Wall clock time and date at job start Sat Apr 11 2020 05:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35897 * 116.99822 * 2 1 4 4 C 1.38751 * 120.05706 * 359.97438 * 3 2 1 5 5 C 1.38124 * 119.94692 * 179.97438 * 4 3 2 6 6 C 1.38287 * 120.05419 * 359.97438 * 5 4 3 7 7 C 1.38245 * 120.11339 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.97683 * 179.74899 * 7 6 5 9 9 H 1.08999 * 115.55322 * 154.27933 * 8 7 6 10 10 C 1.53007 * 117.49512 * 8.60201 * 8 7 6 11 11 C 1.52997 * 59.99871 * 252.51566 * 10 8 7 12 12 H 1.09001 * 117.49899 * 107.49832 * 11 10 8 13 13 C 1.52999 * 117.49907 * 252.50901 * 11 10 8 14 14 N 1.46498 * 109.47290 * 243.62759 * 13 11 10 15 15 S 1.65608 * 120.00114 * 165.00068 * 14 13 11 16 16 O 1.42105 * 104.27741 * 181.07133 * 15 14 13 17 17 O 1.42098 * 104.27420 * 308.92684 * 15 14 13 18 18 C 1.81399 * 104.44737 * 64.99846 * 15 14 13 19 19 C 1.53006 * 109.46648 * 179.97438 * 18 15 14 20 20 C 1.50700 * 109.46824 * 179.97438 * 19 18 15 21 21 H 1.08005 * 120.00335 * 0.02562 * 20 19 18 22 22 C 1.37879 * 120.00189 * 180.02562 * 20 19 18 23 23 N 1.31511 * 119.99640 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00271 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.46847 * 89.99958 * 24 22 20 26 26 H 1.48501 * 109.46932 * 209.99721 * 24 22 20 27 27 H 1.48496 * 109.47058 * 329.99737 * 24 22 20 28 28 C 1.38172 * 120.05216 * 0.02562 * 7 6 5 29 29 H 1.08997 * 109.47149 * 60.00341 * 1 2 3 30 30 H 1.09007 * 109.46894 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47193 * 299.99688 * 1 2 3 32 32 H 1.07998 * 120.02741 * 359.96071 * 4 3 2 33 33 H 1.07998 * 119.97512 * 179.97438 * 5 4 3 34 34 H 1.07997 * 119.94801 * 180.02562 * 6 5 4 35 35 H 1.08998 * 117.49671 * 0.02562 * 10 8 7 36 36 H 1.09000 * 117.49258 * 145.02167 * 10 8 7 37 37 H 1.08998 * 109.47366 * 3.62882 * 13 11 10 38 38 H 1.09001 * 109.47074 * 123.62727 * 13 11 10 39 39 H 0.96996 * 120.00365 * 344.99688 * 14 13 11 40 40 H 1.08994 * 109.47268 * 299.99765 * 18 15 14 41 41 H 1.09000 * 109.47040 * 60.00454 * 18 15 14 42 42 H 1.08994 * 109.47170 * 299.99918 * 19 18 15 43 43 H 1.09000 * 109.46953 * 60.00494 * 19 18 15 44 44 H 0.97000 * 120.00333 * 180.02562 * 23 22 20 45 45 H 1.08002 * 120.02512 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9207 3.6048 0.0000 6 6 3.3018 3.6758 0.0016 7 6 4.0559 2.5172 0.0032 8 6 5.5607 2.5982 -0.0008 9 1 6.0789 1.7401 0.4273 10 6 6.1944 3.9768 0.1965 11 6 6.2266 3.3100 -1.1801 12 1 5.5764 3.7196 -1.9531 13 6 7.5693 2.7628 -1.6687 14 7 7.9869 3.4930 -2.8681 15 16 9.5507 3.3830 -3.4020 16 8 9.5905 4.2253 -4.5458 17 8 10.3345 3.6713 -2.2523 18 6 9.7431 1.6450 -3.8843 19 6 11.1643 1.4137 -4.4018 20 6 11.3244 -0.0303 -4.8019 21 1 10.4954 -0.7147 -4.6979 22 6 12.5293 -0.4780 -5.3008 23 7 13.5390 0.3552 -5.4270 24 14 12.7276 -2.2679 -5.7974 25 1 12.3591 -2.4286 -7.2269 26 1 14.1398 -2.6826 -5.6005 27 1 11.8415 -3.1151 -4.9595 28 6 3.4310 1.2849 0.0027 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2128 2.3203 -0.0016 33 1 1.3339 4.5114 -0.0008 34 1 3.7921 4.6381 0.0024 35 1 5.5229 4.8250 0.3296 36 1 7.1297 4.0256 0.7542 37 1 8.3189 2.8884 -0.8875 38 1 7.4655 1.7039 -1.9057 39 1 7.3475 4.0408 -3.3497 40 1 9.5624 1.0059 -3.0200 41 1 9.0271 1.4045 -4.6701 42 1 11.3446 2.0527 -5.2662 43 1 11.8807 1.6543 -3.6163 44 1 14.3866 0.0404 -5.7783 45 1 4.0206 0.3800 0.0035 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416619927.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:17 Heat of formation + Delta-G solvation = -96.512569 kcal Electronic energy + Delta-G solvation = -25906.340086 eV Core-core repulsion = 22015.705321 eV Total energy + Delta-G solvation = -3890.634765 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.19455 -39.62769 -38.13575 -37.67731 -36.96807 -35.87221 -35.28093 -33.09975 -32.02452 -30.81709 -28.17613 -27.57007 -27.19945 -24.44639 -23.58194 -23.47184 -22.03753 -21.21711 -20.21096 -19.07233 -18.70221 -18.18280 -17.52837 -17.16353 -17.02761 -16.87010 -16.63197 -16.51404 -16.26110 -15.66623 -15.17529 -15.03581 -14.90695 -14.47414 -14.35575 -14.32959 -13.71586 -13.69279 -13.33376 -13.21796 -13.15065 -13.05361 -12.92174 -12.76800 -12.68981 -12.50330 -12.23882 -12.21035 -12.11583 -12.07700 -11.74370 -11.68864 -11.38895 -11.30906 -11.03488 -10.63566 -10.22026 -9.61901 -9.12410 -8.24952 -6.38584 -0.63427 0.32426 0.50220 1.41356 1.43047 1.54161 1.89336 2.36939 2.38753 2.62247 2.85296 3.08419 3.10323 3.31239 3.57620 3.84092 3.90209 3.97115 4.02208 4.08285 4.18472 4.18835 4.26007 4.31603 4.38874 4.40160 4.49001 4.59275 4.72841 4.74683 4.80598 4.82361 4.91507 4.98846 5.08663 5.20008 5.29689 5.31059 5.32387 5.36219 5.51983 5.69299 5.69938 5.84747 6.08035 6.18390 6.47353 6.75215 7.31337 8.87167 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012511 B = 0.002193 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.463441 B =12767.060408 C =14513.467659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.341 6.341 3 C 0.112 3.888 4 C -0.219 4.219 5 C -0.080 4.080 6 C -0.165 4.165 7 C -0.016 4.016 8 C -0.112 4.112 9 H 0.123 0.877 10 C -0.163 4.163 11 C -0.141 4.141 12 H 0.121 0.879 13 C 0.134 3.866 14 N -1.105 6.105 15 S 2.626 3.374 16 O -1.000 7.000 17 O -0.997 6.997 18 C -0.590 4.590 19 C 0.019 3.981 20 C -0.538 4.538 21 H 0.075 0.925 22 C -0.005 4.005 23 N -0.934 5.934 24 Si 0.974 3.026 25 H -0.272 1.272 26 H -0.283 1.283 27 H -0.258 1.258 28 C -0.166 4.166 29 H 0.063 0.937 30 H 0.115 0.885 31 H 0.065 0.935 32 H 0.145 0.855 33 H 0.148 0.852 34 H 0.140 0.860 35 H 0.114 0.886 36 H 0.105 0.895 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.425 0.575 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.006 0.994 43 H 0.008 0.992 44 H 0.267 0.733 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.491 4.111 13.825 32.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.255 6.255 3 C 0.067 3.933 4 C -0.237 4.237 5 C -0.098 4.098 6 C -0.183 4.183 7 C -0.017 4.017 8 C -0.131 4.131 9 H 0.141 0.859 10 C -0.199 4.199 11 C -0.161 4.161 12 H 0.139 0.861 13 C 0.008 3.992 14 N -0.867 5.867 15 S 2.723 3.277 16 O -0.990 6.990 17 O -0.986 6.986 18 C -0.722 4.722 19 C -0.020 4.020 20 C -0.577 4.577 21 H 0.093 0.907 22 C -0.204 4.204 23 N -0.573 5.573 24 Si 0.797 3.203 25 H -0.197 1.197 26 H -0.209 1.209 27 H -0.182 1.182 28 C -0.185 4.185 29 H 0.082 0.918 30 H 0.133 0.867 31 H 0.084 0.916 32 H 0.163 0.837 33 H 0.166 0.834 34 H 0.158 0.842 35 H 0.132 0.868 36 H 0.124 0.876 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.262 0.738 40 H 0.160 0.840 41 H 0.160 0.840 42 H 0.024 0.976 43 H 0.026 0.974 44 H 0.076 0.924 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -28.499 4.562 13.867 32.020 hybrid contribution -0.138 -1.063 -0.692 1.276 sum -28.637 3.499 13.174 31.715 Atomic orbital electron populations 1.23315 0.76523 1.05415 1.02223 1.86049 1.23442 1.27216 1.88777 1.19201 0.92492 0.84839 0.96725 1.21497 1.01030 0.92144 1.09055 1.21243 0.94597 0.97762 0.96170 1.21239 0.94140 0.98599 1.04317 1.19006 0.93617 0.92313 0.96731 1.21173 0.90559 0.98312 1.03044 0.85870 1.23429 1.03139 0.95251 0.98090 1.22521 0.96809 1.04050 0.92690 0.86070 1.21123 0.95709 0.96064 0.86263 1.55244 1.30112 1.62835 1.38513 1.04257 0.73098 0.77471 0.72896 1.93503 1.86134 1.65892 1.53515 1.93497 1.69918 1.84147 1.51085 1.30353 1.06717 1.22815 1.12299 1.18827 0.88997 0.98584 0.95576 1.21526 0.98311 0.94943 1.42908 0.90681 1.26121 0.95568 1.03163 0.95523 1.70100 1.03498 1.37400 1.46335 0.85316 0.77558 0.78507 0.78892 1.19696 1.20872 1.18168 1.20381 0.91794 0.98626 1.07690 0.91789 0.86681 0.91600 0.83704 0.83387 0.84214 0.86807 0.87626 0.90271 0.89612 0.73842 0.83971 0.84033 0.97555 0.97368 0.92441 0.85393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.34 -6.11 10.50 -92.39 -0.97 -7.08 16 3 C 0.11 2.06 6.69 22.51 0.15 2.21 16 4 C -0.22 -3.11 9.04 22.37 0.20 -2.91 16 5 C -0.08 -1.03 10.04 22.25 0.22 -0.80 16 6 C -0.17 -2.35 9.30 22.28 0.21 -2.15 16 7 C -0.02 -0.27 5.61 -19.88 -0.11 -0.39 16 8 C -0.11 -1.68 5.76 -11.54 -0.07 -1.75 16 9 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 10 C -0.16 -2.24 9.50 30.60 0.29 -1.95 16 11 C -0.14 -2.19 5.53 -10.80 -0.06 -2.25 16 12 H 0.12 1.72 7.98 -2.39 -0.02 1.70 16 13 C 0.13 2.59 6.41 86.38 0.55 3.15 16 14 N -1.11 -25.42 5.89 -187.50 -1.10 -26.53 16 15 S 2.63 90.35 5.46 -56.49 -0.31 90.04 16 16 O -1.00 -41.09 18.08 -127.65 -2.31 -43.40 16 17 O -1.00 -40.55 17.50 -127.65 -2.23 -42.78 16 18 C -0.59 -21.75 6.01 71.98 0.43 -21.32 16 19 C 0.02 0.99 4.98 29.85 0.15 1.14 16 20 C -0.54 -29.80 9.11 25.60 0.23 -29.56 16 21 H 0.08 3.84 7.74 -2.91 -0.02 3.81 16 22 C -0.01 -0.31 5.46 84.66 0.46 0.15 16 23 N -0.93 -56.97 13.29 21.45 0.28 -56.68 16 24 Si 0.97 43.45 29.54 68.60 2.03 45.47 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 26 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 27 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 28 C -0.17 -3.15 9.68 22.37 0.22 -2.93 16 29 H 0.06 0.45 7.66 -2.39 -0.02 0.43 16 30 H 0.11 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.07 0.43 7.66 -2.39 -0.02 0.42 16 32 H 0.15 1.36 6.30 -2.91 -0.02 1.35 16 33 H 0.15 1.12 8.06 -2.91 -0.02 1.09 16 34 H 0.14 1.51 6.01 -2.91 -0.02 1.49 16 35 H 0.11 1.25 6.17 -2.39 -0.01 1.24 16 36 H 0.11 1.48 8.03 -2.39 -0.02 1.46 16 37 H 0.08 1.63 7.43 -2.39 -0.02 1.62 16 38 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.43 7.96 8.51 -96.75 -0.82 7.13 16 40 H 0.14 4.50 8.14 -2.39 -0.02 4.48 16 41 H 0.14 4.59 8.14 -2.39 -0.02 4.57 16 42 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 43 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 44 H 0.27 15.23 8.31 -92.71 -0.77 14.45 16 45 H 0.13 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -79.34 389.40 -0.44 -79.77 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 0.18 Total: 19.25 kcal Atomic # 6 Polarization: -62.06 SS G_CDS: 4.00 Total: -58.07 kcal Atomic # 7 Polarization: -82.39 SS G_CDS: -0.82 Total: -83.21 kcal Atomic # 8 Polarization: -87.75 SS G_CDS: -5.51 Total: -93.26 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: 90.35 SS G_CDS: -0.31 Total: 90.04 kcal Total: -79.34 -0.44 -79.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416619927.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.740 kcal (2) G-P(sol) polarization free energy of solvation -79.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds