 6 C -0.119 4.119 7 C -0.038 4.038 8 C -0.192 4.192 9 C -0.131 4.131 10 C -0.011 4.011 11 N -0.838 5.838 12 S 2.712 3.288 13 O -0.984 6.984 14 O -0.986 6.986 15 C -0.718 4.718 16 C -0.019 4.019 17 C -0.577 4.577 18 H 0.095 0.905 19 C -0.204 4.204 20 N -0.574 5.574 21 Si 0.798 3.202 22 H -0.187 1.187 23 H -0.211 1.211 24 H -0.187 1.187 25 C -0.002 4.002 26 C -0.125 4.125 27 H 0.082 0.918 28 H 0.134 0.866 29 H 0.083 0.917 30 H 0.166 0.834 31 H 0.167 0.833 32 H 0.146 0.854 33 H 0.091 0.909 34 H 0.118 0.882 35 H 0.114 0.886 36 H 0.119 0.881 37 H 0.160 0.840 38 H 0.160 0.840 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.076 0.924 42 H 0.109 0.891 43 H 0.081 0.919 44 H 0.114 0.886 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -24.928 -15.603 1.659 29.455 hybrid contribution 0.229 0.925 0.573 1.112 sum -24.699 -14.678 2.232 28.818 Atomic orbital electron populations 1.23307 0.76547 1.05386 1.02202 1.86037 1.23403 1.27141 1.88900 1.19055 0.92496 0.84840 0.97086 1.21432 1.01016 0.91971 1.08484 1.21351 0.93464 0.98144 0.96578 1.19552 0.93700 0.94645 1.04035 1.19549 0.95157 0.91773 0.97344 1.20679 0.91975 0.98420 1.08170 1.20840 0.90480 0.99748 1.02011 1.21705 1.03032 0.84499 0.91852 1.57823 1.22262 1.45994 1.57688 1.04741 0.72967 0.75498 0.75638 1.93482 1.61393 1.56420 1.87069 1.93490 1.85247 1.81770 1.38064 1.30378 1.07377 1.16680 1.17373 1.18816 0.90029 0.95658 0.97369 1.21490 1.06038 1.14715 1.15446 0.90532 1.26142 0.95409 1.00759 0.98109 1.70099 1.10397 1.40701 1.36209 0.85357 0.77640 0.78319 0.78888 1.18741 1.21106 1.18718 1.21499 0.82296 1.00184 0.96177 1.20827 0.97896 0.93658 1.00117 0.91829 0.86640 0.91676 0.83429 0.83311 0.85436 0.90920 0.88243 0.88590 0.88117 0.83987 0.83990 0.97685 0.97710 0.92443 0.89099 0.91905 0.88632 0.87659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.82 113.37 1.11 1.29 16 2 O -0.34 -6.13 10.50 -92.39 -0.97 -7.10 16 3 C 0.11 2.09 6.67 22.40 0.15 2.23 16 4 C -0.21 -3.18 9.04 22.28 0.20 -2.98 16 5 C -0.08 -1.13 9.53 22.36 0.21 -0.92 16 6 C -0.12 -2.06 5.26 -19.98 -0.11 -2.17 16 7 C -0.04 -0.74 5.58 -19.78 -0.11 -0.85 16 8 C -0.17 -3.49 9.42 22.52 0.21 -3.27 16 9 C -0.09 -1.84 5.27 29.77 0.16 -1.68 16 10 C 0.11 2.37 5.76 86.15 0.50 2.87 16 11 N -1.00 -25.10 3.07 -514.99 -1.58 -26.68 16 12 S 2.61 93.04 5.42 -56.49 -0.31 92.73 16 13 O -0.99 -41.05 16.66 -127.65 -2.13 -43.17 16 14 O -1.00 -41.67 17.16 -127.65 -2.19 -43.86 16 15 C -0.59 -21.70 6.12 71.98 0.44 -21.26 16 16 C 0.02 1.05 4.98 29.85 0.15 1.20 16 17 C -0.54 -29.63 9.11 25.60 0.23 -29.40 16 18 H 0.08 3.86 7.74 -2.91 -0.02 3.84 16 19 C -0.01 -0.33 5.46 84.66 0.46 0.13 16 20 N -0.93 -56.97 13.29 21.45 0.28 -56.69 16 21 Si 0.97 43.07 29.54 68.60 2.03 45.09 16 22 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 23 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 24 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 25 C 0.12 2.60 5.67 86.43 0.49 3.09 16 26 C -0.09 -1.33 5.15 29.72 0.15 -1.18 16 27 H 0.06 0.46 7.66 -2.38 -0.02 0.44 16 28 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 0.45 7.69 -2.39 -0.02 0.43 16 30 H 0.15 1.48 6.34 -2.91 -0.02 1.46 16 31 H 0.15 1.39 7.78 -2.91 -0.02 1.37 16 32 H 0.13 2.42 7.92 -2.91 -0.02 2.39 16 33 H 0.07 1.66 8.03 -2.38 -0.02 1.64 16 34 H 0.10 1.66 7.88 -2.39 -0.02 1.64 16 35 H 0.10 2.13 6.97 -2.39 -0.02 2.11 16 36 H 0.10 1.62 6.13 -2.39 -0.01 1.61 16 37 H 0.14 4.54 8.14 -2.39 -0.02 4.52 16 38 H 0.14 4.55 8.14 -2.39 -0.02 4.53 16 39 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 40 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 41 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 42 H 0.09 1.83 7.85 -2.39 -0.02 1.82 16 43 H 0.06 1.40 7.93 -2.39 -0.02 1.38 16 44 H 0.10 1.36 6.26 -2.38 -0.01 1.35 16 45 H 0.11 1.12 7.67 -2.39 -0.02 1.10 16 Total: -1.00 -78.14 372.65 0.38 -77.76 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 0.99 Total: 14.82 kcal Atomic # 6 Polarization: -57.16 SS G_CDS: 4.26 Total: -52.90 kcal Atomic # 7 Polarization: -82.08 SS G_CDS: -1.30 Total: -83.37 kcal Atomic # 8 Polarization: -88.85 SS G_CDS: -5.29 Total: -94.13 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Atomic # 16 Polarization: 93.04 SS G_CDS: -0.31 Total: 92.73 kcal Total: -78.14 0.38 -77.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364845635.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.873 kcal (2) G-P(sol) polarization free energy of solvation -78.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds