Wall clock time and date at job start Sat Apr 11 2020 05:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 113.99859 * 2 1 4 4 C 1.53004 * 109.47025 * 179.97438 * 3 2 1 5 5 O 1.42898 * 109.46762 * 64.99879 * 4 3 2 6 6 C 1.42909 * 113.99893 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47280 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.47282 * 174.99945 * 7 6 5 9 9 C 1.52998 * 109.47156 * 55.00017 * 7 6 5 10 10 N 1.46493 * 109.47096 * 295.00066 * 7 6 5 11 11 C 1.34783 * 120.00266 * 204.99727 * 10 7 6 12 12 O 1.21554 * 119.99505 * 0.02562 * 11 10 7 13 13 C 1.47857 * 120.00551 * 180.02562 * 11 10 7 14 14 C 1.39674 * 120.09834 * 0.02598 * 13 11 10 15 15 C 1.38046 * 120.04015 * 179.97438 * 14 13 11 16 16 C 1.38176 * 120.23908 * 359.76355 * 15 14 13 17 17 C 1.39179 * 120.20513 * 0.51284 * 16 15 14 18 18 S 1.76194 * 120.02163 * 179.73865 * 17 16 15 19 19 C 1.76196 * 100.00182 * 265.25136 * 18 17 16 20 20 H 1.08000 * 120.00393 * 5.12593 * 19 18 17 21 21 C 1.38736 * 120.00006 * 185.12109 * 19 18 17 22 22 N 1.31631 * 119.99738 * 180.02562 * 21 19 18 23 23 Si 1.86791 * 120.00147 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.46962 * 89.99772 * 23 21 19 25 25 H 1.48502 * 109.47274 * 210.00042 * 23 21 19 26 26 H 1.48499 * 109.47299 * 330.00031 * 23 21 19 27 27 C 1.38875 * 119.95687 * 359.47003 * 17 16 15 28 28 H 1.08996 * 109.47500 * 300.00700 * 1 2 3 29 29 H 1.08997 * 109.46669 * 60.00496 * 1 2 3 30 30 H 1.09003 * 109.47109 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47681 * 59.99732 * 3 2 1 32 32 H 1.09001 * 109.47070 * 299.99162 * 3 2 1 33 33 H 1.08997 * 109.47282 * 304.99589 * 4 3 2 34 34 H 1.08998 * 109.47023 * 184.99446 * 4 3 2 35 35 H 1.09006 * 109.46931 * 60.00042 * 6 5 4 36 36 H 1.09001 * 109.46939 * 300.00004 * 6 5 4 37 37 H 1.08996 * 109.47315 * 300.00346 * 9 7 6 38 38 H 1.09005 * 109.47089 * 59.99800 * 9 7 6 39 39 H 1.08997 * 109.47405 * 179.97438 * 9 7 6 40 40 H 0.97000 * 120.00523 * 25.00430 * 10 7 6 41 41 H 1.08002 * 119.98410 * 359.97438 * 14 13 11 42 42 H 1.07996 * 119.87866 * 180.02562 * 15 14 13 43 43 H 1.08006 * 119.89861 * 180.27092 * 16 15 14 44 44 H 0.96995 * 120.00040 * 180.02562 * 22 21 19 45 45 H 1.08000 * 120.12505 * 180.25503 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 8 3.9658 0.5792 -1.2201 6 6 5.3823 0.4196 -1.3221 7 6 5.7267 -0.2352 -2.6613 8 1 6.8097 -0.2761 -2.7779 9 6 5.1217 0.5865 -3.8013 10 7 5.1802 -1.5940 -2.6953 11 6 5.7404 -2.5260 -3.4916 12 8 6.6994 -2.2391 -4.1812 13 6 5.1886 -3.8973 -3.5264 14 6 4.0863 -4.2290 -2.7353 15 6 3.5717 -5.5095 -2.7691 16 6 4.1402 -6.4665 -3.5878 17 6 5.2423 -6.1485 -4.3760 18 16 5.9676 -7.3745 -5.4130 19 6 7.2463 -7.9570 -4.3500 20 1 7.3160 -7.5890 -3.3370 21 6 8.1637 -8.8885 -4.8142 22 7 9.1187 -9.3240 -4.0198 23 14 8.0437 -9.5246 -6.5663 24 1 8.8459 -8.6556 -7.4644 25 1 8.5657 -10.9136 -6.6255 26 1 6.6242 -9.5103 -7.0020 27 6 5.7666 -4.8628 -4.3488 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6886 1.8464 0.8899 32 1 1.6887 1.8463 -0.8901 33 1 3.8508 0.5686 0.8427 34 1 3.9784 2.1765 0.0901 35 1 5.7363 -0.2122 -0.5074 36 1 5.8632 1.3958 -1.2602 37 1 4.0388 0.6275 -3.6847 38 1 5.5283 1.5975 -3.7760 39 1 5.3674 0.1203 -4.7554 40 1 4.4151 -1.8230 -2.1448 41 1 3.6363 -3.4833 -2.0967 42 1 2.7191 -5.7631 -2.1566 43 1 3.7304 -7.4655 -3.6132 44 1 9.7603 -9.9750 -4.3444 45 1 6.6192 -4.6120 -4.9624 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430626164.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:25 Heat of formation + Delta-G solvation = -108.416908 kcal Electronic energy + Delta-G solvation = -26265.918588 eV Core-core repulsion = 22374.767612 eV Total energy + Delta-G solvation = -3891.150976 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.08845 -38.92366 -38.05517 -37.50309 -35.25103 -32.46596 -32.05696 -30.70709 -30.53282 -29.71861 -26.88453 -26.42068 -25.64653 -23.89285 -23.00083 -22.40214 -21.20410 -20.29820 -18.38509 -17.47198 -17.30569 -17.20545 -16.26803 -16.02693 -15.81321 -15.58606 -15.31690 -15.11734 -14.88809 -14.70420 -14.33617 -14.06167 -13.61133 -13.37288 -13.33530 -13.02948 -12.89021 -12.65736 -12.36919 -12.22475 -12.04339 -11.88562 -11.61508 -11.43510 -11.31318 -11.15653 -11.12566 -11.07065 -10.57399 -10.12336 -10.02846 -9.90141 -9.72613 -9.17276 -9.09095 -9.04866 -8.57503 -8.09954 -7.09524 -6.29830 -4.04794 1.18096 1.66299 2.89502 3.08504 3.14115 3.27725 3.29956 3.35119 3.41379 3.54333 4.14258 4.29448 4.44416 4.61250 4.69147 4.79152 4.86091 4.91150 4.92359 4.94457 4.98558 5.03493 5.04111 5.08791 5.14975 5.21725 5.27428 5.28354 5.32346 5.39944 5.59532 5.72297 5.84031 5.86701 6.00221 6.17674 6.25634 6.47149 6.59646 6.64867 6.67841 6.80188 6.89118 7.18018 7.60359 7.94486 8.36332 8.48192 9.14165 10.79671 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017606 B = 0.002319 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.964230 B =12073.101357 C =12952.681350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.063 3.937 4 C 0.063 3.937 5 O -0.375 6.375 6 C 0.053 3.947 7 C 0.148 3.852 8 H 0.101 0.899 9 C -0.159 4.159 10 N -0.723 5.723 11 C 0.565 3.435 12 O -0.537 6.537 13 C -0.153 4.153 14 C -0.083 4.083 15 C -0.140 4.140 16 C -0.052 4.052 17 C -0.086 4.086 18 S -0.113 6.113 19 C -0.508 4.508 20 H 0.091 0.909 21 C 0.094 3.906 22 N -0.877 5.877 23 Si 0.858 3.142 24 H -0.265 1.265 25 H -0.273 1.273 26 H -0.239 1.239 27 C -0.017 4.017 28 H 0.039 0.961 29 H 0.041 0.959 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.405 0.595 41 H 0.121 0.879 42 H 0.125 0.875 43 H 0.132 0.868 44 H 0.271 0.729 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.089 22.996 9.375 29.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C -0.014 4.014 4 C -0.014 4.014 5 O -0.295 6.295 6 C -0.025 4.025 7 C 0.043 3.957 8 H 0.119 0.881 9 C -0.217 4.217 10 N -0.376 5.376 11 C 0.353 3.647 12 O -0.414 6.414 13 C -0.157 4.157 14 C -0.102 4.102 15 C -0.159 4.159 16 C -0.073 4.073 17 C -0.197 4.197 18 S 0.121 5.879 19 C -0.655 4.655 20 H 0.109 0.891 21 C -0.115 4.115 22 N -0.513 5.513 23 Si 0.683 3.317 24 H -0.190 1.190 25 H -0.198 1.198 26 H -0.163 1.163 27 C -0.038 4.038 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.106 0.894 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.241 0.759 41 H 0.139 0.861 42 H 0.143 0.857 43 H 0.150 0.850 44 H 0.082 0.918 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -15.482 22.493 7.666 28.362 hybrid contribution 0.087 0.305 1.214 1.255 sum -15.395 22.798 8.880 28.907 Atomic orbital electron populations 1.22758 0.80926 1.03071 0.99804 1.87966 1.19688 1.27107 1.95361 1.22552 0.92341 0.85684 1.00832 1.22519 0.93394 0.97585 0.87867 1.87956 1.21623 1.82099 1.37786 1.22855 0.82150 0.99959 0.97492 1.20979 0.99533 0.81554 0.93600 0.88143 1.22076 1.01968 0.99220 0.98466 1.45920 1.35337 1.10168 1.46210 1.18385 0.82564 0.84690 0.79065 1.90763 1.27135 1.81336 1.42215 1.19843 0.99519 0.93694 1.02689 1.21228 0.94895 0.96770 0.97343 1.21045 1.01083 0.93239 1.00581 1.21884 0.93884 0.99247 0.92285 1.22167 0.98454 0.97302 1.01785 1.83047 1.40338 1.40247 1.24306 1.22251 1.13448 1.29339 1.00414 0.89092 1.24750 0.93642 0.95020 0.98041 1.69930 1.14985 1.30195 1.36182 0.86727 0.81189 0.79163 0.84645 1.19037 1.19838 1.16335 1.21881 0.96945 0.90860 0.94157 0.94238 0.94000 0.89391 0.91924 0.92387 0.92297 0.91760 0.92343 0.91753 0.91522 0.92039 0.91964 0.75898 0.86132 0.85658 0.84977 0.91845 0.84229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.38 -3.39 10.67 -40.09 -0.43 -3.82 16 3 C 0.06 0.40 6.32 37.16 0.23 0.63 16 4 C 0.06 0.40 6.32 37.16 0.23 0.64 16 5 O -0.38 -3.29 9.16 -40.09 -0.37 -3.66 16 6 C 0.05 0.42 5.68 37.16 0.21 0.63 16 7 C 0.15 1.58 2.98 -67.94 -0.20 1.38 16 8 H 0.10 1.18 7.58 -51.93 -0.39 0.78 16 9 C -0.16 -1.64 9.29 37.16 0.35 -1.30 16 10 N -0.72 -9.13 5.01 -54.75 -0.27 -9.40 16 11 C 0.56 9.43 7.74 -12.32 -0.10 9.34 16 12 O -0.54 -10.75 16.01 5.32 0.09 -10.66 16 13 C -0.15 -2.66 5.87 -105.00 -0.62 -3.27 16 14 C -0.08 -1.21 9.54 -39.12 -0.37 -1.58 16 15 C -0.14 -2.06 10.02 -39.67 -0.40 -2.46 16 16 C -0.05 -0.94 9.79 -39.25 -0.38 -1.32 16 17 C -0.09 -1.85 5.45 -39.00 -0.21 -2.06 16 18 S -0.11 -2.80 19.38 -107.50 -2.08 -4.88 16 19 C -0.51 -14.78 10.01 30.92 0.31 -14.47 16 20 H 0.09 2.88 8.02 -52.49 -0.42 2.46 16 21 C 0.09 2.75 5.50 -17.45 -0.10 2.66 16 22 N -0.88 -26.63 13.97 55.49 0.78 -25.85 16 23 Si 0.86 21.31 27.74 -169.99 -4.71 16.60 16 24 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.24 -5.75 6.74 56.52 0.38 -5.37 16 27 C -0.02 -0.35 9.34 -38.92 -0.36 -0.71 16 28 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.70 7.56 -51.93 -0.39 0.31 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.40 4.51 6.41 -40.82 -0.26 4.25 16 41 H 0.12 1.34 6.40 -52.49 -0.34 1.01 16 42 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 43 H 0.13 2.24 8.06 -52.48 -0.42 1.81 16 44 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 45 H 0.14 3.09 7.65 -52.49 -0.40 2.69 16 LS Contribution 395.32 15.07 5.96 5.96 Total: -1.00 -34.57 395.32 -8.20 -42.77 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -6.86 Total: 3.55 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -0.29 Total: -10.60 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: 0.50 Total: -35.25 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.71 Total: -18.14 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.71 Total: 16.60 kcal Atomic # 16 Polarization: -2.80 SS G_CDS: -2.08 Total: -4.88 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.57 -8.20 -42.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430626164.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.644 kcal (2) G-P(sol) polarization free energy of solvation -34.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds