Wall clock time and date at job start Sat Apr 11 2020 05:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35903 * 116.99645 * 2 1 4 4 C 1.38646 * 119.95204 * 0.02562 * 3 2 1 5 5 C 1.38124 * 119.86855 * 180.02562 * 4 3 2 6 6 C 1.38176 * 119.99749 * 359.97438 * 5 4 3 7 7 C 1.38490 * 120.33684 * 359.97438 * 6 5 4 8 8 C 1.38168 * 119.88062 * 0.02562 * 7 6 5 9 9 C 1.51669 * 109.86483 * 180.15716 * 8 7 6 10 10 C 1.54358 * 105.01085 * 16.91450 * 9 8 7 11 11 H 1.08994 * 110.82194 * 92.22685 * 10 9 8 12 12 N 1.46500 * 110.81848 * 215.58255 * 10 9 8 13 13 S 1.65598 * 119.99523 * 212.29053 * 12 10 9 14 14 O 1.42101 * 104.28071 * 308.93108 * 13 12 10 15 15 O 1.42103 * 104.27787 * 181.07577 * 13 12 10 16 16 C 1.81403 * 104.45114 * 65.00132 * 13 12 10 17 17 C 1.52994 * 109.47158 * 179.97438 * 16 13 12 18 18 C 1.52996 * 109.47119 * 179.97438 * 17 16 13 19 19 C 1.50702 * 109.47159 * 180.02562 * 18 17 16 20 20 H 1.08002 * 120.00299 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99942 * 179.72211 * 19 18 17 22 22 N 1.31514 * 119.99698 * 0.28408 * 21 19 18 23 23 Si 1.86794 * 119.99837 * 180.27476 * 21 19 18 24 24 H 1.48496 * 109.47341 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.46983 * 120.00379 * 23 21 19 26 26 H 1.48503 * 109.47491 * 240.00192 * 23 21 19 27 27 C 1.51382 * 130.37041 * 180.02562 * 7 6 5 28 28 H 1.08995 * 109.46703 * 179.97438 * 1 2 3 29 29 H 1.08990 * 109.47350 * 300.00769 * 1 2 3 30 30 H 1.08999 * 109.46380 * 60.00467 * 1 2 3 31 31 H 1.07998 * 120.06449 * 359.97438 * 4 3 2 32 32 H 1.07998 * 119.99995 * 180.02562 * 5 4 3 33 33 H 1.08006 * 119.82952 * 180.02562 * 6 5 4 34 34 H 1.08994 * 110.25377 * 258.10594 * 9 8 7 35 35 H 1.09002 * 110.49895 * 135.84262 * 9 8 7 36 36 H 0.96997 * 120.00089 * 32.29500 * 12 10 9 37 37 H 1.08998 * 109.46785 * 60.00241 * 16 13 12 38 38 H 1.08994 * 109.46954 * 300.00048 * 16 13 12 39 39 H 1.09004 * 109.46806 * 60.00263 * 17 16 13 40 40 H 1.09000 * 109.47828 * 300.00567 * 17 16 13 41 41 H 1.09004 * 109.47066 * 60.00422 * 18 17 16 42 42 H 1.08994 * 109.47405 * 300.00252 * 18 17 16 43 43 H 0.97005 * 119.99651 * 179.97438 * 22 21 19 44 44 H 1.09003 * 110.30287 * 43.89085 * 27 7 6 45 45 H 1.09005 * 110.37952 * 281.78737 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2898 2.3730 0.0005 5 6 1.9186 3.6029 0.0000 6 6 3.2985 3.6732 -0.0005 7 6 4.0579 2.5151 0.0000 8 6 3.4336 1.2825 0.0005 9 6 4.4732 0.1782 0.0050 10 6 5.7847 0.8655 0.4408 11 1 5.9150 0.8021 1.5211 12 7 6.9344 0.2825 -0.2553 13 16 8.4058 0.2015 0.5002 14 8 8.6303 1.5226 0.9729 15 8 9.2647 -0.3862 -0.4673 16 6 8.1396 -0.9347 1.8891 17 6 9.4429 -1.0947 2.6742 18 6 9.2182 -2.0525 3.8459 19 6 10.5019 -2.2096 4.6196 20 1 11.3892 -1.6790 4.3071 21 6 10.5420 -3.0259 5.7301 22 7 9.4615 -3.6717 6.1108 23 14 12.1312 -3.2145 6.6936 24 1 13.1927 -2.3886 6.0642 25 1 11.9183 -2.7640 8.0926 26 1 12.5457 -4.6405 6.6905 27 6 5.5601 2.3275 0.0001 28 1 -0.3632 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8898 30 1 -0.3632 0.5138 -0.8901 31 1 0.2113 2.3168 0.0005 32 1 1.3316 4.5094 0.0008 33 1 3.7874 4.6363 -0.0005 34 1 4.5808 -0.2427 -0.9947 35 1 4.1997 -0.6006 0.7169 36 1 6.8338 -0.0560 -1.1587 37 1 7.8236 -1.9060 1.5084 38 1 7.3671 -0.5326 2.5445 39 1 9.7593 -0.1235 3.0548 40 1 10.2152 -1.4970 2.0185 41 1 8.9016 -3.0238 3.4656 42 1 8.4462 -1.6498 4.5015 43 1 9.4898 -4.2463 6.8919 44 1 6.0267 3.0121 0.7086 45 1 5.9627 2.4872 -1.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416554783.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:14 Heat of formation + Delta-G solvation = -124.586650 kcal Electronic energy + Delta-G solvation = -26652.055078 eV Core-core repulsion = 22760.202930 eV Total energy + Delta-G solvation = -3891.852148 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.53300 -39.43220 -38.16271 -37.21842 -37.00200 -36.45729 -34.15808 -33.79723 -31.65882 -29.65328 -29.23912 -28.15883 -27.72525 -25.62446 -23.24398 -22.45028 -22.08086 -21.79463 -20.41358 -18.79428 -18.56586 -18.46023 -17.66828 -17.22148 -17.06924 -16.70856 -16.47427 -16.40788 -16.32430 -15.62654 -15.45295 -15.00783 -14.51764 -14.30923 -14.08948 -13.86266 -13.78414 -13.73667 -13.49190 -13.21781 -13.12667 -13.10613 -12.97655 -12.80017 -12.77213 -12.62210 -12.55962 -12.30769 -12.18787 -12.11724 -11.83169 -11.78366 -11.72154 -11.35998 -11.10825 -10.57701 -10.43848 -9.54164 -9.07477 -8.22532 -6.33280 -0.73611 0.33931 0.49091 1.39798 1.40520 1.53800 1.74590 2.40037 2.42552 2.73733 2.77479 3.11138 3.24151 3.35449 3.53726 3.76872 3.89897 3.98309 4.00530 4.07877 4.10683 4.31159 4.37187 4.41217 4.41720 4.47078 4.56181 4.67623 4.73517 4.76789 4.83431 4.87318 4.94154 4.97239 5.07646 5.20311 5.22530 5.38888 5.46487 5.51330 5.62645 5.63897 5.80243 5.85903 6.09355 6.20245 6.47584 6.82788 7.36062 8.89189 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014253 B = 0.002379 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.053892 B =11766.151723 C =12814.460228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.336 6.336 3 C 0.125 3.875 4 C -0.215 4.215 5 C -0.080 4.080 6 C -0.154 4.154 7 C -0.063 4.063 8 C -0.151 4.151 9 C -0.071 4.071 10 C 0.147 3.853 11 H 0.107 0.893 12 N -1.097 6.097 13 S 2.632 3.368 14 O -0.983 6.983 15 O -0.990 6.990 16 C -0.613 4.613 17 C -0.106 4.106 18 C 0.030 3.970 19 C -0.551 4.551 20 H 0.060 0.940 21 C 0.002 3.998 22 N -0.930 5.930 23 Si 0.963 3.037 24 H -0.264 1.264 25 H -0.277 1.277 26 H -0.277 1.277 27 C -0.099 4.099 28 H 0.113 0.887 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.150 0.850 32 H 0.153 0.847 33 H 0.137 0.863 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.428 0.572 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.002 0.998 42 H 0.003 0.997 43 H 0.265 0.735 44 H 0.087 0.913 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.052 12.634 -15.870 29.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.080 3.920 4 C -0.233 4.233 5 C -0.098 4.098 6 C -0.172 4.172 7 C -0.064 4.064 8 C -0.152 4.152 9 C -0.110 4.110 10 C 0.039 3.961 11 H 0.125 0.875 12 N -0.857 5.857 13 S 2.727 3.273 14 O -0.972 6.972 15 O -0.981 6.981 16 C -0.743 4.743 17 C -0.146 4.146 18 C -0.008 4.008 19 C -0.589 4.589 20 H 0.079 0.921 21 C -0.196 4.196 22 N -0.570 5.570 23 Si 0.788 3.212 24 H -0.188 1.188 25 H -0.202 1.202 26 H -0.202 1.202 27 C -0.137 4.137 28 H 0.132 0.868 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.168 0.832 32 H 0.170 0.830 33 H 0.155 0.845 34 H 0.115 0.885 35 H 0.104 0.896 36 H 0.265 0.735 37 H 0.165 0.835 38 H 0.162 0.838 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.021 0.979 42 H 0.021 0.979 43 H 0.073 0.927 44 H 0.106 0.894 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -20.221 12.857 -15.863 28.737 hybrid contribution -0.096 -0.817 0.730 1.100 sum -20.317 12.040 -15.133 28.049 Atomic orbital electron populations 1.23310 0.76696 1.05345 1.02205 1.86069 1.23242 1.27054 1.88644 1.18829 0.90883 0.85108 0.97173 1.21427 1.01021 0.91851 1.09021 1.21174 0.94138 0.97944 0.96509 1.20850 0.94029 0.98022 1.04318 1.20485 0.95563 0.92825 0.97516 1.19967 0.91046 0.96632 1.07558 1.21199 0.90162 0.96018 1.03594 1.21502 0.85335 0.92288 0.96962 0.87512 1.55376 1.26077 1.76524 1.27727 1.04211 0.72804 0.75006 0.75319 1.93548 1.84370 1.36346 1.82978 1.93543 1.65095 1.80212 1.59208 1.30538 1.07546 1.18062 1.18177 1.21308 0.93726 1.01433 0.98089 1.18972 0.95890 0.93731 0.92239 1.21777 0.97732 1.27450 1.11901 0.92141 1.25942 1.00025 0.95200 0.98480 1.70081 1.29980 1.30425 1.26538 0.85427 0.79368 0.78126 0.78325 1.18760 1.20236 1.20248 1.21586 0.91143 0.97118 1.03901 0.86831 0.91813 0.91556 0.83217 0.82970 0.84503 0.88503 0.89586 0.73488 0.83514 0.83758 0.91406 0.91539 0.97914 0.97852 0.92657 0.89438 0.88463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.34 -6.26 10.44 -92.45 -0.97 -7.22 16 3 C 0.13 2.42 6.69 22.54 0.15 2.57 16 4 C -0.21 -3.25 9.03 22.34 0.20 -3.05 16 5 C -0.08 -1.12 10.04 22.23 0.22 -0.90 16 6 C -0.15 -2.54 10.04 22.32 0.22 -2.31 16 7 C -0.06 -1.21 6.14 -19.60 -0.12 -1.33 16 8 C -0.15 -3.04 6.12 -19.40 -0.12 -3.16 16 9 C -0.07 -1.27 6.45 30.62 0.20 -1.07 16 10 C 0.15 2.76 3.49 45.91 0.16 2.92 16 11 H 0.11 1.92 7.28 -2.39 -0.02 1.90 16 12 N -1.10 -21.05 5.46 -165.58 -0.90 -21.96 16 13 S 2.63 71.99 5.40 -56.49 -0.30 71.69 16 14 O -0.98 -32.25 17.82 -127.65 -2.27 -34.53 16 15 O -0.99 -33.14 18.08 -127.65 -2.31 -35.45 16 16 C -0.61 -17.97 5.98 71.98 0.43 -17.54 16 17 C -0.11 -4.29 5.16 30.59 0.16 -4.13 16 18 C 0.03 1.54 4.97 29.85 0.15 1.69 16 19 C -0.55 -31.38 9.11 25.60 0.23 -31.15 16 20 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 21 C 0.00 0.09 5.46 84.66 0.46 0.56 16 22 N -0.93 -55.95 13.29 21.45 0.28 -55.66 16 23 Si 0.96 44.35 29.54 68.60 2.03 46.37 16 24 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 25 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 26 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 27 C -0.10 -1.87 6.50 30.52 0.20 -1.67 16 28 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.52 7.65 -2.39 -0.02 0.50 16 30 H 0.07 0.49 7.66 -2.39 -0.02 0.47 16 31 H 0.15 1.49 6.29 -2.91 -0.02 1.47 16 32 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 33 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 34 H 0.10 1.50 7.86 -2.39 -0.02 1.48 16 35 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.43 6.38 8.62 -96.75 -0.83 5.55 16 37 H 0.15 3.80 8.14 -2.39 -0.02 3.78 16 38 H 0.14 3.69 7.50 -2.39 -0.02 3.67 16 39 H 0.07 2.67 8.14 -2.38 -0.02 2.65 16 40 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 41 H 0.00 0.13 8.14 -2.38 -0.02 0.11 16 42 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 43 H 0.26 14.88 8.31 -92.70 -0.77 14.11 16 44 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.10 1.71 8.08 -2.38 -0.02 1.69 16 Total: -1.00 -77.34 384.56 -0.62 -77.96 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.16 Total: 16.08 kcal Atomic # 6 Polarization: -60.95 SS G_CDS: 3.66 Total: -57.28 kcal Atomic # 7 Polarization: -77.00 SS G_CDS: -0.62 Total: -77.62 kcal Atomic # 8 Polarization: -71.65 SS G_CDS: -5.55 Total: -77.20 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 16 Polarization: 71.99 SS G_CDS: -0.30 Total: 71.69 kcal Total: -77.34 -0.62 -77.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416554783.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.625 kcal (2) G-P(sol) polarization free energy of solvation -77.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds