Wall clock time and date at job start Sat Apr 11 2020 05:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.46974 * 2 1 4 4 N 1.46505 * 109.47354 * 119.99718 * 2 1 3 5 5 S 1.65600 * 120.00296 * 265.00100 * 4 2 1 6 6 O 1.42099 * 106.40072 * 311.46099 * 5 4 2 7 7 O 1.42101 * 106.40217 * 178.53839 * 5 4 2 8 8 C 1.76201 * 107.21545 * 64.99850 * 5 4 2 9 9 C 1.38642 * 119.74760 * 90.00241 * 8 5 4 10 10 C 1.37614 * 120.24522 * 179.97438 * 9 8 5 11 11 C 1.40711 * 119.74615 * 359.97438 * 10 9 8 12 12 C 1.41401 * 120.24291 * 180.02562 * 11 10 9 13 13 H 1.08000 * 119.99707 * 335.39771 * 12 11 10 14 14 C 1.39942 * 120.00035 * 155.40458 * 12 11 10 15 15 N 1.30821 * 119.99873 * 342.72591 * 14 12 11 16 16 Si 1.86797 * 119.99901 * 162.72812 * 14 12 11 17 17 H 1.48505 * 109.47441 * 87.71841 * 16 14 12 18 18 H 1.48499 * 109.47361 * 327.71597 * 16 14 12 19 19 H 1.48500 * 109.47131 * 207.71699 * 16 14 12 20 20 C 1.40710 * 119.51502 * 0.28206 * 11 10 9 21 21 C 1.37620 * 119.74326 * 359.46273 * 20 11 10 22 22 C 1.52997 * 109.47152 * 240.00319 * 2 1 3 23 23 H 1.09005 * 109.51861 * 300.11742 * 22 2 1 24 24 C 1.53175 * 109.52454 * 60.31135 * 22 2 1 25 25 C 1.53178 * 109.03419 * 176.88699 * 24 22 2 26 26 C 1.53087 * 109.16437 * 303.01669 * 25 24 22 27 27 O 1.42904 * 109.41408 * 57.61521 * 26 25 24 28 28 C 1.42905 * 114.09520 * 298.83667 * 27 26 25 29 29 H 1.09001 * 109.47214 * 299.99540 * 1 2 3 30 30 H 1.08993 * 109.47471 * 60.00031 * 1 2 3 31 31 H 1.09000 * 109.46974 * 179.97438 * 1 2 3 32 32 H 0.97000 * 119.99490 * 85.00654 * 4 2 1 33 33 H 1.08000 * 119.87421 * 0.02562 * 9 8 5 34 34 H 1.08002 * 120.12578 * 180.02562 * 10 9 8 35 35 H 0.97003 * 119.99973 * 180.02562 * 15 14 12 36 36 H 1.07995 * 120.13004 * 179.70079 * 20 11 10 37 37 H 1.07998 * 119.88143 * 180.23143 * 21 20 11 38 38 H 1.08995 * 109.54250 * 296.75555 * 24 22 2 39 39 H 1.09002 * 109.54347 * 57.01933 * 24 22 2 40 40 H 1.09006 * 109.51912 * 183.11185 * 25 24 22 41 41 H 1.09004 * 109.52156 * 62.92777 * 25 24 22 42 42 H 1.08994 * 109.48776 * 297.62976 * 26 25 24 43 43 H 1.09005 * 109.47684 * 177.59156 * 26 25 24 44 44 H 1.08993 * 109.48282 * 301.17784 * 28 27 26 45 45 H 1.08993 * 109.48058 * 181.13968 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 16 2.4122 0.1772 2.5505 6 8 3.2436 1.2444 2.1156 7 8 2.8124 -0.7697 3.5315 8 6 0.9275 0.9148 3.1474 9 6 0.1402 0.2328 4.0624 10 6 -1.0212 0.7994 4.5357 11 6 -1.4081 2.0760 4.0880 12 6 -2.5991 2.6683 4.5678 13 1 -3.3996 2.0462 4.9400 14 6 -2.7405 4.0605 4.5602 15 7 -1.6855 4.8244 4.4385 16 14 -4.4356 4.8280 4.7241 17 1 -4.7630 5.0029 6.1620 18 1 -5.4441 3.9406 4.0911 19 1 -4.4473 6.1508 4.0494 20 6 -0.6041 2.7566 3.1551 21 6 0.5559 2.1730 2.6993 22 6 2.0399 -0.7212 -1.2493 23 1 1.6753 -1.7484 -1.2511 24 6 1.5365 0.0045 -2.5007 25 6 2.1166 -0.6797 -3.7423 26 6 3.6445 -0.6819 -3.6473 27 8 4.0447 -1.3447 -2.4462 28 6 3.5709 -0.7218 -1.2504 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 2.1111 -1.6561 1.1949 33 1 0.4399 -0.7464 4.4056 34 1 -1.6328 0.2665 5.2488 35 1 -1.7834 5.7895 4.4336 36 1 -0.8941 3.7347 2.8011 37 1 1.1767 2.6949 1.9861 38 1 0.4479 -0.0400 -2.5348 39 1 1.8594 1.0453 -2.4734 40 1 1.8079 -0.1361 -4.6354 41 1 1.7534 -1.7061 -3.7958 42 1 4.0095 0.3451 -3.6346 43 1 4.0614 -1.2055 -4.5076 44 1 3.9348 0.3046 -1.2064 45 1 3.9348 -1.2742 -0.3841 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389101190.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:44 Heat of formation + Delta-G solvation = -128.209207 kcal Electronic energy + Delta-G solvation = -28033.537834 eV Core-core repulsion = 24141.528600 eV Total energy + Delta-G solvation = -3892.009234 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.74120 -37.62616 -36.75913 -36.30483 -35.13804 -34.06303 -33.35193 -30.94535 -30.31320 -29.49596 -28.98977 -25.83258 -25.21962 -23.85759 -21.57527 -21.51279 -21.13491 -20.32290 -18.86659 -17.63980 -17.20511 -16.79648 -16.17629 -16.09836 -15.74611 -15.52719 -14.94724 -14.56301 -14.34947 -14.15407 -13.50286 -13.35434 -13.32749 -13.22839 -13.12810 -12.58217 -12.47208 -12.22345 -11.97422 -11.83945 -11.63185 -11.47988 -11.42278 -11.32243 -11.29961 -11.26285 -11.20267 -11.02636 -10.87811 -10.52316 -10.44670 -10.41593 -9.82088 -9.72140 -9.55036 -9.48567 -9.06151 -7.96331 -7.72427 -7.15555 -4.82171 1.24040 2.23839 2.85577 2.87234 2.90160 2.93572 3.63718 3.68757 3.75198 4.21937 4.48569 4.56403 4.65080 4.67340 4.75069 4.98475 5.16060 5.17726 5.29856 5.35728 5.38561 5.46346 5.48898 5.61186 5.68627 5.70261 5.77845 5.84882 5.96497 6.03584 6.05876 6.09547 6.13694 6.41619 6.54452 6.66096 6.69349 6.89078 7.02806 7.07509 7.28284 7.33045 7.40679 7.61268 7.74700 7.95124 8.29710 8.49427 8.62728 9.75713 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016044 B = 0.003175 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.741466 B = 8815.669618 C = 9849.964395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.160 3.840 3 H 0.091 0.909 4 N -1.123 6.123 5 S 2.691 3.309 6 O -0.984 6.984 7 O -0.986 6.986 8 C -0.785 4.785 9 C 0.004 3.996 10 C -0.239 4.239 11 C 0.140 3.860 12 C -0.436 4.436 13 H 0.087 0.913 14 C 0.072 3.928 15 N -0.765 5.765 16 Si 0.916 3.084 17 H -0.265 1.265 18 H -0.257 1.257 19 H -0.272 1.272 20 C -0.182 4.182 21 C -0.015 4.015 22 C -0.123 4.123 23 H 0.084 0.916 24 C -0.120 4.120 25 C -0.154 4.154 26 C 0.057 3.943 27 O -0.384 6.384 28 C 0.063 3.937 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.410 0.590 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.289 0.711 36 H 0.122 0.878 37 H 0.102 0.898 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.050 0.950 43 H 0.090 0.910 44 H 0.056 0.944 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.305 -6.065 -13.326 14.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.052 3.948 3 H 0.109 0.891 4 N -0.878 5.878 5 S 2.790 3.210 6 O -0.974 6.974 7 O -0.977 6.977 8 C -0.881 4.881 9 C -0.016 4.016 10 C -0.260 4.260 11 C 0.137 3.863 12 C -0.463 4.463 13 H 0.105 0.895 14 C -0.150 4.150 15 N -0.387 5.387 16 Si 0.739 3.261 17 H -0.190 1.190 18 H -0.181 1.181 19 H -0.197 1.197 20 C -0.202 4.202 21 C -0.035 4.035 22 C -0.144 4.144 23 H 0.103 0.897 24 C -0.158 4.158 25 C -0.192 4.192 26 C -0.019 4.019 27 O -0.303 6.303 28 C -0.014 4.014 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.242 0.758 33 H 0.121 0.879 34 H 0.117 0.883 35 H 0.101 0.899 36 H 0.139 0.861 37 H 0.120 0.880 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.068 0.932 43 H 0.108 0.892 44 H 0.074 0.926 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.391 -5.715 -12.986 14.587 hybrid contribution -1.682 0.467 0.209 1.758 sum 1.709 -5.248 -12.777 13.918 Atomic orbital electron populations 1.22425 0.94800 1.02733 1.03639 1.20639 0.94428 0.96248 0.83444 0.89112 1.55873 1.84284 1.19261 1.28403 1.01274 0.74959 0.72868 0.71927 1.93487 1.66116 1.55777 1.82018 1.93493 1.82737 1.63085 1.58385 1.29104 1.26566 1.09361 1.23109 1.20143 0.92880 0.96411 0.92204 1.21017 0.99173 0.99256 1.06519 1.17837 0.90939 0.90450 0.87092 1.19926 1.01014 0.91605 1.33760 0.89517 1.26134 0.99107 0.97671 0.92101 1.69819 1.31001 1.07008 1.30902 0.86168 0.81369 0.78823 0.79702 1.18998 1.18068 1.19674 1.21326 0.96636 1.01452 1.00829 1.20222 0.95251 0.91933 0.96137 1.22055 0.96713 1.01022 0.94592 0.89733 1.21700 1.01316 0.99551 0.93228 1.22183 0.96621 1.01858 0.98558 1.22582 0.94092 0.97466 0.87801 1.87931 1.74677 1.53740 1.13926 1.22676 0.92768 0.98643 0.87279 0.90151 0.91764 0.92302 0.75763 0.87896 0.88275 0.89937 0.86061 0.88040 0.90596 0.91328 0.90899 0.91106 0.93186 0.89199 0.92551 0.88607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.25 9.17 37.15 0.34 -1.91 16 2 C 0.16 2.03 2.49 -67.93 -0.17 1.87 16 3 H 0.09 1.24 7.50 -51.93 -0.39 0.86 16 4 N -1.12 -15.69 4.76 -4.89 -0.02 -15.71 16 5 S 2.69 50.36 5.71 -107.50 -0.61 49.74 16 6 O -0.98 -20.52 16.60 -57.17 -0.95 -21.47 16 7 O -0.99 -20.68 17.26 -57.17 -0.99 -21.67 16 8 C -0.79 -16.62 5.08 -39.29 -0.20 -16.82 16 9 C 0.00 0.08 9.49 -39.66 -0.38 -0.29 16 10 C -0.24 -5.52 9.80 -38.88 -0.38 -5.90 16 11 C 0.14 3.46 5.57 -106.83 -0.60 2.87 16 12 C -0.44 -10.47 9.06 -37.74 -0.34 -10.81 16 13 H 0.09 1.97 7.90 -52.49 -0.41 1.55 16 14 C 0.07 1.64 5.15 -17.34 -0.09 1.55 16 15 N -0.77 -18.06 10.95 55.55 0.61 -17.45 16 16 Si 0.92 16.72 29.59 -169.99 -5.03 11.69 16 17 H -0.27 -4.81 7.11 56.52 0.40 -4.41 16 18 H -0.26 -4.64 7.11 56.52 0.40 -4.24 16 19 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 20 C -0.18 -4.39 8.69 -38.87 -0.34 -4.72 16 21 C -0.02 -0.33 8.55 -39.66 -0.34 -0.67 16 22 C -0.12 -1.32 2.08 -90.48 -0.19 -1.51 16 23 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 24 C -0.12 -1.10 4.87 -26.55 -0.13 -1.23 16 25 C -0.15 -1.26 6.14 -26.59 -0.16 -1.42 16 26 C 0.06 0.52 6.84 37.20 0.25 0.78 16 27 O -0.38 -4.61 10.77 -35.23 -0.38 -4.99 16 28 C 0.06 0.74 5.93 37.21 0.22 0.96 16 29 H 0.08 1.25 6.17 -51.93 -0.32 0.93 16 30 H 0.06 0.70 6.51 -51.93 -0.34 0.36 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.41 4.77 8.84 -34.47 -0.30 4.47 16 33 H 0.10 2.04 7.60 -52.49 -0.40 1.64 16 34 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 35 H 0.29 6.13 8.30 -40.82 -0.34 5.79 16 36 H 0.12 2.97 6.17 -52.49 -0.32 2.65 16 37 H 0.10 2.08 7.60 -52.49 -0.40 1.69 16 38 H 0.08 0.65 6.63 -51.93 -0.34 0.30 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.10 1.14 7.69 -51.93 -0.40 0.74 16 LS Contribution 369.97 15.07 5.58 5.58 Total: -1.00 -29.45 369.97 -10.87 -40.32 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -6.57 Total: 11.24 kcal Atomic # 6 Polarization: -34.78 SS G_CDS: -2.49 Total: -37.27 kcal Atomic # 7 Polarization: -33.75 SS G_CDS: 0.58 Total: -33.16 kcal Atomic # 8 Polarization: -45.81 SS G_CDS: -2.31 Total: -48.13 kcal Atomic # 14 Polarization: 16.72 SS G_CDS: -5.03 Total: 11.69 kcal Atomic # 16 Polarization: 50.36 SS G_CDS: -0.61 Total: 49.74 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.45 -10.87 -40.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389101190.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.890 kcal (2) G-P(sol) polarization free energy of solvation -29.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds