Wall clock time and date at job start Sat Apr 11 2020 05:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35903 * 116.99645 * 2 1 4 4 C 1.38646 * 119.95204 * 0.02562 * 3 2 1 5 5 C 1.38124 * 119.86855 * 180.02562 * 4 3 2 6 6 C 1.38176 * 119.99749 * 359.97438 * 5 4 3 7 7 C 1.38490 * 120.33684 * 359.97438 * 6 5 4 8 8 C 1.38168 * 119.88062 * 0.02562 * 7 6 5 9 9 C 1.51669 * 109.86483 * 180.15716 * 8 7 6 10 10 C 1.54358 * 105.01085 * 16.91450 * 9 8 7 11 11 H 1.08994 * 110.82194 * 92.22685 * 10 9 8 12 12 N 1.46500 * 110.81848 * 215.58255 * 10 9 8 13 13 S 1.65598 * 119.99523 * 212.29053 * 12 10 9 14 14 O 1.42101 * 104.28071 * 308.93108 * 13 12 10 15 15 O 1.42103 * 104.27787 * 181.07577 * 13 12 10 16 16 C 1.81403 * 104.45114 * 65.00132 * 13 12 10 17 17 C 1.52994 * 109.47158 * 179.97438 * 16 13 12 18 18 C 1.52996 * 109.47119 * 179.97438 * 17 16 13 19 19 C 1.50702 * 109.47159 * 180.02562 * 18 17 16 20 20 H 1.08002 * 120.00299 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99942 * 179.72211 * 19 18 17 22 22 N 1.31514 * 119.99698 * 0.28408 * 21 19 18 23 23 Si 1.86794 * 119.99837 * 180.27476 * 21 19 18 24 24 H 1.48496 * 109.47341 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.46983 * 120.00379 * 23 21 19 26 26 H 1.48503 * 109.47491 * 240.00192 * 23 21 19 27 27 C 1.51382 * 130.37041 * 180.02562 * 7 6 5 28 28 H 1.08995 * 109.46703 * 179.97438 * 1 2 3 29 29 H 1.08990 * 109.47350 * 300.00769 * 1 2 3 30 30 H 1.08999 * 109.46380 * 60.00467 * 1 2 3 31 31 H 1.07998 * 120.06449 * 359.97438 * 4 3 2 32 32 H 1.07998 * 119.99995 * 180.02562 * 5 4 3 33 33 H 1.08006 * 119.82952 * 180.02562 * 6 5 4 34 34 H 1.08994 * 110.25377 * 258.10594 * 9 8 7 35 35 H 1.09002 * 110.49895 * 135.84262 * 9 8 7 36 36 H 0.96997 * 120.00089 * 32.29500 * 12 10 9 37 37 H 1.08998 * 109.46785 * 60.00241 * 16 13 12 38 38 H 1.08994 * 109.46954 * 300.00048 * 16 13 12 39 39 H 1.09004 * 109.46806 * 60.00263 * 17 16 13 40 40 H 1.09000 * 109.47828 * 300.00567 * 17 16 13 41 41 H 1.09004 * 109.47066 * 60.00422 * 18 17 16 42 42 H 1.08994 * 109.47405 * 300.00252 * 18 17 16 43 43 H 0.97005 * 119.99651 * 179.97438 * 22 21 19 44 44 H 1.09003 * 110.30287 * 43.89085 * 27 7 6 45 45 H 1.09005 * 110.37952 * 281.78737 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2898 2.3730 0.0005 5 6 1.9186 3.6029 0.0000 6 6 3.2985 3.6732 -0.0005 7 6 4.0579 2.5151 0.0000 8 6 3.4336 1.2825 0.0005 9 6 4.4732 0.1782 0.0050 10 6 5.7847 0.8655 0.4408 11 1 5.9150 0.8021 1.5211 12 7 6.9344 0.2825 -0.2553 13 16 8.4058 0.2015 0.5002 14 8 8.6303 1.5226 0.9729 15 8 9.2647 -0.3862 -0.4673 16 6 8.1396 -0.9347 1.8891 17 6 9.4429 -1.0947 2.6742 18 6 9.2182 -2.0525 3.8459 19 6 10.5019 -2.2096 4.6196 20 1 11.3892 -1.6790 4.3071 21 6 10.5420 -3.0259 5.7301 22 7 9.4615 -3.6717 6.1108 23 14 12.1312 -3.2145 6.6936 24 1 13.1927 -2.3886 6.0642 25 1 11.9183 -2.7640 8.0926 26 1 12.5457 -4.6405 6.6905 27 6 5.5601 2.3275 0.0001 28 1 -0.3632 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8898 30 1 -0.3632 0.5138 -0.8901 31 1 0.2113 2.3168 0.0005 32 1 1.3316 4.5094 0.0008 33 1 3.7874 4.6363 -0.0005 34 1 4.5808 -0.2427 -0.9947 35 1 4.1997 -0.6006 0.7169 36 1 6.8338 -0.0560 -1.1587 37 1 7.8236 -1.9060 1.5084 38 1 7.3671 -0.5326 2.5445 39 1 9.7593 -0.1235 3.0548 40 1 10.2152 -1.4970 2.0185 41 1 8.9016 -3.0238 3.4656 42 1 8.4462 -1.6498 4.5015 43 1 9.4898 -4.2463 6.8919 44 1 6.0267 3.0121 0.7086 45 1 5.9627 2.4872 -1.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416554783.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:15 Heat of formation + Delta-G solvation = -99.918656 kcal Electronic energy + Delta-G solvation = -26650.985393 eV Core-core repulsion = 22760.202930 eV Total energy + Delta-G solvation = -3890.782464 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.87156 -38.75580 -36.92463 -36.44076 -35.73758 -34.66869 -32.99369 -32.18469 -31.00761 -28.58180 -27.81703 -27.46306 -27.15591 -23.73356 -22.52600 -21.40913 -21.10304 -20.69560 -19.27916 -17.87784 -17.60048 -16.89920 -16.54410 -16.37245 -16.01144 -15.74721 -15.70013 -15.28743 -14.75596 -14.48695 -14.35825 -14.19846 -13.54478 -13.18070 -13.09522 -13.02070 -12.61539 -12.48873 -12.28483 -12.08484 -11.94896 -11.85818 -11.78623 -11.75463 -11.59035 -11.46042 -11.23481 -11.21066 -11.14219 -10.93029 -10.82864 -10.41281 -9.95006 -9.76008 -9.32461 -9.07724 -8.86457 -8.41589 -8.40700 -6.05421 -4.08281 0.45367 1.00276 1.15993 2.79672 2.97883 3.29782 3.37331 3.42287 3.42653 3.89433 4.08939 4.27865 4.38321 4.43013 4.57106 4.65294 4.75968 4.77566 4.79235 4.83993 4.98743 5.09190 5.13265 5.16841 5.21031 5.30591 5.33006 5.45560 5.49489 5.55067 5.68074 5.87229 5.89388 5.95558 6.08391 6.15832 6.27047 6.29806 6.45357 6.48610 6.85981 6.88978 7.08027 7.57767 7.67424 7.92854 8.33288 8.98256 9.56466 11.05852 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014253 B = 0.002379 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.053892 B =11766.151723 C =12814.460228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.315 6.315 3 C 0.142 3.858 4 C -0.212 4.212 5 C -0.079 4.079 6 C -0.144 4.144 7 C -0.051 4.051 8 C -0.130 4.130 9 C -0.076 4.076 10 C 0.153 3.847 11 H 0.103 0.897 12 N -1.115 6.115 13 S 2.598 3.402 14 O -0.959 6.959 15 O -0.963 6.963 16 C -0.610 4.610 17 C -0.106 4.106 18 C 0.030 3.970 19 C -0.525 4.525 20 H 0.059 0.941 21 C 0.057 3.943 22 N -0.895 5.895 23 Si 0.894 3.106 24 H -0.271 1.271 25 H -0.283 1.283 26 H -0.283 1.283 27 C -0.099 4.099 28 H 0.100 0.900 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.129 0.871 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.416 0.584 37 H 0.130 0.870 38 H 0.126 0.874 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.021 0.979 42 H 0.021 0.979 43 H 0.261 0.739 44 H 0.092 0.908 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.224 11.820 -15.334 27.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.228 6.228 3 C 0.097 3.903 4 C -0.231 4.231 5 C -0.097 4.097 6 C -0.162 4.162 7 C -0.051 4.051 8 C -0.131 4.131 9 C -0.114 4.114 10 C 0.045 3.955 11 H 0.121 0.879 12 N -0.871 5.871 13 S 2.694 3.306 14 O -0.948 6.948 15 O -0.953 6.953 16 C -0.741 4.741 17 C -0.145 4.145 18 C -0.008 4.008 19 C -0.564 4.564 20 H 0.077 0.923 21 C -0.144 4.144 22 N -0.534 5.534 23 Si 0.722 3.278 24 H -0.196 1.196 25 H -0.210 1.210 26 H -0.209 1.209 27 C -0.137 4.137 28 H 0.118 0.882 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.147 0.853 32 H 0.144 0.856 33 H 0.142 0.858 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.250 0.750 37 H 0.148 0.852 38 H 0.145 0.855 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.039 0.961 42 H 0.039 0.961 43 H 0.070 0.930 44 H 0.110 0.890 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -19.393 12.048 -15.316 27.492 hybrid contribution -0.216 -0.585 0.594 0.861 sum -19.609 11.463 -14.722 27.068 Atomic orbital electron populations 1.23058 0.78485 1.04017 1.01238 1.86105 1.21262 1.26907 1.88568 1.18595 0.90671 0.84382 0.96695 1.21114 0.99869 0.92214 1.09902 1.20820 0.94234 0.97001 0.97670 1.20568 0.93387 0.97726 1.04501 1.20396 0.95639 0.92377 0.96717 1.19770 0.90433 0.96256 1.06617 1.21243 0.90822 0.96239 1.03120 1.21350 0.85494 0.91970 0.96710 0.87923 1.55817 1.27128 1.76748 1.27425 1.05390 0.72676 0.76194 0.76294 1.93579 1.83538 1.35171 1.82552 1.93584 1.63386 1.79850 1.58466 1.30560 1.09640 1.16307 1.17642 1.21499 0.90946 1.02810 0.99261 1.19070 0.97465 0.93454 0.90853 1.21295 0.96551 1.27330 1.11178 0.92311 1.25026 0.96472 0.95579 0.97360 1.69970 1.27831 1.29744 1.25874 0.86501 0.83587 0.77903 0.79829 1.19599 1.20951 1.20949 1.21608 0.90844 0.97494 1.03800 0.88197 0.92628 0.92761 0.85348 0.85590 0.85824 0.89411 0.89489 0.74994 0.85165 0.85542 0.91541 0.91555 0.96100 0.96105 0.92961 0.88956 0.88880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.07 10.44 -19.43 -0.20 -3.27 16 3 C 0.14 1.44 6.69 -39.17 -0.26 1.18 16 4 C -0.21 -1.80 9.03 -39.47 -0.36 -2.15 16 5 C -0.08 -0.64 10.04 -39.65 -0.40 -1.03 16 6 C -0.14 -1.28 10.04 -39.51 -0.40 -1.68 16 7 C -0.05 -0.51 6.14 -104.22 -0.64 -1.15 16 8 C -0.13 -1.35 6.12 -103.91 -0.64 -1.99 16 9 C -0.08 -0.71 6.45 -26.69 -0.17 -0.88 16 10 C 0.15 1.51 3.49 -66.52 -0.23 1.28 16 11 H 0.10 0.97 7.28 -51.93 -0.38 0.59 16 12 N -1.12 -11.43 5.46 -3.69 -0.02 -11.45 16 13 S 2.60 36.74 5.40 -107.50 -0.58 36.16 16 14 O -0.96 -16.11 17.82 -57.54 -1.03 -17.13 16 15 O -0.96 -16.52 18.08 -57.54 -1.04 -17.56 16 16 C -0.61 -9.16 5.98 37.15 0.22 -8.93 16 17 C -0.11 -2.12 5.16 -26.74 -0.14 -2.26 16 18 C 0.03 0.75 4.97 -27.88 -0.14 0.62 16 19 C -0.53 -14.79 9.11 -34.44 -0.31 -15.10 16 20 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 22 N -0.90 -26.59 13.29 55.43 0.74 -25.86 16 23 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 24 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 27 C -0.10 -0.98 6.50 -26.84 -0.17 -1.15 16 28 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.27 7.65 -51.93 -0.40 -0.13 16 30 H 0.05 0.25 7.66 -51.93 -0.40 -0.15 16 31 H 0.13 0.79 6.29 -52.49 -0.33 0.46 16 32 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 33 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 34 H 0.09 0.73 7.86 -51.93 -0.41 0.32 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.42 3.44 8.62 -34.47 -0.30 3.14 16 37 H 0.13 1.75 8.14 -51.92 -0.42 1.33 16 38 H 0.13 1.67 7.50 -51.93 -0.39 1.28 16 39 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 41 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.09 0.86 8.08 -51.93 -0.42 0.45 16 LS Contribution 384.56 15.07 5.80 5.80 Total: -1.00 -36.10 384.56 -10.89 -46.98 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -6.79 Total: 0.31 kcal Atomic # 6 Polarization: -27.84 SS G_CDS: -2.74 Total: -30.58 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: 0.72 Total: -37.31 kcal Atomic # 8 Polarization: -35.70 SS G_CDS: -2.27 Total: -37.96 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: 36.74 SS G_CDS: -0.58 Total: 36.16 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.10 -10.89 -46.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416554783.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.934 kcal (2) G-P(sol) polarization free energy of solvation -36.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds