Wall clock time and date at job start Sat Apr 11 2020 05:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34225 * 117.00330 * 2 1 4 4 O 1.20830 * 120.00154 * 359.97438 * 3 2 1 5 5 C 1.50704 * 120.00118 * 180.02562 * 3 2 1 6 6 N 1.46504 * 109.47015 * 179.97438 * 5 3 2 7 7 C 1.37092 * 120.00081 * 273.91725 * 6 5 3 8 8 H 1.07997 * 120.00221 * 359.71623 * 7 6 5 9 9 C 1.38954 * 119.99609 * 179.72256 * 7 6 5 10 10 N 1.31404 * 120.00172 * 67.34649 * 9 7 6 11 11 Si 1.86807 * 119.99652 * 247.34046 * 9 7 6 12 12 H 1.48496 * 109.46984 * 60.00233 * 11 9 7 13 13 H 1.48501 * 109.47046 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47146 * 300.00190 * 11 9 7 15 15 C 1.34778 * 119.99825 * 93.91660 * 6 5 3 16 16 O 1.21291 * 120.00191 * 187.00662 * 15 6 5 17 17 C 1.50703 * 119.99727 * 7.28412 * 15 6 5 18 18 H 1.08993 * 109.47550 * 357.50459 * 17 15 6 19 19 C 1.53001 * 109.47352 * 117.51212 * 17 15 6 20 20 O 1.42904 * 109.47000 * 237.50993 * 17 15 6 21 21 C 1.42896 * 114.00323 * 150.00371 * 20 17 15 22 22 C 1.50698 * 109.47307 * 180.02562 * 21 20 17 23 23 C 1.38245 * 119.96973 * 269.72345 * 22 21 20 24 24 C 1.38202 * 120.02144 * 179.72786 * 23 22 21 25 25 C 1.38452 * 119.97387 * 0.56628 * 24 23 22 26 26 F 1.35103 * 120.02492 * 179.68769 * 25 24 23 27 27 C 1.38456 * 119.95252 * 359.70392 * 25 24 23 28 28 C 1.38197 * 119.97084 * 0.02562 * 27 25 24 29 29 H 1.08997 * 109.47025 * 59.99808 * 1 2 3 30 30 H 1.08996 * 109.47178 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46553 * 300.00017 * 1 2 3 32 32 H 1.09002 * 109.47162 * 60.00225 * 5 3 2 33 33 H 1.08997 * 109.46787 * 299.99919 * 5 3 2 34 34 H 0.97005 * 119.99758 * 184.88222 * 10 9 7 35 35 H 1.08995 * 109.47541 * 186.64590 * 19 17 15 36 36 H 1.09001 * 109.46646 * 306.64627 * 19 17 15 37 37 H 1.08997 * 109.47139 * 66.64118 * 19 17 15 38 38 H 1.09008 * 109.46798 * 299.99631 * 21 20 17 39 39 H 1.09000 * 109.47240 * 59.99566 * 21 20 17 40 40 H 1.08000 * 119.99284 * 359.97438 * 23 22 21 41 41 H 1.08000 * 120.01031 * 180.25226 * 24 23 22 42 42 H 1.07994 * 120.01601 * 179.97438 * 27 25 24 43 43 H 1.08006 * 119.98687 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 7 3.9818 2.6796 -0.0011 7 6 4.0980 3.3597 -1.1858 8 1 3.8877 2.8585 -2.1190 9 6 4.4864 4.6938 -1.1857 10 7 5.7040 5.0237 -0.8179 11 14 3.2776 6.0185 -1.7088 12 1 2.0934 5.9896 -0.8132 13 1 3.9324 7.3485 -1.6216 14 1 2.8462 5.7704 -3.1079 15 6 4.2498 3.3035 1.1632 16 8 4.4695 4.4963 1.1755 17 6 4.2826 2.5179 2.4488 18 1 4.0241 1.4786 2.2463 19 6 5.6869 2.5859 3.0524 20 8 3.3410 3.0721 3.3699 21 6 2.7858 2.1186 4.2779 22 6 1.8111 2.8085 5.1971 23 6 2.2500 3.3408 6.3951 24 6 1.3581 3.9787 7.2363 25 6 0.0225 4.0743 6.8842 26 9 -0.8515 4.6921 7.7087 27 6 -0.4169 3.5359 5.6867 28 6 0.4778 2.9034 4.8445 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5139 0.8900 32 1 3.9558 0.7808 -0.8909 33 1 3.9564 0.7804 0.8891 34 1 5.9536 5.9586 -0.7497 35 1 5.7435 1.9240 3.9165 36 1 6.4182 2.2736 2.3069 37 1 5.8994 3.6087 3.3636 38 1 2.2673 1.3413 3.7165 39 1 3.5855 1.6693 4.8668 40 1 3.2909 3.2616 6.6720 41 1 1.7019 4.3980 8.1703 42 1 -1.4585 3.6095 5.4112 43 1 0.1352 2.4829 3.9105 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449960842.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:33 Heat of formation + Delta-G solvation = -136.664315 kcal Electronic energy + Delta-G solvation = -30295.447396 eV Core-core repulsion = 25836.858345 eV Total energy + Delta-G solvation = -4458.589051 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -48.99739 -40.10588 -39.40900 -38.65880 -36.97006 -35.95556 -34.07945 -32.58202 -31.76145 -31.24915 -30.14390 -28.66587 -26.55183 -25.94822 -25.12060 -23.16947 -22.73409 -21.54196 -20.95907 -19.31265 -17.81867 -17.39031 -17.26743 -16.63774 -16.53332 -16.33493 -16.04155 -15.69230 -15.60651 -15.29076 -14.84812 -14.45286 -14.23319 -13.97109 -13.64949 -13.50212 -13.28847 -13.16221 -13.08575 -12.64220 -12.43168 -12.15391 -12.11920 -11.94593 -11.82257 -11.74230 -11.44226 -11.22096 -11.08818 -10.87449 -10.58680 -10.47828 -10.41869 -10.06414 -9.93816 -9.41322 -9.20157 -8.89784 -8.73104 -8.35519 -7.17132 -6.58141 -3.46281 0.96761 1.14163 2.72118 2.90033 3.31931 3.46876 3.58035 3.70695 3.92887 4.14405 4.16871 4.50809 4.58442 4.73096 4.79996 4.94951 5.00616 5.05655 5.14712 5.15190 5.24569 5.31124 5.32154 5.39426 5.44258 5.48123 5.63879 5.65723 5.74005 5.81105 5.88227 5.91175 5.99620 6.06810 6.12144 6.17504 6.43902 6.64661 6.73204 6.76777 7.41852 7.58532 7.88959 8.27468 8.79452 9.11556 9.54877 10.14423 10.49378 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010093 B = 0.003928 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2773.538577 B = 7126.895493 C = 7917.271897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.372 6.372 3 C 0.427 3.573 4 O -0.473 6.473 5 C 0.117 3.883 6 N -0.408 5.408 7 C -0.444 4.444 8 H 0.097 0.903 9 C 0.163 3.837 10 N -0.719 5.719 11 Si 0.835 3.165 12 H -0.272 1.272 13 H -0.292 1.292 14 H -0.281 1.281 15 C 0.430 3.570 16 O -0.523 6.523 17 C 0.075 3.925 18 H 0.059 0.941 19 C -0.157 4.157 20 O -0.353 6.353 21 C 0.098 3.902 22 C -0.092 4.092 23 C -0.069 4.069 24 C -0.158 4.158 25 C 0.098 3.902 26 F -0.143 7.143 27 C -0.156 4.156 28 C -0.066 4.066 29 H 0.059 0.941 30 H 0.094 0.906 31 H 0.057 0.943 32 H 0.114 0.886 33 H 0.105 0.895 34 H 0.272 0.728 35 H 0.051 0.949 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.054 0.946 39 H 0.058 0.942 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.092 -12.057 11.571 17.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.289 6.289 3 C 0.266 3.734 4 O -0.356 6.356 5 C -0.011 4.011 6 N -0.129 5.129 7 C -0.562 4.562 8 H 0.114 0.886 9 C -0.061 4.061 10 N -0.345 5.345 11 Si 0.658 3.342 12 H -0.198 1.198 13 H -0.218 1.218 14 H -0.206 1.206 15 C 0.220 3.780 16 O -0.403 6.403 17 C 0.014 3.986 18 H 0.077 0.923 19 C -0.215 4.215 20 O -0.272 6.272 21 C 0.021 3.979 22 C -0.092 4.092 23 C -0.087 4.087 24 C -0.177 4.177 25 C 0.079 3.921 26 F -0.121 7.121 27 C -0.175 4.175 28 C -0.085 4.085 29 H 0.078 0.922 30 H 0.113 0.887 31 H 0.076 0.924 32 H 0.132 0.868 33 H 0.122 0.878 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.152 0.848 41 H 0.153 0.847 42 H 0.153 0.847 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.053 -10.809 11.599 16.971 hybrid contribution -1.151 0.591 -0.047 1.295 sum -7.204 -10.218 11.552 17.022 Atomic orbital electron populations 1.23126 0.77647 1.02783 1.02281 1.86524 1.22557 1.34695 1.85136 1.25267 0.93442 0.81275 0.73447 1.90722 1.66410 1.36063 1.42412 1.21004 0.86670 0.88214 1.05250 1.43253 1.56476 1.06827 1.06343 1.18411 1.58117 0.95388 0.84242 0.88580 1.24376 0.92714 0.97553 0.91464 1.70584 1.16602 1.20117 1.27174 0.87515 0.86742 0.81407 0.78512 1.19813 1.21811 1.20639 1.19130 0.87510 0.88561 0.82847 1.90541 1.51376 1.14305 1.84068 1.22246 0.89886 0.96447 0.89976 0.92311 1.22045 0.95774 1.03273 1.00363 1.88187 1.59147 1.33483 1.46388 1.21339 0.94422 0.91115 0.91002 1.19712 0.94031 1.00452 0.94999 1.20938 0.99609 0.95107 0.93031 1.21104 0.91696 1.02951 1.01900 1.17746 0.87547 0.97044 0.89811 1.91488 1.68790 1.80573 1.71264 1.21123 1.01300 1.01221 0.93844 1.20979 0.92363 0.96601 0.98511 0.92228 0.88741 0.92444 0.86809 0.87774 0.91714 0.93044 0.91157 0.90916 0.92766 0.92369 0.84763 0.84675 0.84667 0.84871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.56 101.05 1.07 1.49 16 2 O -0.37 -5.52 10.56 -39.24 -0.41 -5.93 16 3 C 0.43 7.92 8.01 36.01 0.29 8.21 16 4 O -0.47 -10.89 16.12 -18.75 -0.30 -11.19 16 5 C 0.12 2.10 5.87 -5.19 -0.03 2.07 16 6 N -0.41 -9.94 2.14 -116.09 -0.25 -10.19 16 7 C -0.44 -12.17 9.43 -14.93 -0.14 -12.31 16 8 H 0.10 2.55 8.06 -52.49 -0.42 2.13 16 9 C 0.16 4.66 3.13 -17.47 -0.05 4.61 16 10 N -0.72 -20.70 12.21 55.50 0.68 -20.03 16 11 Si 0.84 22.44 29.62 -169.99 -5.04 17.41 16 12 H -0.27 -7.92 7.11 56.52 0.40 -7.52 16 13 H -0.29 -7.69 7.11 56.52 0.40 -7.29 16 14 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 15 C 0.43 10.83 6.57 -10.98 -0.07 10.76 16 16 O -0.52 -15.59 13.37 -1.83 -0.02 -15.62 16 17 C 0.08 1.45 2.84 -27.88 -0.08 1.37 16 18 H 0.06 0.93 4.87 -51.93 -0.25 0.68 16 19 C -0.16 -2.63 9.45 37.16 0.35 -2.28 16 20 O -0.35 -6.89 9.95 -42.61 -0.42 -7.32 16 21 C 0.10 1.37 5.87 36.00 0.21 1.59 16 22 C -0.09 -1.25 5.51 -104.62 -0.58 -1.82 16 23 C -0.07 -0.83 9.70 -39.59 -0.38 -1.21 16 24 C -0.16 -1.83 10.03 -39.52 -0.40 -2.23 16 25 C 0.10 1.23 7.30 -39.42 -0.29 0.94 16 26 F -0.14 -1.82 17.27 2.25 0.04 -1.78 16 27 C -0.16 -1.93 10.03 -39.52 -0.40 -2.32 16 28 C -0.07 -0.88 9.70 -39.60 -0.38 -1.26 16 29 H 0.06 0.74 8.13 -51.93 -0.42 0.31 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 32 H 0.11 1.80 8.07 -51.93 -0.42 1.38 16 33 H 0.10 1.49 5.47 -51.93 -0.28 1.21 16 34 H 0.27 7.51 8.32 -40.82 -0.34 7.17 16 35 H 0.05 0.66 8.03 -51.93 -0.42 0.25 16 36 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.05 0.69 8.03 -51.92 -0.42 0.28 16 39 H 0.06 0.67 7.98 -51.93 -0.41 0.25 16 40 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 41 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 42 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 43 H 0.13 1.67 8.06 -52.48 -0.42 1.25 16 LS Contribution 378.29 15.07 5.70 5.70 Total: -1.00 -36.53 378.29 -6.48 -43.02 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -5.57 Total: -1.66 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: -0.88 Total: 7.59 kcal Atomic # 7 Polarization: -30.64 SS G_CDS: 0.43 Total: -30.21 kcal Atomic # 8 Polarization: -38.89 SS G_CDS: -1.17 Total: -40.05 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.04 Total: 17.41 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.53 -6.48 -43.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449960842.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.648 kcal (2) G-P(sol) polarization free energy of solvation -36.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds